• Title/Summary/Keyword: saturation transfer difference

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Discrimination of JNK3 bound small molecules by saturation transfer difference NMR experiments

  • Lim, Jong-Soo;Ahn, Hee-Chul
    • Journal of the Korean Magnetic Resonance Society
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    • v.16 no.1
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    • pp.67-77
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    • 2012
  • The small molecule binding to the c-Jun N-terminal kinase 3 (JNK3) was examined by the measurements of saturation transfer difference (STD) NMR experiments. The STD NMR experiment of ATP added to JNK3 clearly showed the binding of the nucleotide to the kinase. The STD NMR spectrum of dNTPs added to JNK3 discriminated the kinase-bound nucleotide from the unbound ones. After the five-fold addition of ATP to the dNTPs and JNK3 mixture, only signals of the cognate substrate of JNK3, ATP, were observed from the STD NMR experiment. These results signify that by the STD NMR the small molecules bound to JNK3 can be discriminated from the pool of the unbound molecules. Furthermore the binding mode of the small molecule to JNK3 can be determined by the competition experiments with ATP.

Depiction of Acute Stroke Using 3-Tesla Clinical Amide Proton Transfer Imaging: Saturation Time Optimization Using an in vivo Rat Stroke Model, and a Preliminary Study in Human

  • Park, Ji Eun;Kim, Ho Sung;Jung, Seung Chai;Keupp, Jochen;Jeong, Ha-Kyu;Kim, Sang Joon
    • Investigative Magnetic Resonance Imaging
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    • v.21 no.2
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    • pp.65-70
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    • 2017
  • Purpose: To optimize the saturation time and maximizing the pH-weighted difference between the normal and ischemic brain regions, on 3-tesla amide proton transfer (APT) imaging using an in vivo rat model. Materials and Methods: Three male Wistar rats underwent middle cerebral artery occlusion, and were examined in a 3-tesla magnetic resonance imaging (MRI) scanner. APT imaging acquisition was performed with 3-dimensional turbo spin-echo imaging, using a 32-channel head coil and 2-channel parallel radiofrequency transmission. An off-resonance radiofrequency pulse was applied with a Sinc-Gauss pulse at a $B_{1,rms}$ amplitude of $1.2{\mu}T$ using a 2-channel parallel transmission. Saturation times of 3, 4, or 5 s were tested. The APT effect was quantified using the magnetization-transfer-ratio asymmetry at 3.5 ppm with respect to the water resonance (APT-weighted signal), and compared with the normal and ischemic regions. The result was then applied to an acute stroke patient to evaluate feasibility. Results: Visual detection of ischemic regions was achieved with the 3-, 4-, and 5-s protocols. Among the different saturation times at $1.2{\mu}T$ power, 4 s showed the maximum difference between the ischemic and normal regions (-0.95%, P = 0.029). The APTw signal difference for 3 and 5 s was -0.9% and -0.7%, respectively. The 4-s saturation time protocol also successfully depicted the pH-weighted differences in an acute stroke patient. Conclusion: For 3-tesla turbo spin-echo APT imaging, the maximal pH-weighted difference achieved when using the $1.2{\mu}T$ power, was with the 4 s saturation time. This protocol will be helpful to depict pH-weighted difference in stroke patients in clinical settings.

Complete Relaxation and Conformational Exchange Matrix (CORCEMA) Analysis of Saturation Transfer Difference (STD) NMR Spectra of Ligand-Protein Complexes

  • Krishna, N.Rama;Jayalakshmi, V.
    • Journal of the Korean Magnetic Resonance Society
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    • v.6 no.2
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    • pp.94-102
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    • 2002
  • An interesting recent application of intermolecular NOE experiment is the saturation transfer difference NMR(STD-NMR) method that is useful in screening compound libraries to identify bio-active ligands. This technique also identifies the group epitopes of the bound ligand in a reversibly forming protein-ligand complex. We present here a complete relaxation and conformational exchange matrix (CORCEMA) theory (Moseley et al., J. Magn. Reson. B, 108, 243-261 (1995)) applicable for the STD-NMR experiment. Using some ideal model systems we have analyzed the factors that influence the STD intensity changes in the ligand proton NMR spectrum when the resonances from some protons on the receptor protein are saturated. These factors will be discussed and some examples of its application in some model systems will be presented. This CORCEMA theory for STD-NMR and the associated algorithm are useful in a quantitative interpretation of the STD-NMR effects, and are likely to be useful in structure-based drug design efforts. They are also useful in a quantitative characterization of protein-protein (or protein-nucleic acid) contact surfaces from an intermolecular cross-saturation NMR experiment.

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Performance Evaluation of Image Saturation of Thermal Imaging Camera for the Fire Service (화재용 열화상 카메라의 영상포화특성 평가)

  • Kim, Sung-Chan
    • Fire Science and Engineering
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    • v.26 no.2
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    • pp.69-74
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    • 2012
  • Thermal imaging technology based on IR sensor with high transmittance through the fire smoke is considered as one of the advanced technology for the fire service. The present study has been performed to investigate the image saturation characteristics with thermal condition of target and background and evaluate the performance of image quality based on the contrast transfer function (CTF). For the present testing conditions, TIC using BST sensor did not show the image saturation and the image quality based on the CTF was proportional to the temperature difference between target and background. This study can be utilized as preliminary study to improve reliability and technical development of TIC.

The Study on Pressure Oscillation and Heat Transfer Characteristics of Oscillating Capillary Tube Heat Pipe

  • Kim, Jong-Soo;Bui, Ngoc-Hung;Jung, Hyun-Seok;Lee, Wook-Hyun
    • Journal of Mechanical Science and Technology
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    • v.17 no.10
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    • pp.1533-1542
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    • 2003
  • In the present study, the characteristics of pressure oscillation and heat transfer performance in an oscillating capillary tube heat pipe were experimentally investigated with respect to the heat flux, the charging ratio of working fluid, and the inclination angle to the horizontal orientation. The experimental results showed that the frequency of pressure oscillation was between 0.1 Hz and 1.5 Hz at the charging ratio of 40 vol.%. The saturation pressure of working fluid in the oscillating capillary tube heat pipe increased as the heat flux was increased. Also, as the charging ratio of working fluid was increased, the amplitude of pressure oscillation increased. When the pressure waves were symmetric sinusoidal waves at the charging ratios of 40 vol.% and 60 vol.%, the heat transfer performance was improved. At the charging ratios of 20 vol.% and 80 vol.%, the waveforms of pressure oscillation were more complicated, and the heat transfer performance reduced. At the charging ratio of 40. vol.%, the heat transfer performance of the OCHP was at the best when the inclination angle was 90$^{\circ}$ the pressure wave was a sinusoidal waveform, the pressure difference was at the least, the oscillation amplitude was at the least, and the frequency of pressure oscillation was the highest.

Experimental Study on Heat Transfer Characteristics of HFC134a for Enhanced Tubes Used in a Flooded Evaporator (HFC134a 만액식 증발전열관 외부형상 변화에 따른 열전달 특성실험)

  • Yang, Seung-Woo;Lee, Young-Su;Jeong, Jin-Hee;Kang, Yong-Tae
    • Korean Journal of Air-Conditioning and Refrigeration Engineering
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    • v.18 no.12
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    • pp.971-976
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    • 2006
  • The objectives of this paper are to study the characteristics of pool boiling heat transfer for enhanced tubes used in the evaporator of turbo chiller and to provide a guideline for optimum design of an evaporator using HFC134a. Three different enhanced tubes are tested at 4 different saturation temperatures. The wall super heated temperature difference ranges from $0.5^{\circ}C\;to\;3.5^{\circ}C$. The refrigerant, HFC134a evaporates on the outside of the tube while the chilled water flows inside the tube. This study provides experimental heat transfer coefficients for evaporation on the enhanced tubes. It is found that the turbo-II tube provides the highest heat transfer coefficient.

Physical Modeling of Chemical Exchange Saturation Transfer Imaging

  • Jahng, Geon-Ho;Oh, Jang-Hoon
    • Progress in Medical Physics
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    • v.28 no.4
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    • pp.135-143
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    • 2017
  • Chemical Exchange Saturation Transfer (CEST) imaging is a method to detect solutes based on the chemical exchange of mobile protons with water. The solute protons exchange with three different patterns, which are fast, slow, and intermediate rates. The CEST contrast can be obtained from the exchangeable protons, which are hydroxyl protons, amine protons, and amide protons. The CEST MR imaging is useful to evaluate tumors, strokes, and other diseases. The purpose of this study is to review the mathematical model for CEST imaging and for measurement of the chemical exchange rate, and to measure the chemical exchange rate using a 3T MRI system on several amino acids. We reviewed the mathematical models for the proton exchange. Several physical models are proposed to demonstrate a two-pool, three-pool, and four-pool models. The CEST signals are also evaluated by taking account of the exchange rate, pH and the saturation efficiency. Although researchers have used most commonly in the calculation of CEST asymmetry, a quantitative analysis is also developed by using Lorentzian fitting. The chemical exchange rate was measured in the phantoms made of asparagine (Asn), glutamate (Glu), ${\gamma}-aminobutyric$ acid (GABA), glycine (Gly), and myoinositol (MI). The experiment was performed at a 3T human MRI system with three different acidity conditions (pH 5.6, 6.2, and 7.4) at a concentration of 50 mM. To identify the chemical exchange rate, the "lsqcurvefit" built-in function in MATLAB was used to fit the pseudo-first exchange rate model. The pseudo-first exchange rate of Asn and Gly was increased with decreasing acidity. In the case of GABA, the largest result was observed at pH 6.2. For Glu, the results at pH 5.6 and 6.2 did not show a significant difference, and the results at pH 7.4 were almost zero. For MI, there was no significant difference at pH 5.6 or 7.4, however, the results at pH 6.2 were smaller than at the other pH values. For the experiment at 3T, we were only able to apply 1 s as the maximum saturation duration due to the limitations of the MRI system. The measurement of the chemical exchange rate was limited in a clinical 3T MRI system because of a hardware limitation.

$^1H$ NMR Estimation of Multi-Redox potentials of Cytochrome $c_3$ from Desulfovibrio vulgaris Hildenborough

  • 박장수;강신원;최성낙
    • Bulletin of the Korean Chemical Society
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    • v.16 no.4
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    • pp.331-336
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    • 1995
  • The macroscopic and microscopic redox potentials of tetrahemoprotein, cytochrome c3 from Desulfovibrio vulgaris(Hildenborough) (DvH) were estimated from 1H NMR and differential pulse polarography(DPP). Five sets of NMR resonances were confirmed by a redox titration. They represent cytochrome c3 molecules in five macroscopic redox states. The electron transfer in cytochrome c3 involves four consecutive one-electron steps. The saturation transfer method was used to determine the chemical shifts of eight heme methyl resonances in five different oxidation states. Thirty two microscopic redox potentials were estimated. The results showed the presence of a strong positive interaction between a pair of particular hemes. Comparing the results with those of Desulfovibrio vulgaris Miyazaki F (DvMF), it was observed that the two proteins resemble each other in overall redox pattern, but there is small difference in the relative redox potentials of four hemes.

An Experimental Study on the affect of Non-condensable Gas Quantity on the Heat Transfer Performances in a Variable Conductance Heat Pipe (VCHP에서 불응축 가스량이 열전달 성능에 미치는 영향에 관한 실험적 연구)

  • Park, K.H.;Lee, K.W.;Lee, W.H.;Lee, K.J.;Suh, J.S.
    • Proceedings of the KSME Conference
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    • 2003.11a
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    • pp.19-24
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    • 2003
  • This paper is to research the heat transfer characteristic in copper-water variable conductance heat pipes(VCHP) with a non-condensable gas and gas reservoir. The heat transfer characteristics in the VCHP have not yet been studied much researches. VCHP are used in many applications. These applications range from thermal control of components and systems on satellites, to precise temperature calibration duties, conventional electronics temperature control and thermal diodes. The practical use of VCHP is a simple way to control the temperature of satellites. As the quantity of NCG was increased, there was an increase in the saturation vapor temperatures. As the input heat has loaded from 90 W to 110 W, the difference of the evaporator surface is lower than $10^{\circ}C$.

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