• 제목/요약/키워드: recombinant inbred lines

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Investigation of Defense and Vegetative Growth Related Traits of Recombinant Inbred Lines of Brassica rapa

  • Kwon, Soon-Tae;Yeam, Inhwa;Shin, Jong Hwa
    • 한국자원식물학회지
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    • 제33권6호
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    • pp.615-623
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    • 2020
  • Brassica rapa is one of the most valuable vegetable crops worldwide. Cultivated varieties of B. rapa exhibit diverse developmental and morphological appearances, which includes important vegetables, oilseeds, and fodder crops. In this study, various phenotypes of recombinant inbred lines (RILs) of B. rapa were investigated, including their responses to five different pathogenic Botrytis cinerea isolates, responses to aphid and thrips during flowering stages, days to flowering, and plant heights. Responses of 113 RILs to five different B. cinerea isolates showed variations, suggesting that genetic factors controlling resistance or tolerance against each isolate were dependent on isolate/genotype pairs. Correlation analysis was performed to understand the nature of genetic factors and the relationship among these phenotypes. Although high levels of correlation were not detected between phenotypes assessed in this study, statistically significant correlation was detected for several combinations. Significant positive correlations were found for different B. cinerea isolates, supporting that certain levels of commonality could exist in genetic components controlling resistance against different B. cinerea isolates. Based on correlation analysis using numbers of insects counted on plants, it was speculated that genetic factors responsible for aphid tolerance or repellence might be also involved in the response against thrips. Relationship between vegetative growth and tolerance against B. cinereal or insects is rather more complicated. However, it was observed that shorter plants appeared to have a certain level of tolerance or repellence against both aphids and thrips. Data presented in this study could be used to assist further genetic studies and breeding efforts to obtain Botritis and insect resistance for B. rapa.

Agronomic Characteristics of Rice Recombinant Inbred Lines (RILs) Developed from a Cross of Nonganbyeo and BG 279

  • Lee, Jeom-Ho;Kim, Nam-Soo;Cho, Youn-Sang;Song, Moon-Tae;Hwang, Hung-Goo;Moon, Huhn-Pal
    • 한국작물학회지
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    • 제44권1호
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    • pp.86-94
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    • 1999
  • A set of rice recombinant inbred lines was developed from a cross between a Tongil type variety, Nonganbyeo, and an indica variety, BG276, by the single seed descent method. The number of the lines in the population was 272. All the agronomic characters studied except ADV (alkali-digestion value) showed continuous variation among the RILs, implying that their inheritance mode should be quantitative. The patterns of the variation in the RILs were either normal or skewed distribution. ADVs of RILs were segregated into two groups with 1:1 ratio, indicating that ADVs in this KIL population might be controlled by one major gene. Transgressive variations were also observed in all characters. Heritability values of the characters varied from 0.488 in brown/rough rice ratio to 0.895 in alkali-digestion value. In the analysis of genotypic and phenotypic correlations, the character of yield was positively correlated with 8 different agronomic characters. The number of panicles per hill was negatively correlated with culm length, panicle length, and number of spikelets per panicle. Grain length was positively correlated with grain width, grain thickness, grain length/width ratio, white belly, ADV, and amylose. However, grain length/width ratio was negatively correlated with grain width. White core was also negatively correlated with white belly and ADV.

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대두 재조합순계주에서 고빈도 체세포배발생능 계통 조사 (Screening of Soybean Recombinant Inbred Lines for High Competence Somatic Embryogenesis)

  • 최필선;다가오 고마쓰다;김민훈;최규명;최동욱;유장렬
    • Journal of Plant Biotechnology
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    • 제29권2호
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    • pp.135-138
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    • 2002
  • 대두 85개 재조합순계주의 미숙배로부터 얻은 자엽절편을 MS salt, B5비타민, 40 mg$^{-1}$ 2,4-dichlorophenoxyacetic acid (2,4-D) 및 30 g$^{-1}$ sucrose로 조성된 체세포배유도배지 (SIM, somatic induce medium)에 치상하여 5주간 배양하였다. 10%이하의 체세포배형성빈도는 36계통에서, 11~49%의 형성빈도는 37계통에서, 50~80%의 형성빈도는 9계통에서 그리고 90% 이상의 형성빈도는 3계통에서 각각 관찰되었다. 90% 이상의 체세포배형성빈도와 자엽당 6.36개의 체세포배를 형성하는 계통으로는 KM1010, KM1032 및 KM1064이었으며, 3계통에서 얻은 일차배를 동일배지상에서 계대배양하면서 2차배 증식방법으로 1년 이상 증식 유지하였다. 체세포배를 성숙배지와 식물체전환배지 (Komatsuda 1992)에 옮겼을 때 약 25% 정도가 정상식물체로 생육하였다.

벼 재조합자식계통의 초기급속등숙 속도에 따른 아밀로그램 특성변이 (Characteristics Variation of Amylogram Properties by the Rapidity of Grain Filling in Rice Recombinant Inbred Line's Populations)

  • 곽태순
    • 한국육종학회지
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    • 제40권3호
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    • pp.291-294
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    • 2008
  • 밀양 23호와 기호벼의 재조합 자식 164계통에 대하여 Rapid Visco Analyzer(RVA)방법으로 분석한 아밀로그램특성을 출수 후 15일째의 이삭무게를 출수 후 40일째의 이삭무게 비율로 계산한 초기급속등숙속도(rapidity of grain filling:RGF)품종군별로 호화온도, 최고점도, 최저점도, 최종점도, 강하점도, 응집점도 및 취반점도를 해석하였고 품종군별 아밀로그램특성간 상관관계를 분석하였다. 사용한 164 M/G RILs를 RGF에 따라서 완만등숙형(40%이하의 RGF), 준완만등숙형(41- 60% RGF), 준급속등숙형(61-80%RGF), 그리고 급속등숙형(81%이상 RGF)으로 구분되었으며 최고점도, 최저점도 및 취반점도는 RGF품종군별 일정한 경향을 보였다. 초기급속등숙속도를 기준으로 분류한 모든 품종군에서 강하점도와 취반점도는 고도의 부의 상관을 보였고 응집점도와 취반점도는 고도의 정의 상관을 보였다.

Identification of QTLs Affecting Physical Traits of Cooked Rice

  • Kang, Hyeon-Jung;Cho, Yong-Gu;Lee, Young-Tae;Kim, Young-Doo;Eun, Moo-Young;Shim, Jae-Uk
    • 한국작물학회지
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    • 제44권1호
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    • pp.70-73
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    • 1999
  • This study was conducted to ascertain the chromosomal locations and effect of quantitative trait loci (QTL) associated with the physical traits of rice (Oryza sativa L.) eating quality. One hundred sixty four recombinant inbred lines (MGRILs) of F$_{11}$ were derived from the cross between Milyang 23 (Tongil type) and Gihobyeo (japonica type). They were evaluated for six physical traits of cooked rice. Transgressive segregation was observed for all examined traits. Significant QTL were detected (LOD$\geq$2.0) in three traits, including single QTL for adhesiveness, gumminess, and chewiness of cooked rice, respectively. Phenotypic variation explained by each QTL ranged from 6.3% to 14.6%. However, no significant QTL was detected for hardness, cohesiveness, and elasticity of cooked rice. Pleiotropic effects of single QTL on different traits are observed.d.

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QTL Mapping of Genes Related with Grain Chemical Properties Based on Molecular Map of Rice

  • Kang, Hyeon-Jung;Cho, Yong-Gu;Lee, Young-Tae;Kim, Young-Doo;Eun, Moo-Young;Shim, Jae-Uk
    • 한국작물학회지
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    • 제43권4호
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    • pp.199-204
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    • 1998
  • This study was conducted to investigate the chromosomal locations and effects of quantitative trait loci (QTL) associated with chemical properties of rice (Oryza sativa L.). One hundred sixty four recombinant inbred lines (MGRILs) of $F_{11}$ were derived from the cross between Milyang 23, Tongil type, and Gihobyeo, japonica type. They were evaluated for 7 traits of chemical property in rice. Transgressive segregation was observed for all traits examined. Eight significant QTLs were detected (LOD$\geq$2.0) for five traits, including two QTLs for amylose content, two QTLs for potassium content, one QTL for ratio of magnesium to potassium, one QTL for fat content and two QTLs for ash content. Phenotypic variation explained by each QTL ranged from 7.2% to 14.4%. However, no significant QTL was detected for magnesium and protein contents. In amylose content and ash content M alleles originated from Milyang 23 were responsible for increasing these traits and J alleles originated from Gihobyeo also responsible for increasing these traits. Pleiotropic effects of single QTLs on different traits are observed.

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Field Evaluation of Mungbean Recombinant Inbred Lines against Mungbean Yellow Mosaic Disease Using New Disease Scale in Thailand

  • Akhtar, Khalid P.;Kitsanachandee, R.;Srinives, P.;Abbas, G.;Asghar, M.J.;Shah, T.M.;Atta, B.M.;Chatchawankanphanich, O.;Sarwar, G.;Ahmad, M.;Sarwar, N.
    • The Plant Pathology Journal
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    • 제25권4호
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    • pp.422-428
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    • 2009
  • Studies were conducted to identify the sources of resistance in mungbean recombinant inbred lines (RILs) in Thailand against mungbean yellow mosaic disease (MYMD). 146 mungbean RILs in $F_8$ series were evaluated in a field including resistant parent NM-10-12-1 and susceptible parent KPS 2 during summer 2008 under high inoculum pressure. The RILs were subsequently scored for disease symptom severity ratings (DSSR) using a new scale. Observations regarding DSSR and % disease index (%DI) showed that the tested RILs responded differently to the disease. A large number of RILs (132) were found highly susceptible, 12 were susceptible, 3 were tolerant and one was resistant. Overall screening results showed that three RILs, viz. line no. 30, 100 and 101 had minimum DSSR and % disease index thus they are good source of resistance to MYMD in spite of high disease pressure and can therefore be used directly as varieties to manage the disease in Thailand.

Mapping of Quantitative Trait Loci Associated with Viviparous Germination in Rice

  • Lee, Seung-Yeob;Ahn, Jeong-Ho;Cha, Young-Soon;Yun, Doh-Won;Lee, Myung-Cheol;Eun, Moo-Young
    • 한국작물학회지
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    • 제51권6호
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    • pp.565-570
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    • 2006
  • The viviparous germination (VG) with lodging caused the yield reduction and quality deterioration in rice. We carried out the evaluation of VG tolerance (on the 40th day after heading) and mapping QTLs associated with VG tolerance using the recombinant inbred lines (M/G RILs) from a cross between Milyang 23 (japonica/indica) and Gihobyeo (japonica). The VG rates of Milyang 23 and Gihobyeo were 0.0 and 7.0%, respectively. The averaged VG rate of 162 M/G RILs was 7.7%, and their range was from 0.0 to 50.9%. Of the 162 RILs, 144 lines were tolerant less than 10%, and 18 lines were susceptible more than 10%. Using the M/G RIL Map, three QTLs associated with the viviparous trait were detected on chromosome 2 (qVG 2-1 and qVG 2-2) and 8 (qVG 8). qVG 2-1 was linked to RM 32D and RZ 166, and had LOD score of 2.97. qVG 2-2 was tightly linked to E13M59.119-Pl and E13M59.M003-P2, and showed higher LOD score of 3.41. qVG 8 was linked to RM33 and TCT116, and had LOD score of 2.67. The total phenotypic variance explained by the three QTLs was about 24.4% of the total variance in the population. The detection of new QTLs associated with VG tolerance will provide important informations for the seed dormancy, low temperature germination, or comparative genetics.

QTL analysis of agronomic traits in recombinant inbred lines of sunflower under partial irrigation

  • Haddadi, P.;Yazdi-Samadi, B.;Naghavi, M.R.;Kalantari, A.;Maury, P.;Sarrafi, A.
    • Plant Biotechnology Reports
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    • 제5권2호
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    • pp.135-146
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    • 2011
  • The objective of the present research was to map QTLs associated with agronomic traits such as days from sowing to flowering, plant height, yield and leaf-related traits in a population of recombinant inbred lines (RILs) of sunflower (Helianthus annuus). Two field experiments were conducted with well-irrigated and partially irrigated conditions in randomized complete block design with three replications. A map with 304 AFLP and 191 SSR markers with a mean density of 1 marker per 3.7 cM was used to identify QTLs related to the studied traits. The difference among RILs was significant for all studied traits in both conditions. Three to seven QTLs were found for each studied trait in both conditions. The percentage of phenotypic variance ($R^2$) explained by QTLs ranged from 4 to 49%. Three to six QTLs were found for each yield-related trait in both conditions. The most important QTL for grain yield per plant on linkage group 13 (GYP-P-13-1) under partial-irrigated condition controls 49% of phenotypic variance ($R^2$). The most important QTL for 1,000-grain weight (TGW-P-11-1) was identified on linkage group 11. Favorable alleles for this QTL come from RHA266. The major QTL for days from sowing to flowering (DSF-P-14-1) were observed on linkage group 14 and explained 38% of the phenotypic variance. The positive alleles for this QTL come from RHA266. The major QTL for HD (HD-P-13-1) was also identified on linkage group 13 and explained 37% of the phenotypic variance. Both parents (PAC2 and RHA266) contributed to QTLs controlling leaf-related traits in both conditions. Common QTL for leaf area at flowering (LAF-P-12-1, LAF-W-12-1) was detected in linkage group 12. The results emphasise the importance of the role of linkage groups 2, 10 and 13 for studied traits. Genomic regions on the linkage groups 9 and 12 are specific for QTLs of leaf-related traits in sunflower.