• 한국패류학회지
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• 제27권4호
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• pp.387-393
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• 2011

The objective of this study was to develop a real-time PCR method for the rapid detection and quantification of the protozoan pathogen Perkinsus olseni using a TaqMan probe. For the standard, genomic DNA was extracted from $10^5$ in vitro-cultured P. olseni trophozoites, and then 10-fold serial dilutions to the level of a single cell were prepared. To test the reliability of the technique, triplicates of genomic DNA were extracted from $5{\times}10^4$ cells and 10-fold serial dilutions to the level of 5 cells were prepared. The standards and samples were analyzed in duplicate using an $Exicycler^{TM}$ 96 real-time quantitative thermal block. For quantification, the threshold cycle ($C_T$) values of samples were compared with those obtained from standard dilutions. There was a strong linear relationship between the $C_T$ value and the log concentration of cells in the standard ($r^2$ = 0.996). Detection of DNA at a concentration as low as the equivalent of a single cell showed that the assay was sensitive enough to detect a single cell of P. olseni. The estimated number of P. olseni cells was similar to the original cell concentrations, indicating the reliability of P. olseni quantification by real-time PCR. Accordingly, the designed primers and probe may be used for the rapid detection and quantification of P. olseni from clam tissue, environmental water, and sediment samples.

• Biotechnology and Bioprocess Engineering:BBE
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• 제6권2호
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• pp.117-127
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• 2001

The high-level expression of a human single chain urokinase-type plasminogen activator (scu-PA) was achieved by employing a methotrexate (MTX)-dependent gene amplification system in Chinese hamster ovary (CHO) cells. By cotransfecting and coamplifying a scu-PA expression plasmid and dihydrofolate reductase (DHFR) minigene, several scu-PA expressing CHO cell lines were selected and gene-amplified. These recombinant cell lines, NGpUKs, secreted a completely processed scu-PA of 54 kD and up to 60mg/L was accumulated in the culture medium when they were adapted to an optimal MTX concentration. Over 95% of the scu-PA expressed was secreted in the culture medium and identified having the proper function of a plasminogen activator when activated by plasmin. Based on a genomic Southern analysis, a representative subclone, MGpUK-5, exhibited MTX-dependent scu-PA gene amplification, plus the initial single-copy gene of scu-PA eventually turned into about 150 copies of the amplified gene of scu-PA after gradual adaptation to 2.0$\mu$M of MTX. Meanwhile, the transcripts kof the scu-PA gene increased, although -early saturation of transcription was identified at 0.1$\mu$M of MTX. The scu-PA production by the MGpUK-5 subclone also increased relative to the gene amplification and increased transcripts, however, the relationship was not linearly proportional. Accordingly, since the MGpUK cell lines expressed elevated levels of enzymatically active scu-PA, these cell lines could be applied to the largescale production of scu-PA.

• 대한전자공학회논문지SD
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• 제47권12호
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• pp.8-16
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• 2010

NAND Multi-level cell Flash memory는 한 셀에 여러 bit의 정보를 저장하는 방법으로, 용량 집적도를 더욱 높일수 있는 기술로 각광 받고 있다. 하지만 한 셀당 레벨 수를 올릴 경우, 셀간 간섭 등 여러 물리적 이유들로 인해 오류가 발생하며, 이 주된 오류 방향은 unidirectional 함이 알려져 있다. 기존에는 오류 정정 부호(ECC)등을 이용하여 이를 해결하려 했지만, 우리는 셀간 간섭으로 인한 오류에 포커스를 맞추어, 이 영향을 예측하고 줄여서 오류를 보정하는 새로운 알고리즘들을 제안한다. 이 알고리즘은 기존 오류정정부호 기법들과 별도의 단계로 동시에 적용할 수 있기에 에러 정정능력 향상에 효과적이다. 제안된 알고리즘들을 시뮬레이션을 통하여 성능을 비교하고 효율적인 알고리즘이 무엇인지 알아본다.

• 대한핵의학회지
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• 제5권2호
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• pp.19-40
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• 1971

Since the iron balance is maintained by regulated intestinal absorption rather than regulated excretion, there have been many reports concerning the factors which may influence the intestinal iron absorption. As the liver is the largest iron storage organ of the body, any hepatocellular damage may result in disturbances in iron metabolism, e,g., frequent co-existence of hemochromatosis and liver cirrhosis, or elevated serum iron level and increased iron absorption rate in patients with infectious hepatitis or cirrhosis. In one effort to demonstrate the influence of hepatocellular damage on intestinal iron absortion, the iron absorption rate was measured in the rabbits whose livers were injured by a single subcutaneous injection of carbon tetrachloride (doses ranging from 0.15 to 0.5cc per kg of body weight) or by a single irradiation of 2,000 to 16,000 rads with $^{60}Co$ on the liver locally. A single oral dose of $1{\mu}Ci\;of\;^{59}Fe$-citrate with 0.5mg of ferrous citrate was fed in the fasting state, 24 hours after hepatic damage had been induced, without any reducing or chelating agents, and stool was collected for one week thereafter. Serum iron levels, together with conventional liver function tests, were measured at 24, 48, 72, 120 and 168 hours after liver damage had been induced. All animals were sacrificed upon the completing of the one week's test period and tissue specimens were prepared for H-E and Gomori's iron stain. Following are the results. 1. Normal iron absorption rate of the rabbit was $41.72{\pm}3.61%$ when 0.5mg of iron was given in the fasting state, as measured by subtracting the amount recovered in stool collected for 7 days from the amount given. The test period of 7 days is adequate, for only 1% of the iron given was excreted thereafter. 2. The intestinal iron absorption rate and serum iron level were significantly increased when the animal was poisoned by a single subcutaneous injection of 0.15cc. per kg. of body weight of carbon tetrachloride or more, or the liver was irradiated with a single dose of 12,000 rads or more. The results of liver function tests which were done simultaneously remained within normal limit except SGOT and SGPT which were somewhat increased. 3. In each case, there has been good correlation between the extent of liver cell damage and degree of increased iron absorption rate or serum iron level. 4. The method of liver damage appeared to make no obvious difference in the pattern of iron deposit in liver. This may be partly due to the fact that tissue specimens were obtained too late, for by this time the elevated serum iron level had returned within normal range and the pathological changes were almost healed. 5. The possible factors and relationship between intestinal iron absorption and hepatic parenchymal cell damage has been discussed.

• 전자공학회논문지
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• 제52권9호
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• pp.54-62
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• 2015

낸드 플래시 기반의 SSD (Solid-State Drive)는 HDD (Hard Disk Drive) 대비 월등한 성능에도 불구하고 쓰기 회수 제한이라는 태생적 단점을 가지고 있다. 이로 인해 SSD의 수명은 워크로드에 의해 결정되어 SSD의 기술 변화 추세인 SLC (Single Level Cell) 에서 MLC (Multi Level Cell) 로의 전환, MLC에서 TLC (Triple Level Cell) 로의 전환에 있어 큰 도전이 될 수 있다. 기존 연구들은 주로 wear-leveling 또는 하드웨어 아키텍처 측면에서 SSD의 수명 개선을 다루었으나, 본 논문에서는 호스트가 요청한 쓰기에 대해 SSD가 낸드플래시 메모리를 통해 처리하는 수명관점의 효율성을 대변하는 WAF (Write Amplification Factor) 관점에서 Host I/O 스택 중 파일 시스템, I/O 스케줄러, 링크 전력에 대해 JEDEC 엔터프라이즈 워크로드를 이용해 I/O 스택 최적 구성에 대해 실험적 분석을 수행하였다. WAF는 SSD의 FTL의 효율성을 측정하는 지표로 수명관점에서 가장 객관적으로 사용한다. I/O 스택에 대한 수명 관점의 최적 구성은 MinPower-Dead-XFS로 최대 성능 조합인 MaxPower-Cfq-Ext4에 비해 성능은 13% 감소하였지만 수명은 2.6 배 연장됨을 확인하였다. 이는 I/O 스택의 최적화 구성에 있어, SSD 성능 관점뿐만 아니라 수명 관점의 고려에 대한 유의미를 입증한다.

• The Korean Journal of Physiology and Pharmacology
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• 제8권2호
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• pp.95-100
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• 2004

Ischemic preconditioning (IPC) has been accepted as a heart protection phenomenon against ischemia and reperfusion (I/R) injury. The activation of ATP-sensitive potassium $(K_{ATP})$ channels and the release of myocardial nitric oxide (NO) induced by IPC were demonstrated as the triggers or mediators of IPC. A common action mechanism of NO is a direct or indirect increase in tissue cGMP content. Furthermore, cGMP has also been shown to contribute cardiac protective effect to reduce heart I/R-induced infarction. The present investigation tested the hypothesis that $K_{ATP}$ channels attenuate DNA strand breaks and oxidative damage in an in vitro model of I/R utilizing rat ventricular myocytes. We estimated DNA strand breaks and oxidative damage by mean of single cell gel electrophoresis with endonuclease III cutting sites (comet assay). In the I/R model, the level of DNA damage increased massively. Preconditioning with a single 5-min anoxia, diazoxide $(100\;{\mu}M)$, SNAP $(300\;{\mu}M)$ and 8-(4-Chlorophenylthio)-guanosine-3',5'-cyclic monophosphate (8-pCPT-cGMP) $(100\;{\mu}M)$ followed by 15 min reoxygenation reduced DNA damage level against subsequent 30 min anoxia and 60 min reoxygenation. These protective effects were blocked by the concomitant presence of glibenclamide $(50\;{\mu}M)$, 5-hydroxydecanoate (5-HD) $(100\;{\mu}M)$ and 8-(4-Chlorophenylthio)-guanosine-3',5'-cyclic monophosphate, Rp-isomer (Rp-8-pCPT-cGMP) $(100\;{\mu}M)$. These results suggest that NO-cGMP-protein kinase G (PKG) pathway contributes to cardioprotective effect of $K_{ATP}$ channels in rat ventricular myocytes.

• 응용통계연구
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• 제33권4호
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• pp.511-526
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• 2020

단세포 RNA 시퀀싱 데이터(single-cell RNA-sequencing data, 이하 단세포 RNA 데이터)는 세포 조직으로부터 추출한 각 단세포 별 유전자의 신호를 기록한 데이터로, 세포 간의 이질성을 파악하는 것을 주요 목적으로 한다. 그러나 단세포 RNA 데이터는 샘플링 및 기술적인 한계로 인해 결측비율이 높고, 노이즈가 크다. 이러한 이유 때문에 기존의 군집화 방법을 적용하는 데에 한계가 존재한다. 본 논문에서는 단세포 RNA 데이터 분석에서 모티브를 얻어 스펙트럼 군집화(spectral clustering) 기반의 방법을 제안한다. 특히 유사도 행렬(similarity matrix) 계산에서 유전자 별로 가중치를 부여하여 기존의 단세포 데이터 분석 방법과 차별화하였다. 제안하는 군집화 방법은 유전자별 가중치를 부여함과 동시에 세포를 군집화한다. 군집화는 반복 알고리즘을 통해 제안하는 비볼록식(non-convex optimization)을 풀어 진행한다. 또한 실데이터 적용과 시뮬레이션을 통해 제안하는 군집화 방법이 기존의 방법보다 군집을 잘 구분하는 것을 보인다.

• 치과방사선
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• 제29권1호
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• pp.149-159
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• 1999

Purpose: The purpose of this study was to evaluate cervical lymph node metastasis of oral squamous cell carcinoma patients by MRI film and neural network system. Materials and Methods: The oral squamous cell carcinoma patients(21 patients. 59 lymph nodes) who have visited SNU hospital and been taken by MRI. were included in this study. Neck dissection operations were done and all of the cervical lymph nodes were confirmed with biopsy. In MR images. each lymph node were evaluated by using 6 MR imaging criteria(size. roundness. heterogeneity. rim enhancement. central necrosis, grouping) respectively. Positive predictive value. negative predictive value. and accuracy of each MR imaging criteria were calculated. At neural network system. the layers of neural network system consisted of 10 input layer units. 10 hidden layer units and 1 output layer unit. 6 MR imaging criteria previously described and 4 MR imaging criteria (site I-node level II and submandibular area. site II-other node level. shape I-oval. shape II-bean) were included for input layer units. The training files were made of 39 lymph nodes(24 metastatic lymph nodes. 10 non-metastatic lymph nodes) and the testing files were made of other 20 lymph nodes(10 metastatic lymph nodes. 10 non-metastatic lymph nodes). The neural network system was trained with training files and the output level (metastatic index) of testing files were acquired. Diagnosis was decided according to 4 different standard metastatic index-68. 78. 88. 98 respectively and positive predictive values. negative predictive values and accuracy of each standard metastatic index were calculated. Results: In the diagnosis of using single MR imaging criteria. the rim enhancement criteria had highest positive predictive value (0.95) and the size criteria had highest negative predictive value (0.77). In the diagnosis of using single MR imaging criteria. the highest accurate criteria was heterogeneity (accuracy: 0.81) and the lowest one was central necrosis (accuracy: 0.59). In the diagnosis of using neural network systems. the highest accurate standard metastatic index was 78. and that time. the accuracy was 0.90. Neural network system was more accurate than any other single MR imaging criteria in evaluating cervical lymph node metastasis. Conclusion: Neural network system has been shown to be more useful than any other single MR imaging criteria. In future. Neural network system will be powerful aiding tool in evaluating cervical node metastasis.

• 조명전기설비학회논문지
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• 제18권2호
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• pp.68-74
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• 2004

본 논문에서는 고조파를 저감시키고 출력파형 개선을 위한 방법으로 입력측 DC링크 전압의 조합을 이용한 새로운 하이브리드형 멀티레벨 인버터를 제안한다. 제안한 인버터는 단상 풀-브릿지 인버터 모듈로 구성된 3개의 H-bridge cell로 구성되어 있다. 2개의 풀-브릿지 모듈은 레벨생성을 위해 사용되고 나머지 하나의 모듈은 PWM 스위칭 동작에 사용되어진다. 레벨 생성을 위한 인버터에 의해 9레벨이 생성되고 PWM 동작을 위한 인버터에 의해 2레벨이 더해지게 되어 결과적으로 총 11레벨의 출력전압을 생성시킬 수 있다. 제안한 시스템의 기본적인 동작원리를 상세하게 설명하고 PSpice 시뮬레이션과 시작품을 이용한 실험을 통해 타당성을 증명할 수 있었다.

• Molecules and Cells
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• 제46권10호
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• pp.611-626
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• 2023

Acute myeloid leukemia (AML) is a heterogeneous disease caused by distinctive mutations in individual patients; therefore, each patient may display different cell-type compositions. Although most patients with AML achieve complete remission (CR) through intensive chemotherapy, the likelihood of relapse remains high. Several studies have attempted to characterize the genetic and cellular heterogeneity of AML; however, our understanding of the cellular heterogeneity of AML remains limited. In this study, we performed single-cell RNA sequencing (scRNAseq) of bone marrow-derived mononuclear cells obtained from same patients at different AML stages (diagnosis, CR, and relapse). We found that hematopoietic stem cells (HSCs) at diagnosis were abnormal compared to normal HSCs. By improving the detection of the DNMT3A R882 mutation with targeted scRNAseq, we identified that DNMT3A-mutant cells that mainly remained were granulocyte-monocyte progenitors (GMPs) or lymphoid-primed multipotential progenitors (LMPPs) from CR to relapse and that DNMT3A-mutant cells have gene signatures related to AML and leukemic cells. Copy number variation analysis at the single-cell level indicated that the cell type that possesses DNMT3A mutations is an important factor in AML relapse and that GMP and LMPP cells can affect relapse in patients with AML. This study advances our understanding of the role of DNMT3A in AML relapse and our approach can be applied to predict treatment outcomes.