• 제목/요약/키워드: single cell analysis

검색결과 850건 처리시간 0.032초

Identification of Loliolide with Anti-Aging Properties from Scenedesmus deserticola JD052

  • Dae-Hyun Cho;Jin-Ho Yun;Jina Heo;In-Kyoung Lee;Yong-Jae Lee;Seunghee Bae;Bong-Sik Yun;Hee-Sik Kim
    • Journal of Microbiology and Biotechnology
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    • 제33권9호
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    • pp.1250-1256
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    • 2023
  • Herein, different extracts of Scenedesmus deserticola JD052, a green microalga, were evaluated in vitro as a potential anti-aging bioagent. Although post-treatment of microalgal culture with either UV irradiation or high light illumination did not lead to a substantial difference in the effectiveness of microalgal extracts as a potential anti-UV agent, the results indicated the presence of a highly potent compound in ethyl acetate extract with more than 20% increase in the cellular viability of normal human dermal fibroblasts (nHDFs) compared with the negative control amended with DMSO. The subsequent fractionation of the ethyl acetate extract led to two bioactive fractions with high anti-UV property; one of the fractions was further separated down to a single compound. While electrospray ionization mass spectrometry (ESI-MS) and nuclear magnetic resonance (NMR) spectroscopy analysis identified this single compound as loliolide, its identification has been rarely reported in microalgae previously, prompting thorough systematic investigations into this novel compound for the nascent microalgal industry.

Identification of Cell Type-Specific Effects of DNMT3A Mutations on Relapse in Acute Myeloid Leukemia

  • Seo-Gyeong Bae;Hyeoung-Joon Kim;Mi Yeon Kim;Dennis Dong Hwan Kim;So-I Shin;Jae-Sook Ahn;Jihwan Park
    • Molecules and Cells
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    • 제46권10호
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    • pp.611-626
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    • 2023
  • Acute myeloid leukemia (AML) is a heterogeneous disease caused by distinctive mutations in individual patients; therefore, each patient may display different cell-type compositions. Although most patients with AML achieve complete remission (CR) through intensive chemotherapy, the likelihood of relapse remains high. Several studies have attempted to characterize the genetic and cellular heterogeneity of AML; however, our understanding of the cellular heterogeneity of AML remains limited. In this study, we performed single-cell RNA sequencing (scRNAseq) of bone marrow-derived mononuclear cells obtained from same patients at different AML stages (diagnosis, CR, and relapse). We found that hematopoietic stem cells (HSCs) at diagnosis were abnormal compared to normal HSCs. By improving the detection of the DNMT3A R882 mutation with targeted scRNAseq, we identified that DNMT3A-mutant cells that mainly remained were granulocyte-monocyte progenitors (GMPs) or lymphoid-primed multipotential progenitors (LMPPs) from CR to relapse and that DNMT3A-mutant cells have gene signatures related to AML and leukemic cells. Copy number variation analysis at the single-cell level indicated that the cell type that possesses DNMT3A mutations is an important factor in AML relapse and that GMP and LMPP cells can affect relapse in patients with AML. This study advances our understanding of the role of DNMT3A in AML relapse and our approach can be applied to predict treatment outcomes.

기준 전극을 이용한 용융탄산염 연료전지의 분극 특성 해석 (Analysis of Electrode Polarization in MCFC by a Reference Electrode)

  • 한종희;이갑수;정창열;윤성필;남석우;임태훈;홍성안
    • 전기화학회지
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    • 제4권3호
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    • pp.125-131
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    • 2001
  • 용융탄산염 연료전지의 장기 운전시 각 전극별 분극의 변화를 Au, $CO_2/O_2$ 기준전극이 부착된 단위전지를 이용하여 성공적으로 해석하였다. 서로 다른 구성요소로 조합된 네 가지 단위 전지를 운전하며 각 전극의 분극을 해석한 결과, 이미 알려진 바와 같이 공기극의 분극 크기가 연료극의 경우보다 큰 것을 실험적으로 측정할 수 있었다. 고온 부식 방지를 위해 cell frame의 wet seal부분에 Al코팅을 한 전지는 6,000시간까지 성능을 유지하여 부식이 전지 성능 저하에 큰 역할을 하고 있음을 알 수 있었다. 한편, $LiCoO_2$가 코팅된 안정화 공기극은 일반적으로 사용되는 NiO 공기극보다 lithiation에 필요한 시간이 길어 운전 초기에 공기극 분극이 크고 성능이 낮았으나 지속적인 운전으로 공기극이 충분히 lithiation되면서 공기극의 분극이 작아지고 성능도 점차 증가하였다. $Li_2CO_3/Na_2CO_3$ 전해질을 사용한 전지는 운전 중 성능이 하락과 상승을 반복하는 진동현상을 보였는데 이는 연료극보다는 공기극의 영향으로 해석되었다. 대부분의 단위전지들이 급격한 성능 하락을 보였을 경우의 공기극 분극은 급격히 증가하였으며 이로써 용융탄산염 연료전지의 수명 향상을 위해서는 공기극의 개선이 필수적이라는 것을 알 수 있었다.

Single Nucleotide Polymorphism in the Promoter Region of H1 Histone Family Member N, Testis-specific (H1FNT) and Its Association Study with Male Infertility

  • Yang, Seung-Hee;Lee, Jin-U;Lee, Su-Man
    • Genomics & Informatics
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    • 제8권4호
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    • pp.201-205
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    • 2010
  • The H1 histone family, member N, testis-specific (H1FNT) is exclusively expressed in the testis, and had its possible role for sperm chromatin formation. The purpose of this study is to investigate any genetic association of H1FNT gene with male infertility, especially at the promoter region. We examined the promoter single nucleotide polymorphisms (SNP) of H1FNT gene which is located within transcription factor binding site for its association with male infertility. The statistical analysis showed that the -1129A>T polymorphism was present at a statistically significance in male infertility (p=0.0059 and 0.0349 for hetero and risk type, respectively). The dual-luciferase promoter assay was performed to examine the polymorphic effect of this promoter SNP by the cloning of promoter region (1700bp fragment) into pGL3-basic vector. In our plasmid based reporter system, there is no big difference between wild and risk type. In conclusion, H1FNT -1129A>T promoter SNP is statistically significant with male infertility, especially with subfertile (non-azoospermia) group. Further analysis of its functional polymorphic effect in vivo may provide the biological significance of testis-specific histone with spermatogenesis.

CDMA 시스템에서 Time Delay를 이용한 기지국과 중계기 Traffic 분석 (Traffic analysis of the CDMA base station with repeaters using time delay devices)

  • 조웅호;진용옥
    • 한국통신학회논문지
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    • 제25권9A호
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    • pp.1348-1358
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    • 2000
  • 본 논문은 CDMA 이동전화 시스템에서 하나의 기지국(cell) 내에서 처리되는 BTS 와 중계기의 통화량을 분석하기 위한 연구이다. 일반적으로 중계기는 기지국(BTS)의 RF 회로에서 직접 분기하여 연결하는 방식으로 개발되어 기지국 통화와 구분되지 못하는 시스템 구조를 가지고 있다. 이러한 문제점을 해결하기 위해서 중계기 수신단에 시간 지연장치(Time Delay Device)를 설치하고 실험을 실시하여 Traffic을 구분하는 결과를 얻었다. 그러나 기지국에는 하나의 BTS에 다수의 중계기를 연결하여 운용하고 있다. 따라서 중계기 3대가 설치된 기지국(1BTS+3중계기)을 선정, 각 중계기에 계산된 임의의 Time Delay를 설치하고, 동 기지국에서 2일 동안 통화실험을 실시한 결과 기지국 및 3개의 중계기 Traffic이 뚜렷하게 구분되는 데이터를 얻었다.

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Comparison of Sexing Analysis between Karyotyping and Blasomere-PCR in Bovine embryos

  • Chang, Suk-Min;Lee, Jong-Ho;Park, Joong-Hoon;Park, Wha-Sik;Park, Chang-Sik;Jin, Dong-Il
    • 한국발생생물학회:학술대회논문집
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    • 한국발생생물학회 2003년도 제3회 국제심포지움 및 학술대회
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    • pp.92-92
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    • 2003
  • Accurate analysis of nuclear status is needed when biopsied-blastomeres are used for embryo sexing. In this study, the nuclear status of blastomeres derived from 8- to 16-cell stage IVF bovine embryos was analyzed to evaluate the representative of single blastomere for embryo sexing. When 55 embryos were analyzed by PCR following biopsy, the coincident rate of sex determination between biopsied-single blastomere and matched blastocyst by PCR was 80 %. Karyotyping of biastomeres in 8- 16-cell stage bovine embryos was conducted to assess chromosome status of IVF embryos. To establish karyotyping of blastomeres, concentrations of vinblastine sulfate and duration of exposure time for metaphase plate induction with 8- to 16-cell stage bovine embryos were tested. The most effective condition for induction of metaphase plate (>45%) was 1.0 ug/ml vinblastine sulfate treatment for 15 h. In 22 embryos under the condition, only 8 embryos out of ten that had a normal diploid chromosome complement showed a sex-chromosomal composition of XX or XY (36.4%) and 2 diploid embryos showed mosaicism of the opposite sex of XX and XY in blastomeres of embryo (9.1%). One haploid embryo contained only one X-chromosome (4.5%). Four out of the other 11 embryos having a mixoploid chromosomal complement contained haploid blastomere with wrong sex chromosome (18.2%). These results suggested that morphologically normal bovine embryos derived from IVF had considerable proportion of mixoploid and sex-chromosomal mosaicism which could be the cause of discrepancies of the sex between biopsied-single blastomere and matched blastocyst by PCR analysis.

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총 디젤분진의 DNA 손상작용과 야채 및 과일추출물의 보호효과 (Chemopreventive Effect of Vegetable or Fruit Extract Against Total Diesel Exhaust Particle Extract in NIH/3T3 Cells Using Alkaline Single Cell Gel Electrophoresis)

  • 허찬;김남이;허문영
    • Environmental Analysis Health and Toxicology
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    • 제21권2호
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    • pp.127-138
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    • 2006
  • In urban areas, diesel exhaust particles (DEP) are probably a major component of particulate matters, especially in Korea where drive many diesel vehicles. The aim of this study was to investigate genotoxic effects of DEP using single ceil gel electrophoresis. In order to evaluate the mechanisms of DEP genotoxicity, the rat microsome mediated and DNA repair enzyme treated comet assays together with conventional comet assay were performed. Total diesel particles (DEPT) was collected without site fractionation from diesel engine bus and dichloromethane extract was obtained. The organic extract of DEPT revealed DNA damage itself in NIH/3T3 cells. The level of DNA breaks plus oxidative DNA lesions and microsome mediated DNA damage was assessed by modified single cell gel eletrophoresis. DEPT was able to induce oxidative DNA damage as well as microsome mediated DNA damage. Vitamin C as an model antioxidant reduced DNA damage in endonuclase III treated comet assay. One of flavonoid, galangin as a CYP1A1 inhibitor. reduced DNA damage in the presence of S-9 mixture. $DEP_T$ is the sources of oxidative stress, but antioxidants can significantly reduce oxidative DNA dmage. And $DEP_T$ may contain indirect mutagens which can be inhibited by CYP1A1 inhibitors. The ethanol extracts of the mixed vegetables (BV) or the mixed fruits (BF) were evaluated for their in vitro antigenotoxic effects. BV and BF showed potent Inhibitory effects against DEPT induced DNA damage with oxidative DNA lesions and in the prescence of S-9 mixture. These results indicate that BV and BF could prevent cellular DNA damage by inhibiting oxidative stress and suppressing cytochrome P4501A1 in cell culture.

A Study on an Automatic Multi-Focus System for Cell Observation

  • Park, Jaeyoung;Lee, Sangjoon
    • Journal of Information Processing Systems
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    • 제15권1호
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    • pp.47-54
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    • 2019
  • This study is concerned with the mechanism and structure of an optical microscope and an automatic multi-focus algorithm for automatically selecting sharp images from multiple foci of a cell. To obtain precise cell images quickly, a z-axis actuator with a resolution of $0.1{\mu}m$ was designed to control an optical microscope Moreover, a lighting control system was constructed to select the color and brightness of light that best suit the object being viewed. Cell images are captured by the instrument and the sharpness of each image is determined using Gaussian and Laplacian filters. Next, cubic spline interpolation and peak detection algorithms are applied to automatically find the most vivid points among multiple images of a single object. A cancer cell imaging experiment using propidium iodide staining confirmed that a sharp multipoint image can be obtained using this microscope. The proposed system is expected to save time and effort required to extract suitable cell images and increase the convenience of cell analysis.

Analysis of activation, ohmic, and concentration losses in hydrogen fuelled PEM fuel cell

  • Rohan Kumar;K.A Subramanian
    • Advances in Energy Research
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    • 제8권4호
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    • pp.253-264
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    • 2022
  • This paper deals with the effects of design (active area, current density, membrane conductivity) and operating parameters (temperature, relative humidity) on the performance of hydrogen-fuelled proton exchange membrane (PEM) fuel cell. The design parameter of a PEM fuel cell with the active area of the single cell considered in this study is 25 cm2 (5 × 5). The operating voltage and current density of the fuel cell were 0.7 V and 0.5 A/cm2 respectively. The variations of activation voltage, ohmic voltage, and concentration voltage with respect to current density are analyzed in detail. The membrane conductivity with variable relative humidity is also analyzed. The results show that the maximum activation overpotential of the fuel cell was 0.4358 V at 0.21 A/cm2 due to slow reaction kinetics. The calculated ohmic and concentrated overpotential in the fuel cell was 0.01395 V at 0.76 A/cm2 and 0.027 V at 1.46 A/cm2 respectively.

Numerical Simulation of the Elastic Moduli of Cement Paste As a Three Dimensional Unit Cell

  • Park, Ki-Bong
    • Architectural research
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    • 제12권2호
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    • pp.93-98
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    • 2010
  • This paper describes a numerical method for estimating the elastic moduli of cement paste. The cement paste is modeled as a unit cell which consists of three components: the unhydrated cement grain, the gel, and the capillary pore. In the unit cell, the volume fractions of the constituents are quantified using a single kinetic function calculating the degree of hydration. The elastic moduli of cement paste are calculated from the total displacements of constituents when a uniform pressure is applied to the gel contact area. The cement paste is assumed to be a homogenous isotropic matrix. Numerical simulations were conducted through the finite element analysis of the three-dimensional periodic unit cell. The model predictions are compared with experimental results. The predicted trends are in good agreement with experimental observations. This approach and some of the results might also be relevant for other technical applications.