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Mapping of Quantitative Trait Loci Associated with Viviparous Germination in Rice  

Lee, Seung-Yeob (Division of Plant Resources Science, Wonkwang University)
Ahn, Jeong-Ho (Division of Plant Resources Science, Wonkwang University)
Cha, Young-Soon (Rice Functional Genomics Team National Institute of Agricultural Biotechnology)
Yun, Doh-Won (Rice Functional Genomics Team National Institute of Agricultural Biotechnology)
Lee, Myung-Cheol (Rice Functional Genomics Team National Institute of Agricultural Biotechnology)
Eun, Moo-Young (Rice Functional Genomics Team National Institute of Agricultural Biotechnology)
Publication Information
KOREAN JOURNAL OF CROP SCIENCE / v.51, no.6, 2006 , pp. 565-570 More about this Journal
Abstract
The viviparous germination (VG) with lodging caused the yield reduction and quality deterioration in rice. We carried out the evaluation of VG tolerance (on the 40th day after heading) and mapping QTLs associated with VG tolerance using the recombinant inbred lines (M/G RILs) from a cross between Milyang 23 (japonica/indica) and Gihobyeo (japonica). The VG rates of Milyang 23 and Gihobyeo were 0.0 and 7.0%, respectively. The averaged VG rate of 162 M/G RILs was 7.7%, and their range was from 0.0 to 50.9%. Of the 162 RILs, 144 lines were tolerant less than 10%, and 18 lines were susceptible more than 10%. Using the M/G RIL Map, three QTLs associated with the viviparous trait were detected on chromosome 2 (qVG 2-1 and qVG 2-2) and 8 (qVG 8). qVG 2-1 was linked to RM 32D and RZ 166, and had LOD score of 2.97. qVG 2-2 was tightly linked to E13M59.119-Pl and E13M59.M003-P2, and showed higher LOD score of 3.41. qVG 8 was linked to RM33 and TCT116, and had LOD score of 2.67. The total phenotypic variance explained by the three QTLs was about 24.4% of the total variance in the population. The detection of new QTLs associated with VG tolerance will provide important informations for the seed dormancy, low temperature germination, or comparative genetics.
Keywords
quantitative trait loci; recombinant inbred line; rice; viviparous germination;
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1 Frey, A., B. Godin, M. Bonnet, B. Sotta, and A. Marion-Poll. 2004. Maternal synthesis of abscisic acid control seed development and yield in Nicotiana plumbaginifolia. Planta 218:958-964   DOI
2 Kato, K., W Nakamura, T. Tabiki, H. Miura, and S. Sawada. 2001. Detection of loci controlling seed dormancy on group 4 chromosomes of wheat and comparative mapping with rice and barley genomes. Theor. Appl. Genet. 102 : 980-985   DOI
3 Kim, Y. W 1995. Chemical Components Related with Seed Dormancy and Viviparous Germination in Rice. Kor. J. Crop Sci. 40: 113-119   과학기술학회마을
4 Miura, K., S. Y. Lin, M. Yano, and T. Nagamine. 2002. Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.), Theor. Appl. Genet. 104 : 981-986   DOI
5 Nelson, J. C. 1997. QGENE, software for marker-based genomic analysis and breeding. Mol. Breed. 3 : 239-24   DOI   ScienceOn
6 Cai, H. W. and H. Morishima. 2000. Genomic regions affecting seed shattering and seed dormancy in rice, Theor. Appl. Genet. 100 : 840-846   DOI
7 Cho, Y. G., S. R. McCouch, M. Kuiper, M. R. Kang, J. Pot, J. T. M. Groenen, and M. Y. Eun. 1998. Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor. Appl. Genet. 97: 370-380   DOI
8 RDA. Rural Development Administration of Korea. 1993. Standard investigation system for crops. 3th edition, RDA, Suweon, Korea, p. 603
9 Bailey, P. C., R. S. McKibbin, J. R. Lenton, M. J. Holdsworth, J. E. Flintham, and M. D. Gale. 1999. Genetic map locations for orthologous Vpl genes in wheat and rice. Theor. Appl. Genet. 98 : 281-284   DOI
10 Castor, L. and F. Frederiken. 1977. Seed moulding of grain sorghums caused by Fusarium and Curvularia. Proc. Annu. Phytopatho J. Soc. 4 : 151
11 Oh, S. H., C. Y. Kim, C. H. Kim, S. Y. Kim, and J. Y. Lee. 1987. Influence of viviparous germination on quality and yield potential of rice. Res. Rep. RDA (Crops). 29(1): 68-73
12 Kulwal, P. L., N. Kumar, A. Gaur, P. Khurana, J. P. Khurana, A. K. Tyagi, H. S. Balyan, and P. K. Gupta. 2005. Mapping of a major QTL for pre-harvest sprouting tolerance on chromosome 3A in bread wheat. Theor. Appl. Genet.111: 1052-1059   DOI   ScienceOn
13 Dong Y., E. Tsuzuki, H. Kamiunten, H. Terao, D. Lin, M. Matsuo, and Y. Zheng. 2003. Identification of quantitative trait loci associated with pre-harvest sprouting resistance in rice (Oryza sativa L.). Field Crops Res. 81 : 133-139   DOI   ScienceOn
14 McCouch, S. R., Y. G. Cho, M. Yano, E. Paul, M. Blinstrub, H. Morishima, and T. Kinoshita. 1997. Report on QTL nomenclature. Rice Genet. Newslett, 14: 11-13
15 Wan, J. M., L. Jiang, J. Y Tang, C. M. Wang, M. Y Hou, W. Jing, and L. X. Zhang. 2006. Genetic dissection of the seed dormancy trait in cultivated rice (Oryza sativa L.). Plant Sci. 170 : 786-792   DOI   ScienceOn
16 Anderson, J. A., M. E. Sorrells, and S. D. Tanksley. 1993. RFLP analysis of genomic regions associated with resistance to preharvest sprouting in wheat. Crop Sci. 33 : 453-459   DOI   ScienceOn
17 Tanksley, S. D. 1993. Mapping polygenes. Ann. Rev. Genet. 27, 205-233   DOI   ScienceOn
18 Wan, J. M., C. M. Wang, and H. Ikehashi. 2005. Quantitative trait loci associated with seed dormancy in rice. Crop Sci. 45 : 712-716   DOI   ScienceOn
19 Suh, K. H. and Y W. Kim. 1994. Varietal difference in viviparous germination at different days after heading and temperature conditions in rice. Kor. J. Crop Sci. 39 : 187-192   과학기술학회마을
20 Guo, L., L. Zhu, Y. Xu, D. Zeng, P. Wu, and Q. Qian. 2004. QTL analysis of seed dormancy in rice (Oryza sativa L.). Euphytica 140: 155-162   DOI
21 Seshu, D. V. and M. E. Sorrells. 1986. Genetics studies on seed dormancy in rice. In: Rice Genetics. IRRI, Los Banos, Philippines, pp. 369-382
22 Wan, J. M., T. Nakazaki, K. Kawaura, and H. Ikehashi. 1997. Identification of marker loci for seed dormancy in rice (Oryza sativa L.). Crop Sci. 37: 1759-1763   DOI   ScienceOn
23 Lin, S. Y., T. Sasaki, and M. Yano. 1998. Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L. using backcross inbred lines, Theor. Appl. Genet. 96 : 997-1003   DOI
24 Beachell, H. M. 1943. Effect on photoperiod on the varieties grown in the field. J. Agric. Res. 66 : 325-331
25 Quarrie, S. A., D.A. Laurie, J. H. Zhu, C. Lebreton, A. Semikhodski, A. Steed, H. Witsenboer, and C. Calestani. 1997. QTL analysis to study the association between leaf size and abscisic acid accumulation in drought rice leaves and comparisons across cereals. Plant Mol. Biol. 35 : 155-165   DOI   ScienceOn
26 Knox, R. E., F. R. Clarke, and S. L. Fox. 2005. Genetic analysis of pre-harvest sprouting in a durum wheat cross. Euphytica 143 : 261-264   DOI
27 Li, C., P. Ni, M. V. Francki, Y. Zhang, D. Schibeci, H. Li, A. Tarr, J. Wang, M. Cakir, J. Yu, M. Bellgard, R. Lance, and R. Appels. 2004. Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct. Integr. Genomics. 4 : 84-93   DOI
28 Gubler, F., A. A. Millar, and J. V. Jacobsen. 2005. Dormancy release, ABA and pre-harvest sprouting. Cur. Opin. in Plant Biol. 8: 183-187   DOI   ScienceOn
29 Ju, Y. C., S. W Han, J. S. Park, and K. Y. Park. 2000b. Effective Screening Method for Viviparous Germination of Rice. Kor. J. Crop Sci. 45 : 103-107   과학기술학회마을
30 Karrsen, C. M., D. L. C. Brinkhorst-Van der Swan, A. D. Breekland, and M. Koomneef. 1983. Induction of seed dormancy during seed development by endogenous abscisic acid: studies on abscisic acid-deficient genotypes of Arabidopsis thaliana L. Heynh. Planta 157: 158-165
31 Lohwasser, U., M. S. Roder, and A. Bomer. 2005. QTL mapping of the domestication traits pre-harvest sprouting and dormancy in wheat (Triticum aestivum L.). Euphytica 143 : 247-249   DOI
32 Ju, Y. C., S. W Han, Y. C. Cho, and K. Y. Park. 2000a. Effects of submerged condition, temperature, and ripening stages on viviparous germination of rice. Kor. J. Crop Sci. 45: 20-25   과학기술학회마을