Molecular Characterization of Chicken Toll-like Receptor 7
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- Reproductive and Developmental Biology
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- v.39 no.4
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- pp.105-115
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- 2015
Toll-like receptor 7 (TLR7) is critical for the triggering of innate immune response by recognizing the conserved molecular patterns of single-stranded RNA (ssRNA) viruses and mediated antigenic adaptive immunity. To understand how TLR7 distinguish pathogen-derived molecular patterns from the host self, it is essential to be able to identify TLR7 receptor interaction interfaces, such as active sites or R848-agonist binding sites. The functional interfaces of TLR7 can serve as targets for structure-based drug design in studying the TLR7 receptor's structure-function relationship. In contrast to mammalian TLR7, chicken TLR7 (chTLR7) is unknown for its important biological function. Therefore, it has been targeted to mediate contrasting evolutionary patterns of positive selection into non-synonymous SNPs across eleven species using TLR7 conservation patterns (evolutionary conserved and class-specific trace residues), where protein sequence differences to the TLR7 receptors of interest record mutation that have passed positive section across the species. In this study, we characterized the Lys609 residue on chTLR7-ECD homodimer interfaces to reflect the current tendency of evolving positive selection to be transfer into a stabilization direction of the R848-agonist/chTLR7-ECDs complex under the phylogenetically variable position across species and we suggest a potential indicator for contrasting evolutionary patterns of both the species TLR-ECDs.
In recent years the interest in online monitoring of lightweight structures with ultrasonic guided waves is steadily growing. Especially the aircraft industry is a driving force in the development of structural health monitoring (SHM) systems. In order to optimally design SHM systems powerful and efficient numerical simulation tools to predict the behaviour of ultrasonic elastic waves in thin-walled structures are required. It has been shown that in real industrial applications, such as airplane wings or fuselages, conventional linear and quadratic pure displacement finite elements commonly used to model ultrasonic elastic waves quickly reach their limits. The required mesh density, to obtain good quality solutions, results in enormous computational costs when solving the wave propagation problem in the time domain. To resolve this problem different possibilities are available. Analytical methods and higher order finite element method approaches (HO-FEM), like p-FEM, spectral elements, spectral analysis and isogeometric analysis, are among them. Although analytical approaches offer fast and accurate results, they are limited to rather simple geometries. On the other hand, the application of higher order finite element schemes is a computationally demanding task. The drawbacks of both methods can be circumvented if regions of complex geometry are modelled using a HO-FEM approach while the response of the remaining structure is computed utilizing an analytical approach. The objective of the paper is to present an efficient method to couple different HO-FEM schemes with an analytical description of an undisturbed region. Using this hybrid formulation the numerical effort can be drastically reduced. The functionality of the proposed scheme is demonstrated by studying the propagation of ultrasonic guided waves in plates, excited by a piezoelectric patch actuator. The actuator is modelled utilizing higher order coupled field finite elements, whereas the homogenous, isotropic plate is described analytically. The results of this "semi-analytical" approach highlight the opportunities to reduce the numerical effort if closed-form solutions are partially available.
This paper presents a modified on-off algorithm based on the gradient method for providing the phase of each antenna element more accurately and simply compared to the conventional on-off algorithm. The sup4erisority of theproposed method is due to the fact that the proposed method finds the increase and decrease of the array output power more accurately by utilizing the gradient of array output power with respect to the instantaneous phase of array element. The array antenna adopting to the proposed method formsmaximum beam-pattern along the direction of the desired signal by aligning the phase of every antenna enement. The proposed method is applied to both linear and two-dimentional aray for analyzing the result. The capability of the real-time processing of the proposed technique is confirmed by implementing the proposed algorithm with TMS320C30 Evaluation Module. Since the computational load required to form the beam-pattern per snapshot is small, the proposed method is suitable for the mobile communication system of which the response must be fast. By the results obtained from the application of the proposed method to the CDMA mobile communication environment, it is vreified that the performance of the received signal is consideralbly improved.
The structural analysis module is an essential part of any integrated structural system. Diverse integrated systems today require, from the analysis module, efficient real-time responses to real-time input such as earthquake signals, extreme weather-related forces, and man-made accidents. An integrated system may also be for the entire life span of a civil structure conceived during the initial conception, developed throughout various design stages, effectively used in construction, and utilized during usage and maintenance. All these integrated systems' essential part is the structural analysis module, which must be automated and computationally efficient so that responses may be almost immediate. The finite element method is often used for structural analysis, and for automation, many effective finite element meshes must be automatically generated for a given analysis. A computationally efficient finite element mesh generation scheme based on the r-h method of mesh refinement using strain deviations from the values at the Gauss points as error estimates from the previous mesh is described. Shape factors are used to sort out overly distorted elements. A standard cantilever beam analyzed by four-node plane stress elements is used as an example to show the effectiveness of the automated algorithm for a time-domain dynamic analysis. Although recent developments in computer hardware and software have made many new applications in integrated structural systems possible, structural analysis still needs to be executed efficiently in real-time. The algorithm applies to diverse integrated systems, including nonlinear analyses and general dynamic problems in earthquake engineering.
One of the most reliable and simplest tools for structural vibration control in civil engineering is Tuned Mass Damper, TMD. Provided that the frequency and damping parameters of these dampers are tuned appropriately, they can reduce the vibrations of the structure through their generated inertia forces, as they vibrate continuously. To achieve the optimal parameters of TMD, many different methods have been provided so far. In old approaches, some formulas have been offered based on simplifying models and their applied loadings while novel procedures need to model structures completely in order to obtain TMD parameters. In this paper, with regard to the nonlinear decision-making of fuzzy systems and their enough ability to cope with different unreliability, a method is proposed. Furthermore, by taking advantage of both old and new methods a fuzzy system is designed to be operational and reduce uncertainties related to models and applied loads. To design fuzzy system, it is required to gain data on structures and optimum parameters of TMDs corresponding to these structures. This information is obtained through modeling MDOF systems with various numbers of stories subjected to far and near field earthquakes. The design of the fuzzy systems is performed by three methods: look-up table, the data space grid-partitioning, and clustering. After that, rule weights of Mamdani fuzzy system using the look-up table are optimized through genetic algorithm and rule weights of Sugeno fuzzy system designed based on grid-partitioning methods and clustering data are optimized through ANFIS (Adaptive Neuro-Fuzzy Inference System). By comparing these methods, it is observed that the fuzzy system technique based on data clustering has an efficient function to predict the optimal parameters of TMDs. In this method, average of errors in estimating frequency and damping ratio is close to zero. Also, standard deviation of frequency errors and damping ratio errors decrease by 78% and 4.1% respectively in comparison with the look-up table method. While, this reductions compared to the grid partitioning method are 2.2% and 1.8% respectively. In this research, TMD parameters are estimated for a 15-degree of freedom structure based on designed fuzzy system and are compared to parameters obtained from the genetic algorithm and empirical relations. The progress up to 1.9% and 2% under far-field earthquakes and 0.4% and 2.2% under near-field earthquakes is obtained in decreasing respectively roof maximum displacement and its RMS ratio through fuzzy system method compared to those obtained by empirical relations.
The wall shear stress in the vicinity of end-to end anastomoses under steady flow conditions was measured using a flush-mounted hot-film anemometer(FMHFA) probe. The experimental measurements were in good agreement with numerical results except in flow with low Reynolds numbers. The wall shear stress increased proximal to the anastomosis in flow from the Penrose tubing (simulating an artery) to the PTFE: graft. In flow from the PTFE graft to the Penrose tubing, low wall shear stress was observed distal to the anastomosis. Abnormal distributions of wall shear stress in the vicinity of the anastomosis, resulting from the compliance mismatch between the graft and the host artery, might be an important factor of ANFH formation and the graft failure. The present study suggests a correlation between regions of the low wall shear stress and the development of anastomotic neointimal fibrous hyperplasia(ANPH) in end-to-end anastomoses. 30523 T00401030523 ^x Air pressure decay(APD) rate and ultrafiltration rate(UFR) tests were performed on new and saline rinsed dialyzers as well as those roused in patients several times. C-DAK 4000 (Cordis Dow) and CF IS-11 (Baxter Travenol) reused dialyzers obtained from the dialysis clinic were used in the present study. The new dialyzers exhibited a relatively flat APD, whereas saline rinsed and reused dialyzers showed considerable amount of decay. C-DAH dialyzers had a larger APD(11.70
The wall shear stress in the vicinity of end-to end anastomoses under steady flow conditions was measured using a flush-mounted hot-film anemometer(FMHFA) probe. The experimental measurements were in good agreement with numerical results except in flow with low Reynolds numbers. The wall shear stress increased proximal to the anastomosis in flow from the Penrose tubing (simulating an artery) to the PTFE: graft. In flow from the PTFE graft to the Penrose tubing, low wall shear stress was observed distal to the anastomosis. Abnormal distributions of wall shear stress in the vicinity of the anastomosis, resulting from the compliance mismatch between the graft and the host artery, might be an important factor of ANFH formation and the graft failure. The present study suggests a correlation between regions of the low wall shear stress and the development of anastomotic neointimal fibrous hyperplasia(ANPH) in end-to-end anastomoses. 30523 T00401030523 ^x Air pressure decay(APD) rate and ultrafiltration rate(UFR) tests were performed on new and saline rinsed dialyzers as well as those roused in patients several times. C-DAK 4000 (Cordis Dow) and CF IS-11 (Baxter Travenol) reused dialyzers obtained from the dialysis clinic were used in the present study. The new dialyzers exhibited a relatively flat APD, whereas saline rinsed and reused dialyzers showed considerable amount of decay. C-DAH dialyzers had a larger APD(11.70