• Title/Summary/Keyword: reverse design

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Plant Virome Analysis by the Deep Sequencing of Small RNAs of Fritillaria thunbergii var. chekiangensis and the Rapid Identification of Viruses

  • Chen, Lu-xi;Pan, Hang-kai;Tao, Yu-tian;Yang, Dang;Deng, Hui-min;Xu, Kai-jie;Chen, Wen-bin;Li, Jun-min
    • The Plant Pathology Journal
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    • v.38 no.5
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    • pp.533-540
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    • 2022
  • Thunberg fritillary (Fritillaria thunbergii), a perennial used in traditional Chinese herbal medicine, is a members of the family Liliaceae. The degeneration of germplasm is a severe problem in the production of Fritillaria thunbergii var. chekiangensis. However, no information about viral infections of F. thunbergii var. chekiangensis has been reported. In this study, we sequenced the small RNAs of F. thunbergii var. chekiangensis from leaves and bulbs, and viruses were identified using a phylogenetic analysis and BLAST search for sequence. In addition, multiplex reverse transcriptase-polymerase chain reaction (RT-PCR) was used to rapidly detect viruses in this variety. Our study first reported that five viruses infected F. thunbergii var. chekiangensis. Among them, fritillary virus Y (FVY), lily mottle virus (LMoV), Thunberg fritillary mosaic virus (TFMV), and hop yellow virus (HYV) had been reported in F. thunbergii, while apple stem grooving virus was first reported in the genus Fritillaria. A multiplex RT-PCR method was developed to rapidly test the four viruses FVY, LMoV, TFMV, and HYV in F. thunbergii var. chekiangensis. Our results provide a better understanding of the infection of F. thunbergii var. chekiangensis by viruses and a basic reference for the better design of suitable control measures.

Development of a nucleic acid detection method based on the CRISPR-Cas13 for point-of-care testing of bovine viral diarrhea virus-1b

  • Sungeun Hwang;Wonhee Lee;Yoonseok Lee
    • Journal of Animal Science and Technology
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    • v.66 no.4
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    • pp.781-791
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    • 2024
  • Bovine viral diarrhea (BVD) is a single-stranded, positive-sense ribonucleic acid (RNA) virus belonging to the genus Pestivirus of the Flaviviridae family. BVD frequently causes economic losses to farmers. Among bovine viral diarrhea virus (BVDV) strains, BVDV-1b is predominant and widespread in Hanwoo calves. Reverse-transcription polymerase chain reaction (RT-PCR) is an essential method for diagnosing BVDV-1b and has become the gold standard for diagnosis in the Republic of Korea. However, this diagnostic method is time-consuming and requires expensive equipment. Therefore, Clustered regularly interspaced short palindromic repeats-Cas (CRISPR-Cas) systems have been used for point-of-care (POC) testing of viruses. Developing a sensitive and specific method for POC testing of BVDV-1b would be advantageous for controlling the spread of infection. Thus, this study aimed to develop a novel nucleic acid detection method using the CRISPR-Cas13 system for POC testing of BVDV-1b. The sequence of the BVD virus was extracted from National Center for Biotechnology Information (NC_001461.1), and the 5' untranslated region, commonly used for detection, was selected. CRISPR RNA (crRNA) was designed using the Cas13 design program and optimized for the expression and purification of the LwCas13a protein. Madin Darby bovine kidney (MDBK) cells were infected with BVDV-1b, incubated, and the viral RNA was extracted. To enable POC viral detection, the compatibility of the CRISPR-Cas13 system was verified with a paper-based strip through collateral cleavage activity. Finally, a colorimetric assay was used to evaluate the detection of BVDV-1b by combining the previously obtained crRNA and Cas13a protein on a paper strip. In conclusion, the CRISPR-Cas13 system is highly sensitive, specific, and capable of nucleic acid detection, making it an optimal system for the early point-of-care testing of BVDV-1b.

A Study on the 3D Measurement Data Application: The Detailed Restoration Modeling of Mireuksajiseoktap (미륵사지석탑 정밀복원모형 제작을 중심으로 한 3차원 실측데이터의 활용 연구)

  • Moon, Seang Hyen
    • Korean Journal of Heritage: History & Science
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    • v.44 no.2
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    • pp.76-95
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    • 2011
  • After dismantled, Mireuksajiseoktap(Stone pagoda of Mireuksa Templesite) is being in the stage of restoration design. Now, different ways - producing restoration model, a 3 dimension simulation - have been requested to make more detailed and clearer restoration design prior to confirmation of its restoration design and actual restoration carry-out. This thesis proposes the way to build the detailed model for better restoration plan using extensively-used Reverse Engineering technique and Rapid Prototyping. It also introduces each stage such as a 3-dimension actual measurement, building database, a 3-dimension simulation etc., to build a desirable model. On the top of that, this thesis reveals that after dismantled, MIruksaji stone pagoda's interior and exterior were not constructed into pieces but wholeness, so that its looks can be grasped in more virtually and clearly. Secondly, this thesis makes a 3-dimension study on the 2-dimension design possible by acquiring basic materials about a 3-dimension design. Thirdly, the individual feature of each member like the change of member location can be comprehended, considering comparing analysis and joint condition of member. Lastly, in the structural perspective this thesis can be used as reference materials for structure reinforcement design by grasping destructed aspects of stone pagoda and weak points of the structure. In dismantlement-repair and restoration work of cultural properties that require delicate attention and exactness, there may be evitable errors on time and space in building reinforcement and restoration design based on a 2-dimension plan. Especially, the more complicate and bigger the subject is, the more difficult an analysis about the status quo and its delicate design are. A series of pre-review, based on the 3-dimension data according to actual measurement, can be one of the effective way to minimize the possibility that errors about time - space happen by building more delicate plan and resolving difficulties.

Stress dissipation characteristics of four implant thread designs evaluated by 3D finite element modeling (4종 임플란트 나사산 디자인의 응력분산 특성에 대한 3차원 유한요소해석 연구)

  • Nam, Ok-Hyun;Yu, Won-Jae;Kyung, Hee-Moon
    • The Journal of Korean Academy of Prosthodontics
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    • v.53 no.2
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    • pp.120-127
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    • 2015
  • Purpose: The aim was to investigate the effect of implant thread designs on the stress dissipation of the implant. Materials and methods: The threads evaluated in this study included the V-shaped, buttress, reverse buttress, and square-shaped threads, which were of the same size (depth). Building four different implant/bone complexes each consisting of an implant with one of the 4 different threads on its cylindrical body ($4.1mm{\times}10mm$), a force of 100 N was applied onto the top of implant abutment at $30^{\circ}$ with the implant axis. In order to simulate different osseointegration stages at the implant/bone interfaces, a nonlinear contact condition was used to simulate immature osseointegration and a bonding condition for mature osseointegration states. Results: Stress distribution pattern around the implant differed depending on the osseointegration states. Stress levels as well as the differences in the stress between the analysis models (with different threads) were higher in the case of the immature osseointegration state. Both the stress levels and the differences between analysis models became lower at the completely osseointegrated state. Stress dissipation characteristics of the V-shape thread was in the middle of the four threads in both the immature and mature states of osseointegration. These results indicated that implant thread design may have biomechanical impact on the implant bed bone until the osseointegration process has been finished. Conclusion: The stress dissipation characteristics of V-shape thread was in the middle of the four threads in both the immature and mature states of osseointegration.

A Study on Transcranial Magnetic Electrode Simulation Using Maxwell 3D (Maxwell 3D를 이용한 경두개 자기 전극 시뮬레이션에 관한 연구)

  • Lee, Geun-Yong;Yoon, Se-Jin;Jeong, Jin-hyoung;Kim, Jun-Tae;Lee, Sang-sik
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
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    • v.12 no.6
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    • pp.657-665
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    • 2019
  • In this study, we conducted a study on the transcranial magnetic electrode, a method for the study of dementia and muscle pain, a neurodegenerative disease caused by an aging society, which is becoming a problem worldwide. In particular, transcranial magnetic electrodes have been studied to improve their ability to be deteriorated by dementia symptoms such as speech, cognitive ability, and memory by outputting magnetism deep into the brain using coils on the head epidermis. In this study, simulation was performed using Maxwell 3D program for the design of coil, the core of transcranial magnetic electrode. As a result of the simulation comparison between the coil designed by the previous research and the coil through the research and development, the output was found to be superior to the conventional designed coil. The graphs of the coil outputs of B-Field and H-Field are found to be symmetrical, but the symmetry between each coil is pseudo-symmetrical and not accurate. Based on these results, an experiment was conducted to confirm whether the output of the head epidermis through both coils is possible. In the magnitude field of the reverse-coil 2-coil analysis, the maximum output was 3.3920e + 004 H [A_per_meter], and the vector field showed the strongest magnetic field around 35 to 165 degrees. It was confirmed that the magnetic output canceled due to the magnetic output. In the case of the forward 2-coil, a maximum of 3.2348e + 004H [A_per_meter] similar to the reverse coil was observed, but in the case of the vector field, the magnetic output regarding the forward output and the head skin output was confirmed. However, when the height change in the output coil, the magnetic output was reduced.

A Study on the Application of Ion Crystallization Technology to the APR 1400 Liquid Waste Management System (핵종 이온 광물화 처리기술의 APR 1400 발전소 액체방사성폐기물관리계통 적용 위치에 대한 고찰)

  • Go, Kyung-Min;Kim, Chang-Lak
    • Journal of Nuclear Fuel Cycle and Waste Technology(JNFCWT)
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    • v.17 no.4
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    • pp.419-427
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    • 2019
  • The application of ion crystallization technology was considered as a way to increase the operating efficiency and improve the operating performance of a liquid waste management system (LWMS) in the Advanced Power Reactor 1400 (APR 1400). Although ion crystallization technology has not been practically applied to Nuclear Power Plants (NPPs) until now, a previous experimental study demonstrated that it is possible to selectively remove at least 95% of various nuclide ions present in the liquid radioactive waste of NPPs. We reviewed the possibility of applying ion crystallization technology to the existing LWMS by applying the nuclide removal rate of ion crystallization technology and prepared a way to improve the existing LWMS in the APR 1400. Furthermore, we determined the optimized application location of ion crystallization technology in the existing LWMS by considering decontamination characteristics of the ion crystallization technology and the existing LWMS design features and operating experiences. The application of ion crystallization technology to the liquid waste collection tank, where liquid radioactive materials are collected, will have the least impact on the existing design while providing the greatest improvement. It is expected that the application of ion crystallization technology to the current APR 1400 or new NPPs would increase the operating efficiency of the LWMS and result in an improvement of system performance.

Practical modeling of cigarette ventilation rate

  • Kim, Young-Hoh;Lee, Moon-Yong;Rhee, Kyu-Seo;Lee, Dong-Wook
    • Journal of the Korean Society of Tobacco Science
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    • v.21 no.2
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    • pp.109-118
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    • 1999
  • A model predicted describing the effect of cigarette making materials on the level of filter ventilation was developed and evaluated. The developed model was expressed in terms of a linear and quadratic relationship which was validated with experimental measurements for different porosity of plug wrap and tipping paper, unencapsulated pressure drop of filter plug and cigarette column and vent position. Forty-six experimental frequencies were determined as a result of using three levels with five factors Box-Behnken design and analyzed by the multiple regression analysis with backward stepwise in STATISTICA/PC under restricted conditions. The four factors, except filter pressure drop variable, were statistically significant at the level of 0.05 but most of all linear by linear interactions were comparatively lower significant. By the analysis of linear and quadratic regression coefficient, filter ventilation of the cigarette was affected by porosity of plugwrap (5.87, -4.25), porosity of tip paper (5.68, -1.00), vent position (-3.87, 3.08), tobacco column pressure drop (2.56, 0.66), and filter pressure drop (1.50, 0.58) in the decreasing order. It should be emphasized that the major conclusion of this study was not that any particular parameter was linear or quadratic on any limit scale, but that there were highly significant relationships among factors involving linear, quadratic and their interaction and perhaps even linearity between and within factors. While, there is also quite strong evidence that vent position from mouth end and cigarette making materials are reverse relationship on this experimental model. On the basis of the result, it can be concluded that the porosity of the plug wrap and tipping paper has a marked effect on degree of filter ventilation rate. The F-value of plug wrap and tipping paper porosity among five factors were 39.2 and 36.8 respectively with P-value of 0.000 indicating higher significant for both factors. According to the analysis of variance, the model fitted for filter ventilation was significant at 5% confidence level and the coefficient of determination ($R^2$=0.84) was the proportion to variability in the data well fitted for by the model.

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A Development of Traffic Accident Estimation Model by Random Parameter Negative Binomial Model: Focus on Multilane Rural Highway (확률모수를 이용한 교통사고예측모형 개발: 지방부 다차로 도로를 중심으로)

  • Lim, Joon Beom;Lee, Soo Beom;Kim, Joon-Ki;Kim, Jeong Hyun
    • Journal of Korean Society of Transportation
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    • v.32 no.6
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    • pp.662-674
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    • 2014
  • In this study, accident frequency prediction models were constructed by collecting variables such as geometric structures, safety facilities, traffic volume and weather conditions, land use, highway design-satisfaction criteria along 780km (4,372 sections) of 4 lane-highways over 8 areas. As for models, a fixed parameter model and a random parameter model were employed. In the random parameter model, some influences were reversed as the range was expressed based on specific probability in the case of no fixed coefficients. In the fixed parameter model, the influences of independent variables on accident frequency were interpreted by using one coefficient, but in the random parameter model, more various interpretations were took place. In particular, curve radius, securement of shoulder lane, vertical grade design criteria satisfaction showed both positive and negative influence, according to specific probability. This means that there could be a reverse effect depending on the behavioral characteristics of drivers and the characteristics of highway sections. Rather, they influence the increase of accident frequency through the all sections.

A 3-D finite element analysis on the mandibular movement pattern and stress distribution during symphyseal widening (하악 이부확장 시 하악골 이동 양상과 응력 분포에 관한 삼차원 유한요소법적 연구)

  • Lee, Do-Hoon;Hong, Hyun-Sil;Chae, Jong-Moon;Jo, Jin-Hyung;Kim, Sang-Cheol
    • The korean journal of orthodontics
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    • v.38 no.1
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    • pp.13-30
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    • 2008
  • Objective: The objective of this study was to evaluate the displacement pattern and the stress distribution of the finite element model 3-D visualization during symphyseal widening according to the osteotomy position, osteotomy type, and distraction device. Methods: The kinds of distraction devices used were tooth-borne type, hybrid type, bone-borne type and tooth-borne type $30^{\circ}$ angulated, and the kinds of osteotomy design were vertical osteotomy line between the central incisors and step osteotomy line through the symphysis. Results: All reference points of the mandible including the condyles were displaced laterally irrespective of the osteotomy position, osteotomy method and distraction device. The anteroposterior or vertical displacements showed small differences between the groups. The widening pattern of the osteotomy line in the tooth-borne type of device was v shaped, and that of bone-borne type was a reverse v shape. However, the pattern in the hybrid type was parallel. The lateral displacement of the mandibular angle by the bone-borne device was more remarkable than the other types of devices. The displacement by the $30^{\circ}$ angulated tooth-borne type was different between the left and right sides in both the transverse and anteroposterior aspects. Conclusion: The design of the distraction devices and osteotomy line can influence the displacement pattern and the stress distribution during mandibular symphyseal distraction osteogenesis procedures.

A Design and Implementation for a Reliable Data Storage in a Digital Tachograph (디지털 자동차운행기록계에서 안정적인 데이터 저장을 위한 설계 및 구현)

  • Baek, Sung Hoon;Son, Myunghee
    • KIPS Transactions on Computer and Communication Systems
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    • v.1 no.2
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    • pp.71-78
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    • 2012
  • The digital tachograph is a device that automatically records speed and distance of a vehicle, together with the driver's activity and vehicle status at an accident. It records vehicle speed, break status, acceleration, engine RPM, longitude and latitude of GPS, accumulated distance, and so on. European Commission regulation made digital tachographs mandatory for all trucks from 2005. Republic of Korea made digital tachographs mandatory for all new business vehicles from 2011 and is widening the range of vehicles that must install digital tachographs year by year. This device is used to analyze driver's daily driving information and car accidents. Under a car accident that makes the device reliability unpredictable, it is very important to store driving information with maximum reliability for its original mission. We designed and implemented a practical digital tachograph. This paper presents a storage scheme that consists of a first storage device with small capacity at a high reliability and a second storage device with large capacity at a low cost in order to reliably records data with a hardware at a low cost. The first storage device records data in a SLC NAND flash memory in a log-structured style. We present a reverse partial scan that overcomes the slow scan time of log-structured storages at the boot stage. The scheme reduced the scan time of the first storage device by 1/50. In addition, our design includes a scheme that fast stores data at a moment of accident by 1/20 of data transfer time of a normal method.