• Title/Summary/Keyword: ring structure

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2D-QSAR and HQSAR on the Inhibition Activity of Protein Tyrosine Phosphatase 1B with Oleanolic Acid Analogues

  • Chung, Young-Ho;Jang, Seok-Chan;Kim, Sang-Jin;Sung, Nack-Do
    • Journal of Applied Biological Chemistry
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    • v.50 no.2
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    • pp.52-57
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    • 2007
  • Quantitative structure-activity relationships (QSARs) on the inhibition activities by oleanolic acid analogues (1-19) as a potent inhibitor against protein tyrosine phosphatase-1B were studied quantitatively using 2D-QSAR and HQSAR methodologies. The inhibition activity was dependent on the variations of $R_{4-}$substituent, and as shown in 2D-QSAR model ($r^2=0.928$), it has a tendency to increase as the negative Randic Indice (RI) goes up. The size of the molecular fragments used in HQSAR varied from five to eight. The fragment distinctions had the best statistic value, whose predictability is $q^2=0.785$ and correlation coefficient is $r^2=0.970$, on condition of connections. From the atomic contribution maps, the factor that contributes to the inhibition activities is the $C_{15}{\sim}C_{17}$ bond in the D ring. From the analysis result of these two the models, the structural distinctions and descriptors that contribute to the inhibition activities were obtained.

Endophytic Diaporthe sp. ED2 Produces a Novel Anti-Candidal Ketone Derivative

  • Yenn, Tong Woei;Ring, Leong Chean;Nee, Tan Wen;Khairuddean, Melati;Zakaria, Latiffah;Ibrahim, Darah
    • Journal of Microbiology and Biotechnology
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    • v.27 no.6
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    • pp.1065-1070
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    • 2017
  • This study aimed to examine the anti-candidal efficacy of a novel ketone derivative isolated from Diaporthe sp. ED2, an endophytic fungus residing in medicinal herb Orthosiphon stamieus Benth. The ethyl acetate extract of the fungal culture was separated by open column and reverse phase high-performance liquid chromatography (HPLC). The eluent at retention time 5.64 min in the HPLC system was the only compound that exhibited anti-candidal activity on Kirby-Bauer assay. The structure of the compound was also elucidated by nuclear magnetic resonance and spectroscopy techniques. The purified anti-candidal compound was obtained as a colorless solid and characterized as 3-hydroxy-5-methoxyhex-5-ene-2,4-dione. On broth microdilution assay, the compound also exhibited fungicidal activity on a clinical strain of Candida albicans at a minimal inhibitory concentration of $3.1{\mu}g/ml$. The killing kinetic analysis also revealed that the compound was fungicidal against C. albicans in a concentration- and time-dependent manner. The compound was heat-stable up to $70^{\circ}C$, but its anti-candidal activity was affected at pH 2.

The Mechanical Dither Design of Navigation Guide Structure (네비게이션 가이드 구조물의 기계적 진동설계)

  • Lee, Jeong-Ick
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.11 no.6
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    • pp.1949-1954
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    • 2010
  • The gyroscopes have been used as a suitable inertial instrument for the navigation guidance and attitude controls. The accuracy as very sensitive sensor is limited by the lock-in region(dead band) due to the frequency coupling between two counter-propagating waves at low rotation rates. This frequency coupling gives no phase difference, and an angular increment is not detected. This problem can be overcome by mechanically dithering the gyroscope. This paper presents the design method of mechanical dither by the theoretical considerations and the verification of the theoretical equations through FEM(Finite Element Method) applications. As a result, the maximum prediction error of resonant frequency and peak dither rate was under 5 percent. The theoretical equations for the mechanical performances of dither can be said to be feasible.

Synthesis of α-oximinoketones, Precursor of CO2 Reduction Macrocyclic Coenzyme F430 Model Complexes

  • Kim, Gilhoon;Won, Hoshik
    • Journal of the Korean Magnetic Resonance Society
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    • v.21 no.4
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    • pp.139-144
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    • 2017
  • Ni(II) containing coenzyme F430 catalyzes the reduction of $CO_2$ in methanogen. Macrocyclic Ni(II) complexes with N,O shiff bases have been received a great attention since metal ions play an important role in the catalysis of reduction. The reducing power of metal complexes are supposed to be dependent on oxidoreduction state of metal ion and structural properties of macrocyclic ring moiety that can enhance electrochemical properties in catalytic process. Six different ${\alpha}$-oximinoketone compounds, precursor of macrocyclic ligands used in $CO_2$ reduction coenzyme F430 model complexes, were synthesized with yields over 90% and characterized by NMR. The molecular geometries of ${\alpha}$-oximinoketone analogues were fully optimized at Beck's-three-parameter hybrid (B3LYP) method in density functional theory (DFT) method with $6-31+G^*$ basis set using the ab initio program. In order to understand molecular planarity and substitutional effects that may enhance reducing power of metal ion are studied by computing the structure-dependent $^{13}C$-NMR chemical shift and comparing with experimental results.

Permittivity Characteristic Analysis of Planar Substrates Using H-shaped Resonant Aperture (H-모양 공진 개구를 이용한 평면 기판의 유전율 특성 분석)

  • Yeo, Junho;Lee, Jong-Ig
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2018.05a
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    • pp.55-56
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    • 2018
  • In this paper, a method for analyzing the dielectric constant of a planar substrate is proposed. To this end, a band-stop filter was created by adding a H-shaped resonant aperture to the ground plane of a microstrip transmission line. A planar substrate of 2 mm thickness was placed behind the ground plane of the microstrip transmission line and the change of the resonant frequency with the change of the dielectric constant of the substrate was investigated. It can be seen that the change ratio of the frequency to the reference resonant frequency is larger than that of the conventional complementary split ring resonator structure.

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PROPERTIES OF ZR ALLOY CLADDING AFTER SIMULATED LOCA OXIDATION AND WATER QUENCHING

  • Kim, Hyun-Gil;Kim, Il-Hyun;Jung, Yang-Il;Park, Jeong-Yong;Jeong, Yong-Hwan
    • Nuclear Engineering and Technology
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    • v.42 no.2
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    • pp.193-202
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    • 2010
  • In order to study the cladding properties of zirconium after a loss-of-coolant accident (LOCA)-simulation oxidation and water quenching test, commercial Zircaloy-4 and two kinds of HANA claddings were oxidized at temperatures ranging from $900^{\circ}C$ to $1250^{\circ}C$ and exposed for 300 s, and then cooled to $700^{\circ}C$ before quenching. Microstructural observations were made to evaluate the matrix characteristics with the chemical compositions after the LOCA-simulation test. Ring compression testing was then performed to compare the ductile behaviour of the HANA and Zircaloy-4 claddings. An X-ray diffraction (XRD) analysis was carried out for temperatures ranging from room temperature to $1250^{\circ}C$ for the oxide layer to verify the oxide crystal structure at each oxidation temperature.

Fractionation of Extracellular Cellulase Pproduced by Cellulomonas and Reaction Mechanisms of the Isolated Enzymes (Cellulomonas가 생산하는 균체의 Cellulase의 분리 및 분리된 효소의 작용기작)

  • Kim Byung Hong;Wimpenny, J.W.T.
    • Korean Journal of Microbiology
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    • v.23 no.1
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    • pp.25-33
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    • 1985
  • The cell-free cellulolytic enzyme was separated into 3 different enzyme proteins by gel-filtration and ion-exchange chromatography. These fractions were named enzyme A, enzyme B and enzyme C. The mode of action of each of the separated enzymes on crystalline cellulose was examined using infrared spectroscopy and X-ray crystallography. It was concluded that enzyme B is of the $C_1-type$ and reduces the crystallinity of the subatrate by generation an unstable glucopyranose ring structure, whilst enzymes A and C are of the $C_x-type$ and hydrolyse the reaction product of enzyme B to constituent sugars. A reaction scheme for this cellulase system is proposed and discussed.

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Application of Molecular Mechanics to the Structure of 1,6-Anhydropyranoses (1,6-Anhydropyranose의 분자구조의 역학적응용)

  • George A. Jeffrey;Young Ja Park
    • Journal of the Korean Chemical Society
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    • v.23 no.4
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    • pp.206-209
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    • 1979
  • Empirical force-field calculations have been applied to eight 1,6-anhydropyra-noses, the crystal structures$^{13{\sim}21}$ of which have been studied by single crystal X-ray or neutron diffraction analysis. The theoretical calculations reproduce closely the variations in conformation between $^1C_4$ and $E_0$, which are observed in the pyranose rings. The smaller conformational differences in the five-membered anhydro ring are not so well predicted. The calculated C-C bond lengths agree with those observed within 0.012${\AA}$ with one exception. The C-O bond lengths show a larger deviation, 0.027${\AA}$. The non-hydrogen atom valence angles agree within 1.9$^{\circ}$.

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Structural and Spectroscopic Investigation of Ceria Nanofibers Fabricated by Electrospinning Process

  • Hwang, Ah-Reum;Park, Ju-Yun;Kang, Yong-Cheol
    • Bulletin of the Korean Chemical Society
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    • v.32 no.9
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    • pp.3338-3342
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    • 2011
  • We fabricated ceria ($CeO_2$) nanofibers by applying a mixed solution of polyvinylpyrrolidone (PVP) and various concentrations of cerium nitrate hydrate ($Ce(NO_3)_3$) ranging from 15.0 to 26.0 wt % by the electrospinning process. Ceria nanofibers were obtained after calcining PVP/$Ce(NO_3)_3$ nanofiber composites at 873 and 1173 K. The SEM images indicated that the diameters of $CeO_2$ nanofibers calcined at 873 and 1173 K were smaller than those of nanofibers obtained at RT. As the amount of cerium increased, the diameter of $CeO_2$ nanofibers increased. XRD analysis revealed that the ceria nanofibers were in cubic form. TEM results revealed that the ceria nanofibers were formed by the interconnection of Ce oxide nanoparticles. The ceria nanofibers obtained at low concentrations of Ce (CeL) showed spotty ring patterns indicated that the ceria nanofibers were polycrystalline structure. And the ceria nanofibers obtained at high concentration of Ce (CeH) showed fcc (001) diffraction pattern. XPS study indicated that the oxidation of Ce shifted from $Ce^{3+}$ to $Ce^{4+}$ as the calcination temperature increased.

Chalcones as Novel Non-peptidic μ-Calpain Inhibitors

  • Lee, Eun-Young;Jang, In-Hye;Shin, Min-Jung;Cho, Hee-Ju;Kim, Jung-Sook;Eom, Ji-Eun;Kwon, Young-Joo;Na, Young-Hwa
    • Bulletin of the Korean Chemical Society
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    • v.32 no.9
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    • pp.3459-3464
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    • 2011
  • In order to extend the scaffold of non-peptidic calpain inhibitor, we have designed and synthesized 14 chalcone derivatives categorized into two groups based on their structures. Compounds 7 ($IC_{50}=16.67{\pm}0.42{\mu}M$) and 8 ($IC_{50}=16.92{\pm}0.14{\mu}M$) in group A were most selective ${\mu}$-calpain inhibitor over cathepsins B and L. On the other hand, compound 14 possessing furan ring exhibited inhibitory activities for ${\mu}$-calpain ($IC_{50}=15.39{\pm}1.34{\mu}M$) as well as cathepsin B ($IC_{50}=20.59{\pm}1.35{\mu}M$). The results discovered implicated that chalcone analogues possessing proper size and functional groups can be a potential lead core for selective non-peptidic ${\mu}$-calpain inhibitor. Furthermore, dual inhibitors for ${\mu}$-calpain and cathepsin B can also be developed from chalcones by elaborate structure manipulation.