• 제목/요약/키워드: sample enrichment

검색결과 121건 처리시간 0.022초

Improved Detection of Multi-phosphorylated Peptides by LC-MS/MS without Phosphopeptide Enrichment

  • Kim, Suwha;Choi, Hyunwoo;Park, Zee-Yong
    • Molecules and Cells
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    • 제23권3호
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    • pp.340-348
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    • 2007
  • Although considerable effort has been devoted in the mass spectrometric analysis of phosphorylated peptides, successful identification of multi-phosphorylated peptides in enzymatically digested protein samples still remains challenging. The ionization behavior of multi-phosphorylated peptides appears to be somewhat different from that of mono- or di-phosphorylated peptides. In this study, we demonstrate increased sensitivity of detection of multi-phosphorylated peptides of beta casein without using phosphopeptide enrichment techniques. Proteinase K digestion alone increased the detection limit of beta casein multi-phosphorylated peptides in the LC-MS analysis almost 500 fold, compared to conventional trypsin digestion (~50 pmol). In order to understand this effect, various factors affecting the ionization of phosphopeptides were investigated. Unlike ionizations of phosphopeptides with minor modifications, those of multi-phosphorylated peptides appeared to be subject to effects such as selectively suppressed ionization by more ionizable peptides and decreased ionization efficiency by multi-phosphorylation. The enhanced detection limit of multi-phosphorylated peptides resulting from proteinase K digestion was validated using a complex protein sample, namely a lysate of HEK 293 cells. Compared to trypsin digestion, the numbers of phosphopeptides identified and modification sites per peptide were noticeably increased by proteinase K digestion. Non-specific proteases such as proteinase K and elastase have been used in the past to increase detection of phosphorylation sites but the effectiveness of proteinase K digestion for multi-phosphorylated peptides has not been reported.

모링가 분말을 첨가한 스펀지케이크의 품질특성 (The Characteristics of Sponge Cake with Moringa Powder)

  • 최형일
    • 한국조리학회지
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    • 제24권3호
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    • pp.188-195
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    • 2018
  • The objective of this study was to evaluate the quality characteristics of moringa powder enrichment in sponge cake. The developed product can be a promising inclusion in the functional foods. Moringa powder was added to sponge cake batter (in the ratios of 0, 3, 6, 9, 12% of the total flour), called MP3, MP6, MP9, and MP12 respectively. The effect of moringa supplementation on physical, chemical and sensory quality of cakes were evaluated and analyzed statistically using SPSS program. The pH of cake was decreased as the concentration of moringa powder added. The specific volume of cake samples decreased with increasing levels of moringa powder in the formulation. Colour measurements showed that lightness and yellowness were decreased with an increased level of moringa powder. But redness result revealed and increasing in redeness with the increasing morigna powder level, compared to the control sample. The results of texture profile analysis showed hardness, springness, cohesiveness of the moringa cake that were higher than control sample. In sensory evaluation, MP3 was selected as the most acceptable sample. In the conclusion, moringa powder was incorporated in the formulation to enrich sponge cakes and was suggested for development of functional foods.

황 산화를 통해 퍼클로레이트를 분해하는 미생물 군집 분석 (Analysis of a Sulfur-oxidizing Perchlorate-degrading Microbial Community)

  • 김영화;한경림;황희재;권혁준;김예림;김건우;김희주;손명화;최영익;성낙창;안영희
    • 생명과학회지
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    • 제26권1호
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    • pp.68-74
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    • 2016
  • 퍼클로레이트(ClO4)는 지표수 및 토양/지하수에서 검출되는 신규 오염물이다. 이전 연구에서 저렴한 원소 황(elemental sulfur, S0) 입자와 쉽게 구할 수 있는 활성슬러지를 이용하여 독립영양방식으로 ClO4를 제거할 수 있다는 실험적 증거가 제시되었다. 또한 식종균으로서 농화배양 미생물을 사용했을 때 활성슬러지보다 제거효율과 시간면에서 우수한 결과를 나타내었다. 그래서 본 연구에서는 황을 산화하여 독립영양방식으로 ClO4를 분해하는 농화배양 미생물 군집을 PCR-DGGE로 분석하였다. 이 농화배양 미생물은 초기농도가 약 120 mg ClO4/l 일 때 7일 후 99.71% 이상의 ClO4- 제거 효율을 나타내었다. 농화배양 미생물과 그것의 식종균으로 부터 genomic DNA를 추출하여 16S rRNA 유전자의 PCR-DGGE 분석에 사용하였다. PCR-DGGE 분석결과 농화배양 미생물과 식종균 시료들이 다른 밴드패턴을 나타냄에 따라 이 두 시료의 군집조성이 다름을 확인하였다. 이는 농화배양되는 동안 식종된 미생물이 그 환경에 잘 생장하는 미생물로 군집조성이 변화한 것으로 여겨진다. 농화배양 미생물군집에는 β-Proteobacteria, Bacteroidetes, 그리고 Spirochaetes 강에 속하는 개체군들이 우점하는 것으로 나타났다. 향후 이 우점 개체군들의 순수분리와 더불어 황 산화를 통한 ClO4 분해 환경에서 이들의 대사적 역할을 규명할 필요가 있다.

Isotachophoretically Assisted On-Line Complexation of Trace Metal Ions in a Highly Saline Matrix for Capillary Electrophoresis

  • Kim, Ji-Hye;Choi, Ki-Hwan;Cho, Sun-Young;Riaz, Asif;Chung, Doo-Soo
    • Bulletin of the Korean Chemical Society
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    • 제33권3호
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    • pp.790-794
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    • 2012
  • Trace metal ions such as $Cd^{2+}$, $Ni^{2+}$, and $Zn^{2+}$ in a highly saline sample were subjected to on-line complexation with 4-(2-thiazolylazo) resorcinol (TAR) dissolved in a background electrolyte (BGE) under transient isotachophoresis (TITP) conditions. A long plug of the saline sample, containing the trace metal ions but devoid of TAR, was injected into a coated capillary filled with a BGE composed of 150 mM 2-(cyclohexylamino) ethanesulfonic acid (CHES) and 110 mM triethylamine (TEA) at pH 9.7. Since the electrophoretic mobility of TAR fell between the mobilities of the anionic leading electrolyte ($Cl^-$ in the sample) and the anionic terminating background electrolyte ($CHES^-$), a highly concentrated zone of TAR from the BGE was formed at the rear of the sample matrix and then the metal cations toward the cathode were swept by isotachophoretically assisted on-line complexation (IAOC) between the metal ions and the isotachophoretically stacked TAR. As a result, anionic metal-TAR complexes were formed efficiently, which satisfy the TITP conditions between $Cl^-$ and $CHES^-$. The enrichment factors of metal ions including $Cd^{2+}$ were up to 780-fold compared to a conventional CZE mode using absorbance detection. The detection limits were 17 nM, 15 nM, and 27 nM for $Ni^{2+}$, $Zn^{2+}$, and $Cd^{2+}$ in a 250 mM NaCl matrix, respectively. Our method was successfully applied to the analysis of urine samples without desalting.

Determination of Non-Steroidal Anti-Inflammatory Drugs in Human Urine Sample using HPLC/UV and Three Phase Hollow Fiber-Liquid Phase Microextraction (HF-LPME)

  • Cha, Yong Byoung;Myung, Seung-Woon
    • Bulletin of the Korean Chemical Society
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    • 제34권11호
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    • pp.3444-3450
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    • 2013
  • Three phase hollow fiber-liquid phase microextraction (HF-LPME), which is faster, simpler and uses a more environmentally friendly sample-preparation technique, was developed for the analysis of Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) in human urine. For the effective simultaneous extraction/concentration of NSAIDs by three phase HF-LPME, parameters (such as extraction organic solvent, pH of donor/acceptor phase, stirring speed, salting-out effect, sample temperature, and extraction time) which influence the extraction efficiency were optimized. NSAIDs were extracted and concentrated from 4 mL of aqueous solution at pH 3 (donor phase) into dihexyl ether immobilized in the wall pores of a porous hollow fiber, and then extracted into the acceptor phase at pH 13 located in the lumen of the hollow fiber. After the extraction, 5 ${\mu}L$ of the acceptor phase was directly injected into the HPLC/UV system. Simultaneous chromatographic separation of seven NSAIDs was achieved on an Eclipse XDB-C18 (4.6 mm i.d. ${\times}$ 150 mm length, 5 ${\mu}m$ particle size) column using isocratic elution with 0.1% formic acid and methanol (30:70) at a HPLC-UV/Vis system. Under optimized conditions (extraction solvent, dihexyl ether; $pH_{donor}$, 3; $pH_{acceptor}$, 13; stirring speed, 1500 rpm; NaCl salt, 10%; sample temperature, $60^{\circ}C$; and extraction time, 45 min), enrichment factors (EF) were between 59 and 260. The limit of detection (LOD) and limit of quantitation (LOQ) in the spiked urine matrix were in the concentration range of 5-15 ng/mL and 15-45 ng/mL, respectively. The relative recovery and precision obtained were between 58 and 136% and below 15.7% RSD, respectively. The calibration curve was linear within the range of 0.015-0.96 ng/mL with the square of the correlation coefficient being more than 0.997. The established method can be used to analyse of NSAIDs of low concentration (ng/mL) in urine.

Continuous Preconcentration of Sn2+/Sn4+ by the On-line Sulfide Precipitation-Dissolution

  • Yeon, Pyung-Heum;Yoon, Young-Suk;Oh, Se-Woung;Nam, Sang-Ho;Par, Yong-Nam
    • Bulletin of the Korean Chemical Society
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    • 제25권8호
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    • pp.1156-1160
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    • 2004
  • The technique of an on-line preconcentration by the direct sulfide precipitation has been developed. Sn was homogeneously precipitated by sulfide, which was generated in situ from the hydrolysis of thioaceteamide. Precipitate was collected on a filter in the line and dissolved out instantaneously by KOH to be sent to an ICP. The enrichment factor was 4 with the sampling speed of 15/hr for 1.0 mL of sample. It was increased to more than 40 times when the sampling volume was increased to 10 mL with the sampling speed of 5/hr. $Sn^{2+}/Sn^{4+}$ could be separately determined with the on-line precipitation technique. The method was applied to the analysis of NIST SRM 1566 Oyster sample and yielded good agreement with the certified value.

Globular Cluster Systems of Early-type Galaxies in Low-density Environments

  • Cho, Jae-Il;Sharples, Ray
    • 한국우주과학회:학술대회논문집(한국우주과학회보)
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    • 한국우주과학회 2010년도 한국우주과학회보 제19권1호
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    • pp.34.4-34.4
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    • 2010
  • We present the properties of globular cluster systems for 10 early-type galaxies in low density environments obtained using deep images from the Advanced Camera for Surveys (ACS) on the Hubble Space Telescope (HST). Using the ACS Virgo Cluster Survey as a counterpart in high-density environments, we investigate the role of environment in determining the properties of their globular cluster systems. We detect a strong colour bimodality of globular cluster systems in half of our galaxy sample. It is found that there is a strong correlation between the colour and richness of globular cluster populations and their host galaxy luminosities: the less bright galaxies possess bluer and fewer globular clusters as also seen in rich cluster environments. However, the mean colour of globular clusters in our field sample are slightly bluer than those in cluster environments at a given galaxy luminosity, and the colour of the red population has a steeper slope with absolute luminosity. By employing the YEPS simple stellar population model, the colour offset corresponds to metallicity difference of $\Delta$[F e/H ] ~ 0.15 - 1.20 or an age difference of $\Delta$age ~ 2 Gyr on average, implying that GCs in field galaxies appear to be either less metal-rich or younger than those in cluster galaxies. Although we have found that galaxy environment has a subtle effect on the formation and metal enrichment of GC systems, host galaxy mass is the primary factor that determines the stellar populations of GCs and the galaxy itself.

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수포작용제(HD) 분석을 위한 단일방울 미세농축법 연구 (Single Drop Microextraction for Analysis of Mustard Gas(HD))

  • 박양기;김성기;손병훈;박명주
    • 한국군사과학기술학회지
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    • 제11권2호
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    • pp.95-100
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    • 2008
  • A fast, simple, inexpensive, and reproducible sample preparation for extraction and analysis of HD in water was studied using single-drop microextraction(SDME) and GC-MS. Operation parameters, such as extraction solvent, extraction time were optimized. The optimized conditions were $1\{mu}L$ trichloroethylene and 10 min extraction time. In these conditions, about 42 times higher enrichment factor(EF) was obtained. The detection limit of HD was $1\{mu}g/L$, and the precision expressed as relative standard deviation was about 9.0%.

Relative merits of different types of multi-wavelength observations to constrain galaxy physical parameter

  • Pacifici, Camilla
    • 천문학회보
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    • 제38권2호
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    • pp.35.2-35.2
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    • 2013
  • I will present a new approach to constrain galaxy physical parameters from the combined interpretation of stellar and nebular emission in wide ranges of observations. This approach relies on a comprehensive library of synthetic spectra, assembled using state-of-the-art models of star formation and chemical enrichment histories, stellar population synthesis, nebular emission and attenuation by dust. We focus on the constraints set by 5-band photometry and low- and medium-resolution spectroscopy at optical rest wavelengths on a few physical parameters characterizing the stars and interstellar medium. Since these parameters cannot be known a priori for any galaxy sample, we assess the accuracy to which they can be retrieved by simulating 'pseudo-observations' using models with known parameters. We find that the combined analysis of stellar and nebular emission in low-resolution (50A FWHM) galaxy spectra provides valuable constraints on all physical parameters. The approach can be extended to the analysis of any type of observation and during this talk i will present some applications to observed galaxies up to redshift 1.5.

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Phenol 분해균주 Klebsiella pneumoniae의 분리 및 특성 (Isolation and Characterization of a Phenol-degrading Strain, Klebsiella pneumoniae)

  • 노종수;이헌모
    • 환경위생공학
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    • 제15권1호
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    • pp.34-38
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    • 2000
  • In the screening of phenol-degrading bacteria, a strain showing good growth in media containing phenol was isolated by using enrichment culture from various sample and identified as genus Klebsiella pneumoniae. The optimal temperature and pH for cell growth of Klebsiella pneumoniae was $35^{\circ}C$ and 8.0, respectively. When phenol was added to the minimal media as a sole source of carbon and energy, the concentration of maximum and optimum for cell growth was 1,200ppm and 1,000ppm, respectively. It was observed that Klebsiella pneumoniae was able to degrade 98% of phenol (1,000ppm) after 40hr in culture. The isolated could utilize various kinds of aromatic compounds and showed good growth in presence of phenol, m-cresol and 3-methyl catechol.

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