• Proceedings of the KIEE Conference
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• 2002.07d
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• pp.2534-2536
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• 2002

This paper presents the design of high speed bit and word processor for sequence logic control using a FPGA. This FPGA is able to execute sequence instruction during program fetch cycle, because the program memory was separated from the data memory for high speed execution at 40MHz clock. Also this processor has 274 instructions set with a 32bit fixed width, so instruction decoding time and data memory interface time was reduced. This FPGA was synthesized by V600EHQ240 and Foundation tool of Xilinx company. The final simulation was successfully performed under Foundation tool simulation environment. And the FPGA programmed by VHDL for a 240 pin HQFP package. Finally the benchmark was performed to prove that the designed for bit and word processor has better performance than Q4A of Mitsubishi for the sequence logic control.

• Genomics & Informatics
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• v.7 no.1
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• pp.46-48
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• 2009

Finishing is the most time-consuming step in sequencing, and many genome projects are left unfinished due to complex repeat regions. Here, we have developed BACContigEditor, a prototype shotgun sequence finishing tool. It is essentially an editor that visualizes assemblies of shotgun sequence fragment reads as gapped multiple alignments. The program offers some flexibility that is needed to rapidly resolve complex regions within a working session. The sole purpose of the release is to promote collaborative creation of extensible software for fragment assembly editors, foster collaborative development, and reduce barriers to initial tool development effort. We describe our software architecture and identify current challenges. The program is available under an Open Source license.

• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2003.09a
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• pp.264-267
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• 2003

Multiple sequence alignment is a useful tool to identify the relationships among protein sequences. Dynamic programming is the most widely used algorithm to obtain multiple sequence alignment with optimal cost. However dynamic programming cannot be applied to certain cost function due its drawback and to produce optimal multiple sequence alignment. We proposed sub-alignment refinement algorithm to overcome the problem of dynamic programming and impelmented this algorithm as a module of our MS Windows-based sequence alignment program.

• The Pure and Applied Mathematics
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• v.16 no.3
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• pp.255-258
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• 2009

It is well known that for a sequence a = ($a_0,\;a_1$,...) the general term of the dual sequence of a is $a_n\;=\;c_0\;^n_0\;+\;c_1\;^n_1\;+\;...\;+\;c_n\;^n_n$, where c = ($c_0,...c_n$ is the dual sequence of a. In this paper, we find the general term of the sequence ($c_0,\;c_1$,... ) and give another method for finding the inverse matrix of the Pascal matrix. And we find a simple proof of the fact that if the general term of a sequence a = ($a_0,\;a_1$,... ) is a polynomial of degree p in n, then ${\Delta}^{p+1}a\;=\;0$.

• Proceedings of the KIPE Conference
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• 2016.11a
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• pp.143-144
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• 2016

The circulating current control within the phase legs is one of the main control objectives in a modular multilevel converter (MMC) under different operating conditions. This paper proposes a control strategy of circulating currents in the MMC under unbalanced voltage by using a proportional-resonant (PR) controller. Under the unbalanced voltage, the circulating currents in the MMC consists of three components such as positive-sequence, negative-sequence, and zero-sequence circulating currents. With the PR controller, all components of the circulating current will be directly controlled in the stationary reference frame without decomposing into positive- and negative-sequence components. Thus, the ripples in the circulating currents and the DC current are suppressed under the unbalanced voltage. The effectiveness of the proposed method is verified by simulation results based on PSCAD/EMTDC simulation program.

• Journal of IKEEE
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• v.27 no.1
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• pp.93-102
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• 2023

As one of the techniques for analyzing malicious code, techniques creating a sequence or a graph of function call relationships in an executable program and then analyzing the result are proposed. Such methods generally study function calling in the executable program code through static analysis and organize function call relationships into a sequence or a graph. However, in the case of an obfuscated executable program, it is difficult to analyze the function call relationship only with static analysis because the structure/content of the executable program file is different from the standard structure/content. In this paper, we propose a dynamic analysis method to analyze the function call relationship of an obfuscated execution program. We suggest constructing a function call relationship as a graph using the proposed technique.

• Bioinformatics and Biosystems
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• v.1 no.1
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• pp.61-66
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• 2006

We propose a new fragment assembly program MLP (mate-based layout with PHRAP). MLP consists of PHRAP, repeat masking, and a new layout algorithm that uses the mate pair information. Our experimental results show that by using MLP instead of PHRAP, we can significantly reduce the difference between the assembled sequence and the original genome sequence.

• Journal of the Korean Institute of Illuminating and Electrical Installation Engineers
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• v.24 no.9
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• pp.150-158
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• 2010

We had experienced the several system failures which were concerned about zero sequence voltages at the tertiary side of 345[kV] transformers. In this paper, we had considered the zero sequence voltage and its reduction methods at the 345[kV] auto-transformer tertiary. For analysis, we used EMTP(Electro-Magnetic Transients Program). The calculation results by EMTP were compared with the measured data of the field tests. From the calculation and the field tests, we had verified that it is due to pre-saturation characteristics of the potential transformer. So, we had improved its saturation characteristics and applied it at real site. After improvements, we could reduce the zero sequence voltage below the setting level of the relay.

• Journal of Microbiology and Biotechnology
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• v.19 no.8
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• pp.743-748
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• 2009

Fungal diversity during composting was investigated by culture-independent rDNA sequence analysis. Composting was carried out with pig manure and mushroom cultural waste using a field-scale composter (Hazaka system), and samples were collected at various stages. Based on partial sequence analysis of large subunit (LSU) ribosomal RNA (rRNA) and sequence identity values, a total of 12 different fungal species were found at six sampling sites; Geotrichum sp., Debaryomyces hansenii, Monographella nivalis, Acremonium strictum, Acremonium alternatum, Cladosporium sphaerospermum, Myriangium durosai, Pleurotus eryngii, Malassezia globosa, Malassezia restricta, Rhodotorula glutinis, and Fusarium sporotrichioides. Geotrichum sp. of the class Saccharomycetes was the most predominant fungal species throughout the composting process (185 out of a total of 236 identified clones, or 78.4%), followed by Acremonium strictum (7.6%), Monographella nivalis (5.1%), and Pleurotus eryngii (3.8%). The prevalence of Geotrichum sp. was the lowest (61.1%) at the beginning of composting, and then gradually increased to 92.5% after 10 days of composting.

• Journal of Microbiology and Biotechnology
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• v.25 no.9
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• pp.1410-1416
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• 2015

Wolbachia is an obligate symbiotic bacteria that is ubiquitous in arthropods, with 25-70% of insect species estimated to be infected. Wolbachia species can interact with their insect hosts in a mutualistic or parasitic manner. Sequence types (ST) of Wolbachia are determined by multilocus sequence typing (MLST) of housekeeping genes. However, there are some limitations to MLST with respect to the generation of clone libraries and the Sanger sequencing method when a host is infected with multiple STs of Wolbachia. To assess the feasibility of massive parallel sequencing, also known as next-generation sequencing, we used pyrosequencing for sequence typing of Wolbachia in butterflies. We collected three species of butterflies (Eurema hecabe, Eurema laeta, and Tongeia fischeri) common to Korea and screened them for Wolbachia STs. We found that T. fischeri was infected with a single ST of Wolbachia, ST41. In contrast, E. hecabe and E. laeta were each infected with two STs of Wolbachia, ST41 and ST40. Our results clearly demonstrate that pyrosequencing-based MLST has a higher sensitivity than cloning and Sanger sequencing methods for the detection of minor alleles. Considering the high prevalence of infection with multiple Wolbachia STs, next-generation sequencing with improved analysis would assist with scaling up approaches to Wolbachia MLST.