• Title/Summary/Keyword: search functions

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Genomic Structure of the Cu/Zn Superoxide Dismutase(SOD1) Gene from the Entomopathogenic Fungus, Cordyceps pruinosa

  • Park, Nam Sook;Jin, Byung Rae;Lee, Sang Mong
    • International Journal of Industrial Entomology and Biomaterials
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    • v.39 no.2
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    • pp.67-73
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    • 2019
  • The genomic structure of the Cu/Zn superoxide dismutase (SOD1) gene from the entomopathogenic fungus, Cordyceps pruinosa was characterized. The SOD1 gene of C. pruinosa spans 947 nucleotides and consisted of four exons encoding for 154 amino acids and three introns. Four exons of the SOD1 gene are composed of 13, 331, 97 and 20 nucleotides respectively. Homology search of amino acid sequences of the SOD1 gene of C. pruinosa with another 13 fungi species showed higher sequence similarity of 69% ~ 95% and had the most highest sequence identity of 95% with Beauveria bassiana and Cordyceps militaris, which can easely infect domesticated Bombyx mori and another wild lepidopteran species in artificial or natual manner of infection. This SOD1 gene sequence showed copper, zinc and beta-barrel fold sites. Homology search showed that the Cu/Zn SOD1 gene from the entomopathogenic fungus, C. pruinosa is an orthologous gene homolog present in different species of organism whose ancestor predates the split between the relating species. In addition, C. pruinosa SOD1 gene is placed together within the ascomycetes group of fungal clade. From these results it is concluded that C. pruinosa SOD1 gene is orthologous gene having the same or very similar functions with a common evolutionary ancestor.

Structure function relationships amongst the purple acid phosphatase family of binuclear metal-containing enzymes

  • Hamilton, Susan
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2003.10a
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    • pp.5-5
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    • 2003
  • The purple acid phosphatases comprise a family of binuclear metal-containing enzymes. The metal centre contains one ferric ion and one divalent metal ion. Spectroscopic studies of the monomeric, ${\sim}$36 kDa mammalian purple acid phosphatases reveal the presence of an Fe(III)Fe(II) centre in which the metals are weakly antiferromagnetically coupled, whereas the dimeric, ${\sim}$110 000 kDa plant enzymes contain either Fe(III)Zn(II) or Fe(III)Mn(II). The three dimensional structures of the red kidney bean and pig enzymes show very similar arrangements of the metal ligands but some significant differences beyond the immediate vicinity of the metals. In addition to the catalytic domain, the plant enzyme contains a second domain of unknown function. A search of sequence databases was undertaken using a sequence pattern which includes the conserved metal-binding residues in the plant and animal enzymes. The search revealed the presence in plants of a 'mammalian-type' low molecular weight purple acid phosphatase, a high molecular weight form in some fungi, and a homologue in some bacteria. The catalytic mechanism of the enzyme has been investigated with a view to understanding the marked difference in specificity between the Fe-Mn sweet potato enzyme, which exhibits highly efficient catalysis towards both activated and unactivated phosphate esters, and other PAPs, which hydrolyse only activated esters. Comparison of the active site structures of the enzymes reveal some interesting differences between them which may account for the difference. The implications fur understanding the physiological functions of the enzymes will be discussed.

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Optimal sensor placement for mode shapes using improved simulated annealing

  • Tong, K.H.;Bakhary, Norhisham;Kueh, A.B.H.;Yassin, A.Y. Mohd
    • Smart Structures and Systems
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    • v.13 no.3
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    • pp.389-406
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    • 2014
  • Optimal sensor placement techniques play a significant role in enhancing the quality of modal data during the vibration based health monitoring of civil structures, where many degrees of freedom are available despite a limited number of sensors. The literature has shown a shift in the trends for solving such problems, from expansion or elimination approach to the employment of heuristic algorithms. Although these heuristic algorithms are capable of providing a global optimal solution, their greatest drawback is the requirement of high computational effort. Because a highly efficient optimisation method is crucial for better accuracy and wider use, this paper presents an improved simulated annealing (SA) algorithm to solve the sensor placement problem. The algorithm is developed based on the sensor locations' coordinate system to allow for the searching in additional dimensions and to increase SA's random search performance while minimising the computation efforts. The proposed method is tested on a numerical slab model that consists of two hundred sensor location candidates using three types of objective functions; the determinant of the Fisher information matrix (FIM), modal assurance criterion (MAC), and mean square error (MSE) of mode shapes. Detailed study on the effects of the sensor numbers and cooling factors on the performance of the algorithm are also investigated. The results indicate that the proposed method outperforms conventional SA and Genetic Algorithm (GA) in the search for optimal sensor placement.

Design and Implementation of Shopping Mall System based on Image (이미지 기반 쇼핑몰 시스템 설계 및 구현)

  • Ha, Yan
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.11
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    • pp.173-177
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    • 2012
  • This paper proposes a service which searches goods by images and finds a shopping mall site that offers referral services. In the service, images are obtained in various types. For example, paint function, images search based on pattern and shape. For this shopping mall system, it will be modeled using UML use case and class diagram. Also it will be implemented in JSP. It supports functions that searched various types of images by pattern and shape. In addition to features which were mentioned above, we aim to implement a shopping mall system to search and buy goods by improved information searching techniques, ultimately providing a space that realizes user's painting.

Device Description Repository System Based on DDR Simple API

  • Cho, Yong-Soon;Lee, Young-Il;Jung, Hoe-Kyung
    • Journal of information and communication convergence engineering
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    • v.7 no.2
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    • pp.203-208
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    • 2009
  • Recently, improved capabilities of the mobile device is represented in a demand for same level services with the desktop device services but the service that is developed for desktop device is not compatible with mobile devices. To fulfill these demands, it is needed to provide services with considering features of mobile devices. This means that CP(Contents Provider) must do contents transformation in order to make suitable contents on mobile device. For managing some information that is required to do contents transformation, we need the DDR(Device Description Repository) which can store and search a variety of device information to grasp the constraints on the mobile device as compared with desktop devices. Also, defining standard API is required to offer a service regardless of platforms. Hereupon W3C(World Wide Web Consortium) introduced DDR Simple API. However that specifies the limited functions of DDR, which is inevitable to be added for more precise search services. In this paper, we expanded DDR Simple API and implemented DDR that supports DDL(Device Description Language) conversion and storing and searching device information.

A Study on Treatment Methods for Students of the Error In Using ICT (초등학생의 ICT 활용 오류 처치 방안 연구)

  • Ahn, Seong-Hun;Kim, Eun-Ok;Kho, Dae-Ghon
    • The Journal of Korean Association of Computer Education
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    • v.7 no.2
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    • pp.35-46
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    • 2004
  • In this paper, I analyze error cases a learner made during learning using ICT, set up error types, and search for effective treatment methods in order to enhance the effects of ICT education. I search for error case to use the methodology of the study which is observation, interviews, and survey. I set up the error types which is the error type of confusion with functions, that of confusion with concepts, that of barriers in interface interpretation, that caused by psychological anxiety, that according to learner personality patterns, and habitual error type. The biggest frequency of errors was found in the error type of confusion with function and that of confusion with concepts, whose treatment methods were searched for using the web-based Q&A learning. Also, I apply the error treatment methods on the classroom and prove the effect.

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Implementation and Design of a Fuzzy Power System Stabilizer Using an Adaptive Evolutionary Algorithm

  • Hwang, Gi-Hyun;Lee, Min-Jung;Park, June-Ho;Kim, Gil-Jung
    • KIEE International Transactions on Power Engineering
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    • v.3A no.4
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    • pp.181-190
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    • 2003
  • This paper presents the design of a fuzzy power system stabilizer (FPSS) using an adaptive evolutionary algorithm (AEA). AEA consists of genetic algorithm (GA) for a global search capability and evolution strategy (ES) for a local search in an adaptive manner when the present generation evolves into the next generation. AEA is used to optimize the membership functions and scaling factors of the FPSS. To evaluate the usefulness of the FPSS, we applied it to a single-machine infinite bus system (SIBS) and a power system simulator at the Korea Electrotechnology Research Institute. The FPSS displays better control performance than the conventional power system stabilizer (CPSS) for a three-phase fault in heavy load, which is used when tuning FPSS. To show the robustness of the FPSS, it is applied with disturbances such as change of mechanical torque and three-phase fault in nominal and heavy load, etc. The FPSS also demonstrates better robustness than the CPSS. Experimental results indicate that the FPSS has good system damping under various disturbances such as one-line to ground faults, line parameter changes, transformer tap changes, etc.

End-user Computing and End- User Searching (최종이용자컴퓨팅과 최종이용자탐색)

  • 이상복
    • Journal of the Korean BIBLIA Society for library and Information Science
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    • v.7 no.1
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    • pp.171-192
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    • 1994
  • End-user Computing(EUC) is one of the significant developments of the 1980s with the explosive supply of personal computers and application software related to it. EUC can be defined as the direct assumption of system development and data processing tasks by the user of the service for his own direct benefit. This is in contrast to the traditional approach to computing in which user requirement are identified and defined and then turned over to professional system designers and programmers for implementation, with the end-user a relatively passive participant in the process. The traditional approach to system development has two obvious drawbacks. First, there is the problem that something may be lost in translation of the problem as originally formulated by the requestor and as it is implemented by the computer specialists. Second, there is the problem that it can take a longtime as growth of significant workloads within system department staff. EUC is an attempt to compensate for this drawbacks associated with the traditional system department process. It permits the end-user to interact directly with an information system, utilizing user friendly software support tools. End-user Searching(EUS) can be defined as accessing online databases and performing search operations for the purpose of finding information to be used by that same person rather than another, in contract with intermediary searcher. The concept of EUS is related to the concept of EUS. That is, two concept are similarly to development background, effects and functions. Therefore, as EUC bring on a change the traditional data processing environment, EUS also bring on a change the traditional intermediary search environment.

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Application of XML to Develop GUI within Satellite Imageries Search System (위성 영상 검색시스템의 GUI 개발을 위한 XML 적용)

  • Bu, Ki-Dong;Lee, Young-Ju
    • Journal of the Korean Association of Geographic Information Studies
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    • v.5 no.4
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    • pp.65-74
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    • 2002
  • The purpose of this study is to develop an XML based GUI that can search for satellite image information which is converted to XML data format and stored in the database server on the web, and modify and reuse data. In order to implement these functions efficiently, we used a DOM interface of XML that increases the efficiency of accessing the document structure. We used HTML and Java script programming to facilitate this interface. The system was applied to the management system of satellite images in the Research Institute of SFC at Keio University. Our results confirmed the technical functionalities.

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A Study on the Development of Bibliographic Interface Based on the FRBR Model (FRBR 모형에 기반한 서지정보 인터페이스 개발에 관한 연구)

  • Seo, Eun-Gyoung
    • Journal of the Korean Society for information Management
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    • v.23 no.4 s.62
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    • pp.317-339
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    • 2006
  • New concept of bibliographic data and its scheme are needed to accommodate a change resulting from the emergence of new forms of electronic publishing, and the advent of networked access to information resources. FRBR model was developed for defining functions performed by the bibliographic data with respect to various media, various applications, and various user needs. Several institutions including OCLC and RLG or vendors have tried to implement the FRBR on OPAC systems. The purpose of this study is to propose the strategies for developing bibliographic interface based the FRBR model. This study is to review the representative FRBRized systems and compare the systems regarding on search interface and display interface.