• 제목/요약/키워드: solution NMR spectroscopy

검색결과 196건 처리시간 0.024초

Solution NMR spectroscopy for investigation of liquid-liquid phase separation

  • Saio, Tomohide;Okumura, Masaki;Lee, Young-Ho
    • 한국자기공명학회논문지
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    • 제24권2호
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    • pp.47-52
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    • 2020
  • Liquid-liquid phase separation (LLPS) of biomolecules, a newly-found phase behavior of molecules in the liquid phase, has shown to its relationship to various biological function and misfolding diseases. Extensive studies have increasingly revealed a general mechanism of LLPS and characterized the liquid droplet; ho wever, intermolecular interactions of proteins and structural states of LLPS-inducing proteins inside of the droplet remain largely unknown. Solution NMR spectroscopy has emerged as a powerful approach as it provides invaluable information on protein intermolecular interactions and structures at the atomic and residue level. We herein comprehensively address useful techniques of solution NMR including the effect of paramagnetic relaxation enhancement for the study on the LLPS and droplet based on recent studies.

Structure of CT16 in the C-terminal of Amyloid Precursor Protein Studied by NMR Spectroscopy

  • Lee, Kyoung-Ik;Baek, Dong-Ha;Shin, Song-Yub;Kim, Yang-Mee
    • 한국자기공명학회논문지
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    • 제8권1호
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    • pp.19-27
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    • 2004
  • C-terminal fragments of APP (APP-CTs), that contain complete Abeta sequence, are found in neuritic plaques, neurofibrillary tangles and the cytosol of lymphoblastoid cells obtained from AD patients. CT16, Lys649-Asp664 (KKQYTSIHHGVVEVD) has been known as the most toxic part in the C-terminal fragment of amyloid precursor protein (APP). The solution structure of CT16 was investigated using NMR spectroscopy in various membrane-mimicking environments. According to Circular Dichroim (CD) spectra, CT16 has a random structure in aqueous solution, while conformational change was induced by addition of TFE and SDS micelle. Tertiary structure as determined by NMR spectroscopy shows that CT16 has a ${\beta}$-turn conformation in trifluoroethanol-containing aqueous solution.

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In-cell nuclear magnetic resonance spectroscopy for studying intermolecular interactions

  • Sugiki, Toshihiko;Lin, Yuxi;Lee, Young-Ho
    • 한국자기공명학회논문지
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    • 제23권1호
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    • pp.33-39
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    • 2019
  • Studies on the interactions of proteins with partner molecules at the atomic resolution are essential for understanding the biological function of proteins in cells and for developing drug molecules. Solution NMR spectroscopy has shown remarkably useful capability for investigating properties on the weak to strong intermolecular interactions in both diluted and crowded solution such as cell lysates. Of note, the state-of-the-art in-cell NMR method has made it possible to obtain atomistic information on natures of intermolecular interactions between target proteins with partner molecules in living cells. In this mini-review, we comprehensively describe the several technological advances and developments in the in-cell NMR spectroscopy.

Tertiary Structure of PreSl(21-47) of Hepatitis B Virus Studied by NMR Spectroscopy

  • Kyeunghee Yu;Cho, Eun-Wie;Shin, Song-Yub;Kim, Kol-Lyong;Kim, Yangmee
    • 한국자기공명학회논문지
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    • 제4권1호
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    • pp.41-49
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    • 2000
  • To design more efficient peptide antagonist against the HBV, preSl(21-47) which carries the HBV receptor binding site for hepatocytes was synthesized and the solution structure of preSl(21-47) was investigated using CD spectroscopy and NMR spectroscopy in membrane-mimicking environments. According to CD spectra, preSl(21-47) has a random structure in aqueous solution, while conformational change was induced by addition of TFE and SDS micelle. Tertiary structures as determined by NMR spectroscopy shows that preSl(21-47) has a very flexible structure even in SDS micelle.

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Periodicity in Chemical Shifts and Temperature Coefficients of $\alpha$-helix in TFE Solution

  • Suh, Jeong-Yong;Choi, Byong-Seok
    • 한국생물물리학회:학술대회논문집
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    • 한국생물물리학회 1997년도 학술발표회
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    • pp.42-42
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    • 1997
  • Local conformation of helical peptides in TFE solution are studied by NMR spectroscopy. One is a helix containing proline and the other is its alanine derivative in which alanine is substituted for the proline. Chemical shift and temperature coefficient In NMR spectroscopy can be used preliminarily to determine secondary structure in proteins and peptides.(omitted)

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Structure of CT26 in the C-terminal of Amyloid Precursor Protein Studied by NMR Spectroscopy

  • Kang, Dong-Il;Baek, Dong-Ha;Shin, Song-Yub;Kim, Yang-Mee
    • Bulletin of the Korean Chemical Society
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    • 제26권8호
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    • pp.1225-1228
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    • 2005
  • C-terminal fragments of APP (APP-CTs), that contain A$\beta$ sequence, are found in neurotic plaques, neurofibrillary tangles and the cytosol of lymphoblastoid cells obtained from AD patients. CT26, Thr639-Asp664 (TVIVITLVMLKKKQYTSIHH GVVEVD) includes not only the transmembrane domain but also the cytoplasmic domain of APP. This sequence is produced from cleavage of APP by caspase and $\gamma$-secretase. In this study, the solution structure of CT26 was investigated using NMR spectroscopy and circular dichroism (CD) spectropolarimeter in various membrane-mimicking environments. According to CD spectra and the tertiary structure of CT26 determined in TFE-containing aqueous solution, CT26 has an α-helical structure from $Val^{2}\;to\;Lys^{11}$ in TFE-containing aqueous solution. However, according to CD data, CT26 adopts a $\beta$-sheet structure in the SDS micelles and DPC micelles. This result implies that CT26 may have a conformational transition between $\alpha$-helix and $\beta$-sheet structure. This study may provide an insight into the conformational basis of the pathological activity of the C-terminal fragments of APP in the model membrane.

시클로덱스트린과 아스피린의 포접화합물의 구조와 가수분해에 관한 연구 (Structure and Hydrolysis Study of Inclusion Complex of Cyclodextrin and Aspirin)

  • 최희숙;김경순
    • 생명과학회지
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    • 제10권1호
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    • pp.86-93
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    • 2000
  • Specific molecular recognition of cyclodextrin and aspirin was determined. A stable 1:1 inclusion complex was established in solution. The distinct structure of inclusion complex was elucidated by FT-IR, FAB-MS, UV, 1H NMR, and 13C NMR spectroscopy. Based on the 1H NMR data, a time-averaged conformation of $\alpha$-cyclodextrin exhibited significant catalytic activity toward the hydrolysis of aspirin in alkaline solution.

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$\pi$-Participation in Bicyclo [3.2.1]oct-6-en-2-yl Cation. $^{19}F$ NMR Spectroscopy as a Probe

  • Chae Jong-Kun;Shin Jung-Hyu
    • Bulletin of the Korean Chemical Society
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    • 제15권1호
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    • pp.12-14
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    • 1994
  • p-Fluorophenyl bicyclo[3.2.l]oct-6-en-2-yl cation (3) prepared in $FSO_3H-SO_2-CIF$ solution at -90$^{\circ}$C and examined by fluorine-19 nmr spectroscopy. The nmr data give a clear evidence for the formation of a stabilized ${\pi}$-bridging cation species in superacids. The degree of ${\pi}$delocalization in this cation is found to be inferior to the onset of nonclassical stabilization in 2-norbornenyl cation.

Structural and Functional Study of Antimicrobial Peptide Using NMR Spectroscopy

  • Suh, Jeong-Yong;Lee, Young-Tae;Park, Byong-Seok
    • 한국생물물리학회:학술대회논문집
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    • 한국생물물리학회 1997년도 학술발표회
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    • pp.14-14
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    • 1997
  • Structure of potent derivatives of gaegurin, an antimicrobial peptide from Korean frog, is studied by CD and NMR spectroscopy. Gaegurin did not show any secondary structure in aqueous environment, but adopted ${\alpha}$-helix in aqueous TFE solution, SDS and liposome buffer. NMR study showed distinct difference in stability near proline residue in helix.(omitted)

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