• 제목/요약/키워드: sequence length

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고밀도 자기기록 채널을 위한 연속적인 천이의 제한을 갖는 코드 (Consecutive transition limited code for high-density magnetic recording channel)

  • 이주현;이재진
    • 한국통신학회논문지
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    • 제28권12C호
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    • pp.1177-1181
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    • 2003
  • 연속적인 천이의 제한을 갖는 변조 코드는 고밀도 자기기록 채널에서 사용하기 위한 채널 코드 중의 하나이다. 특히, 채널로 입력되는 코드열이 연속적인 천이를 2회 이하로 허용할 경우, 채널 출력에 대한 검출 성능이 월등히 향상될 수 있으나, 이와 반대로 코드율은 현저히 감소되는 단점이 있다. 따라서, 본 논문에서는 각 코드워드에서는 연속되는 천이 길이의 제한(j)을 2로 제한하면서, 코드워드가 연결되는 부분에서는 j=3까지 허용하는 코드율이 7/8인 런-길이 제한 (RLL) 코드를 제안하였다. 이때, 제안한 코드의 연속적인 ‘0’의 개수(k)는 7로 제한된다.

Systematic Development of Tomato BioResources in Japan

  • Ariizumi, Tohru;Aoki, Koh;Ezura, Hiroshi
    • Interdisciplinary Bio Central
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    • 제3권1호
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    • pp.1.1-1.6
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    • 2011
  • Recently, with the progress of genome sequencing, materials and information for research on tomato (Solanum lycopersicum) have been systematically organized. Tomato genomics tools including mutant collections, genome sequence information, full-length cDNA and metabolomic datasets have become available to the research community. In Japan, the National BioResource Project Tomato (NBRP Tomato) was launched in 2007, with aims to collect, propagate, maintain and distribute tomato bioresources to promote functional genomics studies in tomato. To this end, the dwarf variety Micro-Tom was chosen as a core genetic background, due to its many advantages as a model organism. In this project, a total of 12,000 mutagenized lines, consisting of 6000 EMS-mutagenized and 6000 gamma-ray irradiated M2 seeds, were produced, and the M3 offspring seeds derived from 2236 EMS-mutagenized M2 lines and 2700 gamma-ray irradiated M2 lines have been produced. Micro-Tom mutagenized lines in the M3 generation and monogenic Micro-Tom mutants are provided from NBRP tomato. Moreover, tomato cultivated varieties and its wild relatives, both of these are widely used for experimental study, are available. In addition to these bioresources, NBRP Tomato also provides 13,227 clones of full-length cDNA which represent individual transcripts non-redundantly. In this paper, we report the current status of NBRP Tomato and its future prospects.

Infectious in vivo Transcripts from a Full-length Clone of Soybean mosaic virus Strain G5H

  • Seo, Jang-Kyun;Lee, Hyeok-Geun;Choi, Hong-Soo;Lee, Su-Heon;Kim, Kook-Hyung
    • The Plant Pathology Journal
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    • 제25권1호
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    • pp.54-61
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    • 2009
  • An infectious full-length clone of Soybean mosaic virus (SMV) strain G5H was constructed under the control of the cauliflower mosaic virus 35S promoter. The cloned SMV G5H established infections upon simple rub-inoculation of soybean leaves with intact plasmid DNA. We demonstrated that this SMV G5H infectious DNA clone caused typical characteristic symptoms and virulence of SMV strain G5H in twelve tested soybean cultivars. Soybean cultivars Lee74, Somyungkong and Sowonkong developed systemic mosaic symptom while Kwanggyo, Taekwangkong, Hwangkeumkong and Geumjeongkong-l showed systemic necrosis. In contrast, Geumjeongkong-2, Jinpumkong-2, L29, V94-5152 and Ogden showed resistant response against SMV-G5H infection. We also determined full-length sequence of cloned SMV-G5H. The phyogenetic analyses reveal that SMV-G5H is most closely related to SMV-G5, and support that SMV-G5H might be derived from SMV-G5 by recombination rather than mutation.

Intrageneric Relationships of Trichoderma Based on Internal Transcribed Spacers and 5.8S rDNA Nucleotide Sequences

  • Kim, Gi-Young;Lee, Goang-Jae;Ha, Myung-Gyu;Lee, Tae-Ho;Lee, Jae-Dong
    • Mycobiology
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    • 제28권1호
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    • pp.11-16
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    • 2000
  • The nucleotide sequences of the internal transcribed spacer (ITS) regions of the ribosomal DNA including the 5.8S ribosomal RNA gene (rDNA) have been determined for 11 species in order to analyze their intrageneric relationships. The total length of these sequences ranged from 530 nucleotides for Trichoderma reesei KCTC 1286 to 553 nucleotide for Trichoderma koningii IAM 12534. Generally speaking, the length of ITS1 region was about 30 nucleotides longer than that of the ITS2 region. Also, the sequences of 5.8S rDNA were more conserved in length and variation than those of ITS regions. Although the variable ITS sequences were often ambiguously aligned, the conserved sites were also found. Thus, a neighbor-joining tree was constructed using the full sequence data of the ITS regions and the 5.8S rDNA. The Trichoderma genus used to be grouped on the basis of the morphological features and especially the shape of phialides needs to be reexamined. The phylogenetic tree displayed the presence of monophylogeny in the species of Trichoderma. Therefore, it was difficult to distinguish the intrageneric relationships in the Trichoderma genus.

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BTR공법의 시공단계별 안전성 해석 (A Safety Analysis of the BTR Method by Construction Sequence)

  • 정광모;이원희;이상헌;방명석
    • 대한안전경영과학회지
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    • 제14권1호
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    • pp.101-108
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    • 2012
  • In this study was conducted numerical analysis to evaluate the stability of BTR(Built-in Timber Roof Tunneling Method), which is one of construction methods of underground structures in the non-opening state. The discretion method was applied to individually model reinforcing members of BTR, and the homogeneity analysis technic by area ratio was used to verify the feasibility comparing this result with that from conventional analysis method. The parameter study was performed to evaluate the effect varying ground depth, distance length of reinforcing supports and to verify the field applicability of new analysis method. The results showed the very precise value with allowable error, so this method can be applied in the field, The more length of supporting members caused the more vertical displacement and the top displacement increment of support members is larger than that of ground surace. The effect of ground depth was more impressive than that of distance length of reinforcing supports.

Full-length Fas-associated Death Domain Protein Interacts with Short Form of Cellular FLICE Inhibitory Protein

  • Jeong, Mi-Suk;Jang, Se-Bok
    • Bulletin of the Korean Chemical Society
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    • 제27권1호
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    • pp.87-92
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    • 2006
  • Fas-associated death domain protein (FADD) recruits and activates procaspase-8 through interactions between the death effector domains of these two proteins. Cellular FLICE-inhibitory protein (c-FLIP) was identified as a molecule with sequence homology to caspase-8. It has been postulated that c-FLIP prevents formation of the competent death-inducing signaling complex in a ligand-dependent manner, through its interaction with FADD and/or caspase-8. However, the interaction of FADD and $c-FLIP_s$ (short form) in apoptosis signaling has been controversially discussed. We show the purification and the characterization of human full-length FADD and $c-FLIP_s$ expressed in Escherichia coli. The purified FADD and $c-FLIP_s$ are shown as homogeneity, respectively, in SDS-PAGE analysis and light-scattering measurements. The folding properties of the $\alpha$-helical structure of FADD and the super-secondary structure of $c-FLIP_s$ proteins were characterized by circular dichroism spectroscopy. Furthermore, we report here a series of biochemical and biophysical data for FADD-$c-FLIP_s$ binding in vitro. The binding of both FADD and $c-FLIP_s$ proteins was detected by BIAcore biosensor, fluorescence measurement, and size-exclusion column (SEC).

두 개의 최대 주기를 갖는 셀룰라 오토마타 수열을 이용한 영상 암호화 (Image Encryption using Cellular Automata Sequence with Two Maximum Cycle)

  • 남태희;조성진;김석태
    • 한국정보통신학회논문지
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    • 제14권5호
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    • pp.1201-1208
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    • 2010
  • 본 논문에서는 두 개의 선형 MLCA(Maximum Length Cellular Automata)을 이용한 영상 암호화 방법을 제안한다. 암호화 방법은 먼저 8 비트 초기 값을 임의로 설정한다. 그 다음, 설정된 초기 값을 이용하여 행과 열을 단계적으로 변화시켜 고품질의 PN(pseudo noise) 수열을 생성한다. 생성된 수열을 이용하여 기저영상을 생성한다. 마지막으로 기저영상을 원 영상과 XOR 연산함으로서 암호화 수준이 높은 결과 영상을 얻는다. 히스토그램 및 안정성 분석을 통하여 제안한 방법이 높은 암호화 수준의 성질을 가졌음을 검증한다.

First Report of Five Tobrilus Species (Nematoda: Triplonchida) from Korea

  • Kim, Jiyeon;Kim, Taeho;Yu, Jeong-Nam;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • 제36권3호
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    • pp.240-250
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    • 2020
  • Member of the genus Tobrilus Andrássy, 1959, which belongs to Tobrilidae Filipjev, 1918, are known as free-living nematodes in freshwater habitat. This genus was previously unknown from Korea. Five Tobrilus species are here reported for the first time from Korea: Tobrilus aberrans (Schneider, 1925), Tobrilus diversipapillatus (Daday, 1905), Tobrilus gracilis (Bastian, 1865), Tobrilus longus (Leidy, 1851), and Tobrilus wesenbergi (Micoletzky, 1925). Specimens were collected from sediments of the Nakdong River in Korea. Morphological characters and measurements of the specimens generally agree with the original descriptions of Tobrilus species, except for some differences that can be attributed to intraspecific variation among populations(e.g., nerve ring position [% pharynx] and reproductive length). Each species can be distinguished from other members of the genus by specific characters (e.g., cephalic setae length and position, buccal cavity and pocket shape, vulva position, degree of development of reproductive system, and tail length and shape). Here, five species in the genus Tobrilus are fully redescribed and illustrated using optical microscopy images. DNA barcode sequence information (the D2-D3 region of 28S rDNA) is also provided for molecular species identification.

국내에서 분리된 사람 로타바이러스의 NSP4 유전자 염기서열 분석 및 발현 (Nucleotide sequence analysis and expression of NSP4 gene of human rotaviruses isolated in Korea)

  • 정동혁;송윤경;김경미;박효선;백명순;강신영
    • 대한수의학회지
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    • 제42권1호
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    • pp.89-100
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    • 2002
  • The nonstructural glycoprotein NSP4, encoded by the 10th gene of rotavirus, has been known to play important roles in viral assembly and pathogenesis. The NSP4 genes of human rotavirus Korean isolates, designated as CBNU/HR-1, CBNU/HR-2, CBNU/HR-3, and CBNU/HR-4, were cloned, sequenced and characterized. Also, the NSP4 gene of the CBNU/HR-1 was expressed in a baculovirus-insect cell system. The sequence data indicated that the NSP4 genes of human rotavirus Korean isolates were 750 or 751 bases in length and encoded one open reading frame of 175 amino acids. Two glycosylation sites were recognized in the NSP4 gene of human rotavirus isolates tested. The NSP4 of CBNU/HR-1, CBNU/HR-3, and CBNU/HR-4 exhibited a high degree of amino acid sequence homology with that of NSP4 genotype B viruses, but a low degree of amino acid sequence homology with that of NSP4 genotype A viruses. However, the NSP4 of CBNU/HR-2 exhibited a high degree of amino acid sequence homology with that of NSP4 genotype A viruses, but a low degree of amino acid sequence homology with that of NSP4 genotype B viruses. The Sf9 cells infected with recombinant baculovirus, inserted with NSP4 gene of CBNU/HR-1, produced specific cytopathic effects and the expressed NSP4 was detected by immunofluorescence staining using NSP4-specific monoclonal antibody(MAb). The expressed NSP4 migrated at 16-26 kDa on SDS-PAGE and reacted with NSP4-specific MAb by Western blotting.

닭 텔로미어 길이의 유전력 추정과 유전 전이 양상 (Inheritance and Heritability of Telomere Length in Chicken)

  • 박단비;손시환
    • 한국가금학회지
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    • 제41권3호
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    • pp.217-225
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    • 2014
  • 텔로미어는 진핵 세포의 염색체 말단으로, 직렬 반복 DNA 염기 서열과 shelterin 단백질 복합체로 구성되어 있다. 텔로미어의 기능은 염색체를 보호하는 것으로 체세포의 텔로미어 길이는 세포 분열시 DNA 복제 결실로 인해 연령이 증가함에 따라 감소하는 경향이 있다. 그러나 유전적, 후생유전학적 및 환경적 수준에서 여러 가지 요인이 텔로미어 길이에 영향을 미친다. 따라서 본 연구에서는 닭의 텔로미어 길이의 유전력을 추정하고, 이들의 유전전이 양상을 살펴보고자 하였다. 텔로미어 길이는 백혈구를 이용하여 양적 형광접합보인법(Q-FISH)과 양적 중합효소 연쇄반응법(qRT-PCR)으로 분석하였다. 분석 결과, 텔로미어 길이의 유전력은 자손과 부모 회귀 분석에 의해 출생 시 0.9로 추정되었고, 10 주령 및 30주령 때 부 분산 분석에 의해 0.03과 0.04로 추정되었다. 부와 자손 간(r=0.348) 및 모와 자손 간(r=0.380) 텔로미어 길이는 모두 유의한 정의 상관 관계를 보였다. 따라서 닭 텔로미어의 유전 전이 양상은 부모 양쪽 모두로부터 비슷하게 자식에 영향을 미치는 것으로 판단된다. 더불어 암수 자손에 미치는 영향 또한 유사한 것으로 나타났다. 이러한 결과는 부모의 텔로미어 길이의 각인이 성염색체의 유전자가 아닌 상염색체의 유전자에 의해 조절되는 것을 의미한다. 또한, 산모 연령에 따른 출생 자손의 텔로미어 길이는 차이가 없는 것으로 나타났다. 따라서 모체의 연령이 출생 자손의 텔로미어 길이에 영향을 미치지 않는데, 이는 수정란의 초기 배아 단계에서 세포적 reprogramming이 이루어지기 때문으로 사료된다.