• Title/Summary/Keyword: principal component analysis

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Factors analysis of the cyanobacterial dominance in the four weirs installed in of Nakdong River (낙동강의 중·하류 4개보에서 남조류 우점 환경 요인 분석)

  • Kim, Sung jin;Chung, Se woong;Park, Hyung seok;Cho, Young cheol;Lee, Hee suk
    • Proceedings of the Korea Water Resources Association Conference
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    • 2019.05a
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    • pp.413-413
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    • 2019
  • 하천과 호수에서 남조류의 이상 과잉증식 문제(이하 녹조문제)는 담수생태계의 생물다양성을 감소시키며, 음용수의 이취미 원인물질을 발생시켜 물 이용에 장해가 된다. 또한 독소를 생산하는 유해남조류가 대량 증식할 경우에는 가축이나 인간의 건강에 치명적 해를 끼치기도 한다. 그 동안 국내에서 녹조문제는 댐 저수지와 하구호와 같은 정체수역에서 간헐적으로 문제를 일으켰으나, 4대강사업(2010-2011)으로 16개의 보가 설치된 이후 낙동강, 금강, 영산강 등 대하천에서도 광범위하게 발생되고 있어 중요한 사회적 환경적 이슈로 대두되었다. 한편, 대하천에 설치된 보 구간에서 빈번히 발생하는 녹조현상의 원인에 대해서는 전 지구적 기온상승에 따른 기후변화의 영향이라는 주장과 유역으로부터 영양염류의 과도한 유입, 가뭄에 따른 유량감소, 보 설치에 따른 체류시간 증가 등 다양한 의견이 제시되고 있으나, 대상 유역과 수체의 특성에 따라 녹조 발생의 원인이 상이하거나 또는 다양한 요인이 복합적으로 작용하기 때문에 보편적 해석(universal interpretation)이 어려운 것이 현실이다. 따라서 각 수계별, 보별 녹조현상에 대한 정확한 원인분석과 효과적인 대책 마련을 위해서는 집중된 실험자료와 데이터마이닝 기법에 근거로 한 보다 과학적이고 객관적인 접근이 이루어져야 한다. 본 연구에서는 2012년 보 설치 이후 남조류에 의한 녹조현상이 빈번히 발생하고 있는 낙동강 4개보(강정고령보, 달성보, 합천창녕보, 창녕함안보)를 대상으로 집중적인 현장조사와 실험분석을 수행하고, 수집된 기상, 수문, 수질, 조류 자료에 대해 통계분석과 다양한 데이터모델링 기법을 적용하여 보별 남조류 우점 환경조건과 이를 제어하기 위한 주요 조절변수를 규명하는데 있다. 연구대상 보 별 수질과 식물플랑크톤의 정성 및 정량 실험은 2017년 5월부터 2018년 11월까지 2년에 걸쳐 실시하였으며, 남조류 세포수 밀도와 환경요인과의 상관성 분석을 실시하고, 단계적 다중회귀모델(Step-wise Multiple Linear Regressions, SMLR), 랜덤포레스트(Random Forests, RF) 모델과 재귀적 변수 제거 기법(Recursive Feature Elimination using Random Forest, RFE-RF)을 이용한 변수중요도 평가, 의사결정나무(Decision Tree, DT), 주성분분석(Principal Component Analysis, PCA) 기법 등 다양한 모수적 및 비모수적 데이터마이닝 결과를 바탕으로 각 보별 남 조류 우점 환경요인을 종합적으로 해석하였다.

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Genome-wide analyses of the Jeju, Thoroughbred, and Jeju crossbred horse populations using the high density SNP array

  • Kim, Nam Young;Seong, Ha-Seung;Kim, Dae Cheol;Park, Nam Geon;Yang, Byoung Chul;Son, Jun Kyu;Shin, Sang Min;Woo, Jae Hoon;Shin, Moon Cheol;Yoo, Ji Hyun;Choi, Jung-Woo
    • Genes and Genomics
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    • v.40 no.11
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    • pp.1249-1258
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    • 2018
  • The Jeju horse is an indigenous Korean horse breed that is currently registered with the Food and Agriculture Organization of the United Nations. However, there is severe lack of genomic studies on Jeju horse. This study was conducted to investigate genetic characteristics of horses including Jeju horse, Thoroughbred and Jeju crossbred (Jeju${\times}$Thoroughbred) populations. We compared the genomes of three horse populations using the Equine SNP70 Beadchip array. Short-range Linkage disequilibrium was the highest in Thoroughbred, whereas $r^2$ values were lowest in Jeju horse. Expected heterozygosity was the highest in Jeju crossbred (0.351), followed by the Thoroughbred (0.337) and Jeju horse (0.311). The level of inbreeding was slightly higher in Thoroughbred (-0.009) than in Jeju crossbred (-0.035) and Jeju horse (-0.038). $F_{ST}$ value was the highest between Jeju horse and Thoroughbred (0.113), whereas Jeju crossbred and Thoroughbred showed the lowest value (0.031). The genetic relationship was further assessed by principal component analysis, suggesting that Jeju crossbred is more genetically similar to Thoroughbred than Jeju horse population. Additionally, we detected potential selection signatures, for example, in loci located on LCORL/NCAPG and PROP1 genes that are known to influence body. Genome-wide analyses of the three horse populations showed that all the breeds had somewhat a low level of inbreeding within each population. In the population structure analysis, we found that Jeju crossbred was genetically closer to Thoroughbred than Jeju horse. Furthermore, we identified several signatures of selection which might be associated with traits of interest. To our current knowledge, this study is the first genomic research, analyzing genetic relationships of Jeju horse, Thoroughbred and Jeju crossbred.

Identifying Key Competencies Required for STEM Occupations (과학, 기술, 공학, 수학(STEM) 직종에 요구되는 핵심 역량 분석)

  • Jang, Hyewon
    • Journal of The Korean Association For Science Education
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    • v.38 no.6
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    • pp.781-792
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    • 2018
  • In modern society, as technology develops and industry diversifies, students can choose from a variety of career paths. Since science, technology, engineering, and mathematics require a longer education and experience than other fields, it is important to design science education policies based on the competencies required for science, technology, engineering, and mathematics (STEM) occupations. This study explores the definition of science and technology manpower and STEM occupations and identifies core competencies of STEM occupations using standard job information operated and maintained by the US Department of Labor ($O^*NET$). We specially analyzed ratings of the importance of skills (35 ratings), knowledge (33 ratings), and work activities (41 ratings) conducting descriptive analysis and principal component analysis (PCA). As a result, core competencies of STEM occupations consist of STEM problem-solving competency, Management competency, Technical competency, Social service competency, Teaching competency, Design competency, Bio-chemistry competency, and Public service competency, which accounts for 70% of the total variance. This study can be a reference for setting the curriculum and educational goals in secondary and college education by showing the diversity of science and technology occupations and the competencies required for STEM occupations.

Analysis of Tidal Channel Variations Using High Spatial Resolution Multispectral Satellite Image in Sihwa Reclaimed Land, South Korea (고해상도 다분광 인공위성영상자료 기반 시화 간척지 갯골 변화 양상 분석)

  • Jeong, Yongsik;Lee, Kwang-Jae;Chae, Tae-Byeong;Yu, Jaehyung
    • Korean Journal of Remote Sensing
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    • v.36 no.6_2
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    • pp.1605-1613
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    • 2020
  • The tidal channel is a coastal sedimentary terrain that plays the most important role in the formation and development of tidal flats, and is considered a very important index for understanding and distribution of tidal flat sedimentation/erosion terrain. The purpose of this study is to understand the changes in tidal channels by a period after the opening of the floodgate of the seawall in the reclaimed land of Sihwa Lake using KOMPSAT high-resolution multispectral satellite image data and to evaluate the applicability and efficiency of high-resolution satellite images. KOMPSAT 2 and 3 images were used for extraction of the tidal channels' lineaments in 2009, 2014, and 2019 and were applied to supervised classification method based on Principal Component Analysis (PCA), Artificial Neural Net (ANN), Matched Filtering (MF), and Spectral Angle Mapper (SAM) and band ratio techniques using Normalized Difference Water Index (NDWI) and MF/SAM. For verification, a numerical map of the National Geographic Information Service and Landsat 7 ETM+ image data were utilized. As a result, KOMPSAT data showed great agreement with the verification data compared to the Landsat 7 images for detecting a direction and distribution pattern of the tidal channels. However, it has been confirmed that there will be limitations in identifying the distribution of tidal channels' density and providing meaningful information related to the development of the sedimentary process. This research is expected to present the possibility of utilizing KOMPSAT image-based high-resolution remote exploration as a way of responding to domestic intertidal environmental issues, and to be used as basic research for providing multi-platform-image-based convergent thematic maps and topics.

Detection of Drought Stress in Soybean Plants using RGB-based Vegetation Indices (RGB 작물 생육지수를 활용한 콩 한발 스트레스 판별기술 평가)

  • Sang, Wan-Gyu;Kim, Jun-Hwan;Baek, Jae-Kyeong;Kwon, Dongwon;Ban, Ho-Young;Cho, Jung-Il;Seo, Myung-Chul
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.23 no.4
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    • pp.340-348
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    • 2021
  • Continuous monitoring of RGB (Red, Green, Blue) vegetation indices is important to apply remote sensing technology for the estimation of crop growth. In this study, we evaluated the performance of eight vegetation indices derived from soybean RGB images with various agronomic parameters under drought stress condition. Drought stress influenced the behavior of various RGB vegetation indices related soybean canopy architecture and leaf color. In particular, reported vegetation indices such as ExGR (Excessive green index minus excess red index), Ipca (Principal Component Analysis Index), NGRDI (Normalized Green Red Difference Index), VARI (Visible Atmospherically Resistance Index), SAVI (Soil Adjusted Vegetation Index) were effective tools in obtaining canopy coverage and leaf chlorophyll content in soybean field. In addition, the RGB vegetation indices related to leaf color responded more sensitively to drought stress than those related to canopy coverage. The PLS-DA (Partial Squares-Discriminant Analysis) results showed that the separation of RGB vegetation indices was distinct by drought stress. The results, yet preliminary, display the potential of applying vegetation indices based on RGB images as a tool for monitoring crop environmental stress.

Plasma metabolites associated with physiological and biochemical indexes indicate the effect of caging stress on mallard ducks (Anas platyrhynchos)

  • Zheng, Chao;Wu, Yan;Liang, Zhen Hua;Pi, Jin Song;Cheng, Shi Bin;Wei, Wen Zhuo;Liu, Jing Bo;Lu, Li Zhi;Zhang, Hao
    • Animal Bioscience
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    • v.35 no.2
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    • pp.224-235
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    • 2022
  • Objective: Cage rearing has critical implications for the laying duck industry because it is convenient for feeding and management. However, caging stress is a type of chronic stress that induces maladaptation. Environmental stress responses have been extensively studied, but no detailed information is available about the comprehensive changes in plasma metabolites at different stages of caging stress in ducks. We designed this experiment to analyze the effects of caging stress on performance parameters and oxidative stress indexes in ducks. Methods: Liquid chromatography tandem mass spectrometry (LC/MS-MS) was used to determine the changes in metabolites in duck plasma at 5 (CR5), 10 (CR10), and 15 (CR15) days after cage rearing and traditional breeding (TB). The associated pathways of differentially altered metabolites were analyzed using Kyoto encyclopedia of genes and genomes (KEGG) database. Results: The results of this study indicate that caging stress decreased performance parameters, and the plasma total superoxide dismutase levels were increased in the CR10 group compared with the other groups. In addition, 1,431 metabolites were detected. Compared with the TB group, 134, 381, and 190 differentially produced metabolites were identified in the CR5, CR10, and CR15 groups, respectively. The results of principal component analysis (PCA) show that the selected components sufficiently distinguish the TB group and CR10 group. KEGG analysis results revealed that the differentially altered metabolites in duck plasma from the CR5 and TB groups were mainly associated with ovarian steroidogenesis, biosynthesis of unsaturated fatty acids, and phenylalanine metabolism. Conclusion: In this study, the production performance, blood indexes, number of metabolites and PCA were compared to determine effect of the caging stress stage on ducks. We inferred from the experimental results that caging-stressed ducks were in the sensitive phase in the first 5 days after caging, caging for approximately 10 days was an important transition phase, and then the duck continually adapted.

Item-Level Psychometrics of the 12 Items of the Coping Orientation to Problems Experienced Scale (스트레스 대처 척도 12개 항목에 대한 심리측정 속성)

  • Nam, Sanghun;Hilton, Claudia L.;Lee, Mi-Jung;Pritchard, Kevin T.;Bae, Suyeong;Hong, Ickpyo
    • Therapeutic Science for Rehabilitation
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    • v.11 no.3
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    • pp.65-80
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    • 2022
  • Objective : This study examined the psychometric properties of the 12-item Coping Orientation to Problems Experienced Scale (COPE) using Rasch analysis. COPE is one of the instruments used to measure stress-coping skills. Methods : The study participants were 480 community-dwelling older adults. We tested the instrument's unidimensionality assumption using principal component analysis (PCA). Item fit was examined using infit-and-outfit mean-square (MnSq) and standardized fit statistics (ZSTD). The precision and item difficulty hierarchies of the instrument were examined. The item-difficulty hierarchy was investigated to identify the easy and difficult items. We tested differential item functioning (DIF) for sex and age groups. Results : PCA revealed that the instrument met the unidimensionality assumption (eigenvalue = 1.78). Among the 12 items, item 2 was removed because of misfit (Infit MnSq = 1.33, Infit ZSTD = 5.05, Outfit MnSq = 1.56, Outfit ZSTD = 7.15). The remaining 11 items demonstrated a conceptual item-difficulty hierarchy. The person strata value was 3.10, which is equivalent to a reliability index value of 0.81. There was no DIF for the sex and age groups (DIF contrast <0.27). Conclusion : The findings indicated that the revised COPE-11 has adequate item-level psychometric properties and can accurately measure stress coping skills.

Effects of diet and castration on fatty acid composition and volatile compounds in the meat of Korean native black goats

  • Jinwook Lee;Hye-Jin Kim;Sung-Soo Lee;Kwan-Woo Kim;Dong-Kyo Kim;Sang-Hoon Lee;Eun-Do Lee;Bong-Hwan Choi;Farouq Heidar Barido;Aera Jang
    • Animal Bioscience
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    • v.36 no.6
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    • pp.962-972
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    • 2023
  • Objective: This study determined the effects of dietary treatments and castration on meat quality, fatty acids (FAs) profiles, and volatile compounds in Korean native black goats (KNBG, Capra hircus coreanae), including the relationship between the population of rumen microbiomes and meat FA profiles. Methods: Twenty-four KNBG (48.6±1.4 kg) were randomly allocated to one of four treatments arranged into a 2×2 factorial structure. The factors were dietary forage to concentrate ratio (high forage [HF, 80:20] and low forage [LF, 20:80]), and a castration treatment (castration [CA] vs non-castration [NCA]). Results: Among meat quality traits, the CA group exhibited a higher percentage of crude fat and water holding capacity (p<0.05). The profiles of the saturated fatty acid (SFA) in meat sample derived from CA KNBG showed a significantly lower percentage compared to NCA individuals, due to the lower proportion of C14:0 and C18:0. Feeding a high-forage diet to KNBG increased the formation of C18:1n7, C18:3n3, C20:1n9, C22:4n6 in meat, and polyunsaturated fatty acid (PUFA) profiles (p<0.05). Consequently, the n6:n3 ratio declined (p<0.05). There was an interaction between dietary treatment and castration for formation of C20:5n3 (p<0.05), while C18:1n9, C22:6n3, monounsaturated fatty acid (MUFA) and the MUFA:SFA ratio were influenced by both diet and castration (p<0.05). Nine volatile compounds were identified and were strongly influenced by both dietary treatments, castration (p<0.05), and their interaction. In addition, principal component analysis (PCA) revealed distinctly different odor patterns in the NCA goats fed LF diets. Spearman correlation analysis showed a high correlation between rumen bacteria and meat PUFAs. Conclusion: These results suggest the essential effects of the rumen microbial population for the synthesis of meat FAs and volatile compounds in KNBG meat, where dietary intake and castration also contribute substantially.

Investigating the Relationship Between Vehicle Front Images and Voice Assistants (자동차 전면부와 음성 어시스턴트의 스타일 관계 분석)

  • Min-Jung Park;So-Yeong Min;Tae-Su Kim;Hyeon-Jeong Suk
    • Science of Emotion and Sensibility
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    • v.25 no.4
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    • pp.129-138
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    • 2022
  • In the context of the increasing applications of voice assistants in vehicles, we focused on the association between the visual appeal of the cars and the acoustic characteristics of the voice assistants. This study aimed to investigate the relationship between the visual appeal of the vehicle and the voice assistant based on their emotional characteristics. A total of 15 adjectives were used to assess the emotional characteristics of 12 types of cars and six types of voices. An online interview was carried out, instructing participants to match three adjectives with the presented car images or voices. This was followed with a brief interview to allow the participants to reflect on the adjective matches. Based on the assessments, we performed principal component analysis (PCA) to determine factors. We aimed to deploy the cars and voices and analyze the patterns of clustering. The PCA analysis revealed two factors profiled as "Light-Heavy" and "Comfortable-Radical." Both car and voice stimuli were deployed in a two-dimensional space showing the internal relationship within and between the two substances. Based on the coordination data, a hierarchical cluster grouped the 18 stimuli into four groups labeled as challenge, elegance, majesty, and vigor. This study identified two latent factors describing the emotional characteristics of both car images and voice types clustered into four groups based on their emotional characteristics. The coherent matches between car style and voice type are expected to address the design concept more successfully.

A Desirability Function-Based Multi-Characteristic Robust Design Optimization Technique (호감도 함수 기반 다특성 강건설계 최적화 기법)

  • Jong Pil Park;Jae Hun Jo;Yoon Eui Nahm
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.46 no.4
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    • pp.199-208
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    • 2023
  • Taguchi method is one of the most popular approaches for design optimization such that performance characteristics become robust to uncontrollable noise variables. However, most previous Taguchi method applications have addressed a single-characteristic problem. Problems with multiple characteristics are more common in practice. The multi-criteria decision making(MCDM) problem is to select the optimal one among multiple alternatives by integrating a number of criteria that may conflict with each other. Representative MCDM methods include TOPSIS(Technique for Order of Preference by Similarity to Ideal Solution), GRA(Grey Relational Analysis), PCA(Principal Component Analysis), fuzzy logic system, and so on. Therefore, numerous approaches have been conducted to deal with the multi-characteristic design problem by combining original Taguchi method and MCDM methods. In the MCDM problem, multiple criteria generally have different measurement units, which means that there may be a large difference in the physical value of the criteria and ultimately makes it difficult to integrate the measurements for the criteria. Therefore, the normalization technique is usually utilized to convert different units of criteria into one identical unit. There are four normalization techniques commonly used in MCDM problems, including vector normalization, linear scale transformation(max-min, max, or sum). However, the normalization techniques have several shortcomings and do not adequately incorporate the practical matters. For example, if certain alternative has maximum value of data for certain criterion, this alternative is considered as the solution in original process. However, if the maximum value of data does not satisfy the required degree of fulfillment of designer or customer, the alternative may not be considered as the solution. To solve this problem, this paper employs the desirability function that has been proposed in our previous research. The desirability function uses upper limit and lower limit in normalization process. The threshold points for establishing upper or lower limits let us know what degree of fulfillment of designer or customer is. This paper proposes a new design optimization technique for multi-characteristic design problem by integrating the Taguchi method and our desirability functions. Finally, the proposed technique is able to obtain the optimal solution that is robust to multi-characteristic performances.