• Title/Summary/Keyword: sequence analysis

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A Review of the Opinion Target Extraction using Sequence Labeling Algorithms based on Features Combinations

  • Aziz, Noor Azeera Abdul;MohdAizainiMaarof, MohdAizainiMaarof;Zainal, Anazida;HazimAlkawaz, Mohammed
    • Journal of Internet Computing and Services
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    • v.17 no.5
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    • pp.111-119
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    • 2016
  • In recent years, the opinion analysis is one of the key research fronts of any domain. Opinion target extraction is an essential process of opinion analysis. Target is usually referred to noun or noun phrase in an entity which is deliberated by the opinion holder. Extraction of opinion target facilitates the opinion analysis more precisely and in addition helps to identify the opinion polarity i.e. users can perceive opinion in detail of a target including all its features. One of the most commonly employed algorithms is a sequence labeling algorithm also called Conditional Random Fields. In present article, recent opinion target extraction approaches are reviewed based on sequence labeling algorithm and it features combinations by analyzing and comparing these approaches. The good selection of features combinations will in some way give a good or better accuracy result. Features combinations are an essential process that can be used to identify and remove unneeded, irrelevant and redundant attributes from data that do not contribute to the accuracy of a predictive model or may in fact decrease the accuracy of the model. Hence, in general this review eventually leads to the contribution for the opinion analysis approach and assist researcher for the opinion target extraction in particular.

The Stacking Sequence Optimization of Stiffened Laminated Curved Panels with Different Loading and Stiffener Spacing

  • Kim Cheol;Yoon In-Se
    • Journal of Mechanical Science and Technology
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    • v.20 no.10
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    • pp.1541-1547
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    • 2006
  • An efficient procedure to obtain the optimal stacking sequence and the minimum weight of stiffened laminated composite curved panels under several loading conditions and stiffener layouts has been developed based on the finite element method and the genetic algorithm that is powerful for the problem with integer variables. Often, designing composite laminates ends up with a stacking sequence optimization that may be formulated as an integer programming problem. This procedure is applied for a problem to find the stacking sequence having a maximum critical buckling load factor and the minimum weight. The object function in this case is the weight of a stiffened laminated composite shell. Three different types of stiffener layouts with different loading conditions are investigated to see how these parameters influence on the stacking sequence optimization of the panel and the stiffeners. It is noticed from the results that the optimal stacking sequence and lay-up angles vary depending on the types. of loading and stiffener spacing.

Development of DSI(Delivery Sequence Information) Database Prototype (순로정보 데이터베이스 프로토타입 개발)

  • Kim, Yong-Sik;Lee, Hong-Chul;Kang, Jung-Yun;Nam, Yoon-Seok
    • IE interfaces
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    • v.14 no.3
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    • pp.247-254
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    • 2001
  • As current postal automation is limited to dispatch and arrival sorting, delivery sequence sorting is performed manually by each postman. It not only acts as a bottleneck process in the overall mailing process but is expensive operation. To cope with this problem effectively, delivery sequence sorting automation is required. The important components of delivery sequence sorting automation system are sequence sorter and Hangul OCR which function is to extract the address of delivery point. DSI database will be interfaced to both Hangul OCR and sequence sorter for finding the accurate delivery sequence number and stacker number. The objectives of this research are to develop DSI(Delivery Sequence Information) database prototype and client application for managing information effectively. For database requirements collection and analysis, we draw all possible sorting plans, and apply the AHP(Analytic Hierarchy Process) method to determine the optimal one. And then, we design DSI database schema based on the optimal one and implement it using Oracle RDBMS. In addition, as address information in DIS database consist of hierarchical structure which has its correspondence sequence number, so it is important to reorganize sequence information accurately when address information is inserted, deleted or updated. To increase delivery accuracy, we reflect this point in writing application.

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Current Limit Strategy of Voltage Controller of Delta-Connected H-Bridge STATCOM under Unbalanced Voltage Drop

  • Son, Gum Tae;Park, Jung-Wook
    • Journal of Electrical Engineering and Technology
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    • v.13 no.2
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    • pp.550-558
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    • 2018
  • This paper presents the current limit strategy of voltage controller of delta-connected H-bridge static synchronous compensator (STATCOM) under an unbalanced voltage fault event. When phase to ground fault happens, the feasibility to heighten the magnitude of sagging phase voltage is considered by using symmetric transformation method in delta-structure STATCOM. And the efficiency to cover the maximum physical current limit of switching device is considered by using vector analysis method that calculate the zero sequence current for balancing the cluster energy in delta connected H-bridge STATCOM. The result is simple and obvious. Only positive sequence current has to be used to support the unbalanced voltage sag. Although the relationship between combination of the negative sequence voltage with current and zero sequence current is nonlinear, the more negative sequence current is supplying, the larger zero sequence current is required. From the full-model STATCOM system simulation, zero sequence current demand is identified according to a ratio of positive and negative sequence compensating current. When only positive sequence current support voltage sag, the least zero sequence current is needed.

Cloning of the 5'-end and Amplification of Full-Length cDNA of Genomic RNA of Lily symptomless virus

  • Park, Seon-Ah;Ryu, Ki-Hyun
    • The Plant Pathology Journal
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    • v.18 no.4
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    • pp.187-191
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    • 2002
  • This paper describes the cloning and sequence analysis of the 5'-terminal region and full-length cDNA production of genomic RNA of Lily symptomless virus (LSV), a Species Of the genus Carlavirus. A sing1e DNA band about 600 bp harboring the 5'-end of genomic RNA of the virus was successfully amplified by reverse transcription-polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE), and was cloned for nucleotide sequence determination. Sequence analysis of selected RACE cDNA clones revealed that the LSV 5'non-translated region consists of 67 nucleotides long of AT rich stretch followed GC rich from the 5'-end. To produce full-length cDNA products for the viral genomic RNA, a set of LSV-specific primers could be designed based on the obtained sequence in this study and the known sequences of 3'-terminal region for the virus. Full-length cDNA copies of LSV, an 8.4 kb long, were directly amplified by the long-template RT-PCR technique from the purified viral genomic RNA samples. This full-length cDNA copies were analyzed by restriction mapping. The molecules produced in this study can be useful for the production of in vitro infectious cDNA clone, as well as, for the completion of genomic RNA sequence and genome structure for the virus.

An Integrated Process Planning System and Finite Element Simulation for Multistage Cold Forging (유한요소해석을 통합한 다단 냉간단조 공정설계시스템)

  • 최재찬;김병민;이언호
    • Transactions of Materials Processing
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    • v.4 no.1
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    • pp.28-38
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    • 1995
  • An integrated process planning system can determine desirable operation sequences even if they have little experience in the design of multistage cold forging process. This system is composed of seven major modules such as input module, pre-design module, formability check module, forming sequence design module, forming analysis module, FEM verification module, and output module which are used independently or in all. The forming sequence for the part can be determined by means of primitive geometries such as cylinder, cone, convex, and concave. By utilizing this geometrical characteristics(diameter, height, and radius), the part geometry is expressed by a list of the primitive geometries. Accordingly, the forming sequence design is formulated as the search problem which starts with a billet geometry and finishes with a given product one. Using the developed system, the sequence drawing with all dimensions, which includes the dimensional tolerances and the proper sequence of operations for parts, is generated under the environment of AutoCAD. Several forming sequences generated by the planning system can be checked by the forming analysis module. The acceptable forming sequences can be verified further, using FE simulation.

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Sequence variant of Hop Stunt Viroid(HSVd) detected from Plum trees cultivated in Korea and Phylogenetic Analysis

  • Lee, Sung-Joon;Hwang, Seung-Lark;Kwon, Tae-Young;Lee, Jai-Youl
    • Proceedings of the Korean Society of Plant Pathology Conference
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    • 2003.10a
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    • pp.143.1-143
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    • 2003
  • Hop stunt viroid(HSVd) is a plant pathogen which infect a number of hosts such as grapevine, Citrus and Prunus plants. Sequence variants of HSVd have been divided into three types(i. grapevine and hop, ii. citrus, iii. plum, peach, apricot and almond). Purified RNAs from plum trees were used for the synthesis of cDNA with reverse transcription and amplified by polymerase chain reaction. Cloned cDNAs were sequenced and two different consensus sequence variants were detected. A neighbor-joining analysis was carried out on the sequence variants together with 62 previously described variants of HSVd from hop, plum and other species. Sequence variants from plum trees cultivated in Korea were clustered in HSVd-plum subtype and not in HSVd-hop subtype which were two Korean isolates belongs. These relationship between sequence variants from plum and two Korean isolates in HSVd-hop type supports the other origin for hop stunt disease.

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The Complete Genome Sequence of Southern rice black-streaked dwarf virus Isolated from Vietnam

  • Dinh, Thi-Sau;Zhou, Cuiji;Cao, Xiuling;Han, Chenggui;Yu, Jialin;Li, Dawei;Zhang, Yongliang
    • The Plant Pathology Journal
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    • v.28 no.4
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    • pp.428-432
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    • 2012
  • We determined the complete genome sequence of a Vietnamese isolate of Southern rice black-streaked dwarf virus (SRBSDV). Whole genome comparisons and phylogenetic analysis showed that the genome of the Vietnamese isolate shared high nucleotide sequence identities of over 97.5% with those of the reported Chinese isolates, confirming a common origin of them. Moreover, the greatest divergence between different SRBSDV isolates was found in the segments S1, S3, S4 and S6, which differs from the sequence alignment results between SRBSDV and Rice black streaked dwarf virus (RBSDV), implying that SRBSDV evolved in a unique way independent of RBSDV. This is the first report of a complete nucleotide sequence of SRBSDV from Vietnam and our data provides new clues for further understanding of molecular variation and epidemiology of SRBSDV in Southeast Asia.

Comparative Analysis of Protocol Test Sequence Generation Methods for Conformance Testing (적합성시험을 위한 프로토콜 시험항목 생성방법의 비교분석)

  • Kim, Chul
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
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    • v.10 no.4
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    • pp.325-332
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    • 2017
  • In this paper, a survey of test sequence generation methods for testing the conformance of a protocol implementation to its specification is presented. The best known methods proposed in the literature are called transition tour, distinguishing sequence, characterizing sequence, and unique input/output sequence. Also, several variants of the above methods are introduced. Applications of these methods to the finite state machine model are discussed. Then, comparative analysis of the methods is made in terms of test sequence length. Finally, conclusions are given as follows. The T-method produces the shortest test sequence, but it has the worst fault coverage. The W-method tends to produce excessively long test sequences even though its fault coverage is complete. The problem with the DS-method is that a distinguishing sequence may not exist. The UIO-method is more widely applicable, but it does not provide the same fault coverage as the DS-method.

Sequence Variation in Superoxide Dismutase Gene of Toxoplasma gondii among Various Isolates from Different Hosts and Geographical Regions

  • Wang, Shuai;Cao, Aiping;Li, Xun;Zhao, Qunli;Liu, Yuan;Cong, Hua;He, Shenyi;Zhou, Huaiyu
    • Parasites, Hosts and Diseases
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    • v.53 no.3
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    • pp.253-258
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    • 2015
  • Toxoplasma gondii, an obligate intracellular protozoan parasite of the phylum Apicomplexa, can infect all warm-blooded vertebrates, including humans, livestock, and marine mammals. The aim of this study was to investigate whether superoxide dismutase (SOD) of T. gondii can be used as a new marker for genetic study or a potential vaccine candidate. The partial genome region of the SOD gene was amplified and sequenced from 10 different T. gondii isolates from different parts of the world, and all the sequences were examined by PCR-RFLP, sequence analysis, and phylogenetic reconstruction. The results showed that partial SOD gene sequences ranged from 1,702 bp to 1,712 bp and A + T contents varied from 50.1% to 51.1% among all examined isolates. Sequence alignment analysis identified total 43 variable nucleotide positions, and these results showed that 97.5% sequence similarity of SOD gene among all examined isolates. Phylogenetic analysis revealed that these SOD sequences were not an effective molecular marker for differential identification of T. gondii strains. The research demonstrated existence of low sequence variation in the SOD gene among T. gondii strains of different genotypes from different hosts and geographical regions.