• BMB Reports
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• v.37 no.6
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• pp.648-656
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• 2004

This paper deals with the development of a predictive probabilistic model, a composite dependency-reflecting model (CDRM), which was designed to detect core promoter regions and transcription start sites (TSS) in vertebrate genomic DNA sequences, an issue of some importance for genome annotation. The model actually represents a combination of first-, second-, third- and much higher order or long-range dependencies obtained using the expanded maximal dependency decomposition (EMDD) procedure, which iteratively decomposes data sets into subsets on the basis of dependency degree and patterns inherent in the target promoter region to be modeled. In addition, decomposed subsets are modeled by using a first-order Markov model, allowing the predictive model to reflect dependency between adjacent positions explicitly. In this way, the CDRM allows for potentially complex dependencies between positions in the core promoter region. Such complex dependencies may be closely related to the biological and structural contexts since promoter elements are present in various combinations separated by various distances in the sequence. Thus, CDRM may be appropriate for recognizing core promoter regions and TSSs in vertebrate genomic contig. To demonstrate the effectiveness of our algorithm, we tested it using standardized data and real core promoters, and compared it with some current representative promoter-finding algorithms. The developed algorithm showed better accuracy in terms of specificity and sensitivity than the promoter-finding ones used in performance comparison.

• Proceedings of the Computational Structural Engineering Institute Conference
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• 2008.04a
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• pp.416-421
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• 2008

A Metropolis genetic algorithm (MGA) is a newly-developed hybrid algorithm combining simple genetic algorithm (SGA) and simulated annealing (SA). In the algorithm, favorable features of Metropolis criterion of SA are incorporated in the reproduction operations of SGA. This way, MGA alleviates the disadvantages of finding imprecise solution in SGA and time-consuming computation in SA. It has been successfully applied and the efficiency has been verified for the practical structural design optimization. However, applicability of MGA for the wider range of problems should be rigorously proved through the solution of mathematical optimization problems. Thus, performances of MGA for the typical mathematical problems are investigated and compared with those of conventional algorithms such as SGA, micro genetic algorithm (${\mu}GA$), and SA. And, for better application of MGA, the effects of acceptance level are also presented. From numerical Study, it is again verified that MGA is more efficient and robust than SA, SGA and ${\mu}GA$ in the solution of mathematical optimization problems having various features.

• Journal of Ocean Engineering and Technology
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• v.20 no.1 s.68
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• pp.69-76
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• 2006

The design of efficient search path to maximize the Cumulative Detection Probability(CDP) is mainly dependent on experience and intuition when searcher detect the target using SONAR in the ocean. Recently with the advance of modeling and simulation method, it has been possible to access the optimization problems more systematically. In this paper, a method for the optimal search path calculation is developed based on the combination of the genetic algorithm and the calculation algorithm for detection range. We consider the discrete system for search path, space, and time, and use the movement direction of the SONAR for the gene of the genetic algorithm. The developed algorithm, OASPP(Optimal Acoustic Search Path Planning), is shown to be effective, via a simulation, finding the optimal search path for the case when the intuitive solution exists. Also, OASPP is compared with other algorithms for the measure of efficiency to maximize CDP.

• The Journal of Korea Robotics Society
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• v.17 no.3
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• pp.373-380
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• 2022

This paper considers a method of fast correspondence matching for iterative closest point (ICP) algorithm. In robotics, the ICP algorithm and its variants have been widely used for pose estimation by finding the translation and rotation that best align two point clouds. In computational perspectives, the main difficulty is to find the correspondence point on the reference point cloud to each observed point. Jump-table-based correspondence matching is one of the methods for reducing computation time. This paper proposes a method that corrects errors in an existing jump-table-based correspondence matching algorithm. The criterion activating the use of jump-table is modified so that the correspondence matching can be applied to the situations, such as point-cloud registration problems with highly curved surfaces, for which the existing correspondence-matching method is non-applicable. For demonstration, both hardware and simulation experiments are performed. In a hardware experiment using Hokuyo-10LX LiDAR sensor, our new algorithm shows 100% correspondence matching accuracy and 88% decrease in computation time. Using the F1TENTH simulator, the proposed algorithm is tested for an autonomous driving scenario with 2D range-bearing point cloud data and also shows 100% correspondence matching accuracy.

• Journal of Internet Computing and Services
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• v.6 no.6
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• pp.149-161
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• 2005

Catadioptric mirrors are widely used in automatic surveillance system. The major drawback of catadioptric mirror is its unequal image resolution. Equidistance catadioptric mirror can be the solution to this problem. Even double panoramic structure can generate stereo images with single camera system. So two images obtained from double panoramic equidistance catadioptric mirror can be used in finding the depth and height values of object's points. But compared to the single catadioptric mirror. the image size of double panoramic system is relatively small. This leads to the severe accuracy problem in estimation. The exact axial alignment and the exact mount of mirror are the sources that can be avoided but the focal length variation is inevitable. In this paper, the effects of focal length variation on the computation of depth and height of object' point are explained and the effective focal length finding algorithm, using the assumption that the object's viewing angles are almost same in stereo images, is presented.

• Proceedings of the Korea Institute of Convergence Signal Processing
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• 2005.11a
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• pp.306-309
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• 2005

We consider the multi-objective optimization of a multi-service arrayed-waveguide grating-based single-hop metro WDM network with the two conflicting objectives of maximizing throughput while minimizing delay. We develop and evaluate a genetic algorithm based methodology for finding the optimal throughput-delay tradeoff curve, the so-called Pareto-optimal frontier. Our methodology provides the network architecture and the Medium Access Control protocol parameters that achieve the Pareto-optima in a computationally efficient manner. The numerical results obtained with our methodology provide the Pareto-optimal network planning and operation solution for a wide range of traffic scenarios. The presented methodology is applicable to other networks with a similar throughput-delay tradeoff.

• Journal of the Korean Operations Research and Management Science Society
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• v.33 no.4
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• pp.53-61
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• 2008

Recently, Ertogral et al.[2] suggested two models considering the transportation cost based on single-vendor single-buyer integrated production-inventory problem. Although their problem-solving algorithm guarantees solutions obtained are optimal, a limitation is revealed that its performance can be inefficient due to complete enumeration search in a certain range. In this paper, a more efficient algorithm in finding optimal solutions is suggested for the same problem suggested by Ertogral et at.[2]. Numerical examples are presented for illustrative purpose.

• Proceedings of the IEEK Conference
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• 2006.06a
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• pp.825-826
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• 2006

In this paper, we propose an algorithm that applies Rolle's theorem to automatically detect and label peak III and V of the normal, suprathreshold auditory brainstem response (ABR). ABR waveform were recorded from 55 normal-hearing ears at screening levels varying from 30 to 60 dBnHL. For each ABR waveform, the peak-finding algorithm proceeded in fourth steps: (1) Select maximum and minimum values of the target ABR waveform, (2) divide this range into n equal parts, (3) effective candidate peaks in the ABR waveform are identified using Rolle's theorem (4) peak III and V are identified from these candidate peaks based on their latency and morphology. As a result, proposed auto dectection method showed high correlation and accuracy with manual detection method performed by clinician. By using proposed algorithm, clinician can detect and label peak III and V faster and more efficient than manual detection method.

• Journal of Astronomy and Space Sciences
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• v.30 no.4
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• pp.291-298
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• 2013

The concept of the satellite formation flight is area where it is actively study with expandability and safety compare to existing satellite. For execution of duty with more safety issue, it needs to consider hot topic of space debris for operation of formation flight. In this paper, it suggests heuristic algorithm to have avoidance maneuver for space debris towards operating flight formation. Indeed it covers, using common software, operating simulation to nearest space environment and not only to have goal of avoidance but also minimizing the usage of fuel and finding optimization for maximizing cycle of formation flight. For improvement on convergence speed of existing heuristic algorithm, it substitute to hybrid heuristic algorithm, PSOGSA, and the result of simulation, it represents the satisfaction of minimum range for successful avoidance maneuver and compare to not using avoidance maneuver, it keeps more than three times of formation maintenance performance. From these, it is meaningful results of showing several success goals like simple avoidance collision and fuel usage and decreasing number of times of maintaining formation maneuver.

• The Journal of Korean Institute of Electromagnetic Engineering and Science
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• v.28 no.4
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• pp.347-350
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• 2017

In this paper, we implemented a real-time 2.4 GHz direction finding system using a time-modulated array(TMA) and an Universal Software Radio Peripheral(USRP). Our system consists of two commercial monopole antennas, self-designed switch board, and an USRP, and it is controlled using LabVIEW program in real-time. From measured results, it is verified that our system can exactly detect the incident angle within 4 degree in the range of 30 degree. Our direction finding system has advantages of a simple hardware architecture than conventional one with multiple receivers, and a simple algorithm only by using a main lobe and a first side-lobe of switching frequency.