• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.328-328
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• 2017

Drought is a major limiting factor that reduces rice production and occurs often especially under recent climate change. Plants have the ability to alter their developmental morphology in response to changing environment, which is known as phenotypic plasticity. In our previous studies, we found that one chromosome segment substitution line (CSSL50 derived from Nipponbare and Kasalath crosses) showed no differences in shoot and root growth as compared with the recurrent genotype, Nipponbare under non-stress condition but showed greater growth responses compared with Nipponbare under mild drought stress condition. We hypothesized that reducing root respiration as metabolic cost, which may be largely a consequence of aerenchyma formation would be one of the key mechanisms for root plasticity expression. This study aimed to evaluate the root respiration and aerenchyma formation under various soil moisture conditions among genotypes with different root plasticity. CSSL50 together with Nipponbare and Kasalath were grown under waterlogged conditions (Control) and mild drought stress conditions (20% of soil moisture content) in a plastic pot ($11cm{\times}14cm$, ${\varphi}{\times}H$) and PVC tube ($3cm{\times}30cm$, ${\varphi}{\times}H$). Root respiration rate was measured with infrared gas analyzer (IRGA, GMP343, Vaisala, Finland) with a closed static chamber system. There was no significant difference between genotypes in control for shoot and root growth as well as root respiration rate. In contrast, all the genotypes increased their root respiration rates in response to mild drought stress. However, CSSL50 showed lower root respiration rate than Nipponbare, which was associated by higher root aerenchyma formation that was estimated based on internal gas space (porosity) under mild drought stress conditions. Furthermore, there were significant negative correlations between root length and root respiration rate. These results imply that reducing the metabolic cost (= root respiration rate) is a key mechanism for root plasticity expression, which CSSL50 showed under mild drought.

• Asian-Australasian Journal of Animal Sciences
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• 제30권10호
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• pp.1382-1387
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• 2017

Objective: During the last decade, genetic evaluation of dairy cows using longitudinal data (test day milk yield or 305-day milk yield) using random regression method has been officially adopted in several countries. The objectives of this study were to estimate covariance functions for genetic and permanent environmental effects and to obtain genetic parameters of 305-day milk yield over seven parities. Methods: Data including 60,279 total 305-day milk yield of 17,309 Iranian Holstein dairy cows in 7 parities calved between 20 to 140 months between 2004 and 2011. Residual variances were modeled by homogeneous and step functions with 7 and 10 classes. Results: The results showed that a third order polynomial for additive genetic and permanent environmental effects plus a step function with 10 classes for the residual variance was the most adequate and parsimonious model to describe the covariance structure of the data. Heritability estimates obtained by this model varied from 0.17 to 0.28. The performance of this model was better than repeatability model. Moreover, 10 classes of residual variance produce the more accurate result than 7 classes or homogeneous residual effect. Conclusion: A quadratic Legendre polynomial for additive genetic and permanent environmental effects with 10 step function residual classes are sufficient to produce a parsimonious model that explained the change in 305-day milk yield over consecutive parities of Iranian Holstein cows.

• Journal of Animal Science and Technology
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• 제47권2호
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• pp.159-166
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• 2005

Porcine myostatin(MS1N) gene plays a key role in the differentiation of myoblast and muscle development. Genetic polymorphism was screened by single stranded conformation polymorphism(SSCP) analysis and subsequent DNA sequencing detected a nucleotide substitution(C2150T) in exon 3 of MSIN gene. Phenotypic association of the polymorphism was tested in a Landrace population and positive effects of the allele T for lean growth traits were found in the population. Even though it is not significant, the pigs have IT and TC genotypes were heavier for the body weight at birth and at twenty weeks of age than those containing genotype. Cc. However, the allele T was significantly associated with higher eye muscle area(P < 0.05). As a result of this study, we suggested that the allele T in exon 3 of MSTN gene comes a significant effect for increasing the eye muscle area without decreasing backfat thickness. This polymorphism did not change the amino acid but Taq I -RFLP matched to SSCP band patterns in exon 3 of MSTN gene, which will be an useful molecular marker for breeding of Landrace pigs.

• The Plant Pathology Journal
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• 제32권4호
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• pp.300-310
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• 2016

Pathogen infection in plants induces complex responses ranging from gene expression to metabolic processes in infected plants. In spite of many studies on biotic stress-related changes in host plants, little is known about the metabolic and phenotypic responses of the host plants to Pseudomonas cichorii infection based on image-based analysis. To investigate alterations in tomato plants according to disease severity, we inoculated plants with different cell densities of P. cichorii using dipping and syringe infiltration methods. High-dose inocula (${\geq}10^6cfu/ml$) induced evident necrotic lesions within one day that corresponded to bacterial growth in the infected tissues. Among the chlorophyll fluorescence parameters analyzed, changes in quantum yield of PSII (${\Phi}PSII$) and non-photochemical quenching (NPQ) preceded the appearance of visible symptoms, but maximum quantum efficiency of PSII ($F_v/F_m$) was altered well after symptom development. Visible/near infrared and chlorophyll fluorescence hyperspectral images detected changes before symptom appearance at low-density inoculation. The results of this study indicate that the P. cichorii infection severity can be detected by chlorophyll fluorescence assay and hyperspectral images prior to the onset of visible symptoms, indicating the feasibility of early detection of diseases. However, to detect disease development by hyperspectral imaging, more detailed protocols and analyses are necessary. Taken together, change in chlorophyll fluorescence is a good parameter for early detection of P. cichorii infection in tomato plants. In addition, image-based visualization of infection severity before visual damage appearance will contribute to effective management of plant diseases.

• Asian-Australasian Journal of Animal Sciences
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• 제31권8호
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• pp.1150-1159
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• 2018

Objective: Non-synonymous single nucleotide polymorphisms (nsSNPs) were identified in Berkshire selective sweep regions and then were investigated to discover genetic nsSNP mechanisms that were potentially associated with Berkshire domestication and meat quality. We further used bioinformatics tools to predict damaging amino-acid substitutions in Berkshire-related nsSNPs. Methods: nsSNPs were examined in whole genome resequencing data of 110 pigs, including 14 Berkshire pigs, generated using the Illumina Hiseq2000 platform to identify variations that might affect meat quality in Berkshire pigs. Results: Total 65,550 nsSNPs were identified in the mapped regions; among these, 319 were found in Berkshire selective-sweep regions reported in a previous study. Genes encompassing these nsSNPs were involved in lipid metabolism, intramuscular fatty-acid deposition, and muscle development. The effects of amino acid change by nsSNPs on protein functions were predicted using sorting intolerant from tolerant and polymorphism phenotyping V2 to reveal their potential roles in biological processes that may correlate with the unique Berkshire meat-quality traits. Conclusion: Our nsSNP findings confirmed the history of Berkshire pigs and illustrated the effects of domestication on generic-variation patterns. Our novel findings, which are generally consistent with those of previous studies, facilitated a better understanding of Berkshire domestication. In summary, we extensively investigated the relationship between genomic composition and phenotypic traits by scanning for nsSNPs in large-scale whole-genome sequencing data.

• 한국자원식물학회지
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• 제33권6호
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• pp.578-585
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• 2020

This study was designed to assess the possibility of using medicinal plant extracts as β-lactamase inhibitors to control antibiotic-resistant Staphylococcus aureus. The susceptibilities of S. aureus ATCC 15564 (SA^WT), ciprofloxacininduced S. aureus ATCC 15564 (SA^CIP), oxacillin-induced S. aureus ATCC 15564 (SA^OXA), and clinically-isolated S. aureus CCARM 3008 (SA^CLI) to ampicillin were determined in the absence and presence of medicinal plant extracts, including Cleyera japonica (CJ), Carpinus laxiflora (CL), Euphorbia helioscopia (EH), Euscaphis japonica (EJ), Oenothera erythrosepala (OE), and Rosa multiflora (RM). The phenotypic change in the clear inhibition zones around ampicillin disc was observed for SA^WT, SA^CIP, and SA^OXA, indicating the production of ampicillinase. Compared to the controls, the MICs of ampicillin against SA^WT, SA^CIP, and SA^OXA were decreased from 4 to 0.5 ㎍/mL in the presence of CL, 16 to 4 ㎍/mL in the presence of RM, and 32 to 2 ㎍/mL in the presence of CL, EH, and RM, respectively. The medicinal plant extracts, OE, EJ, and CL, effectively inhibited the β-lactamase activities of SA^WT (78%), SA^CIP (57%), and SA^OXA (76%) when compared to the control. This results suggest that the medicinal plant extracts can be used as BLIs to control the antibiotic-resistant S. aureus.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.257-257
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• 2022

Late blight, caused by the hemibiotrophic oomycete pathogen Phytophthora infestans, has been the most important disease limiting potato production worldwide. P. infestans undergo major population shifts in agricultural systems via the successive emergence and migration of asexual lineages. The phenotypic and genotypic bases of these selective sweeps are largely unknown but management strategies need to adapt to reflect the changing pathogen population. Here, we used molecular markers to divide the 86 South Korea isolates into six clonal lineages: KR_1_A1, KR_2_A2, SIB-1, US-11, SIB-1 like, and KR-2 like. We documented the emergence of a new lineage, termed SIB-1 like, and KR-2 like, and their rapid replacement of other lineages to exceed 35% of the pathogen population across South Korea. Genome analyses of the Korean P. infestans populations revealed extensive genetic polymorphism, particularly in effector genes. Importantly, SIB-1 like isolates carry an intact Avr8 effector gene that triggers resistance in potato carrying the corresponding R immune receptor gene R8 cloned from Solarium demissum. These findings point toward a strategy for deploying genetic resistance to mitigate the impact of the SIB-1 like lineage and illustrate how pathogen population monitoring, combined with genome analysis, informs the management of devastating disease epidemics. Further study is being done on pathogenicity of the SIB-1 like isolates on cultivated potatoes and changes in expression patterns of disease effector genes within the SIB-1 like isolates

• 환경생물
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• 제40권4호
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• pp.464-476
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• 2022

가속화되는 기후변화로 인해 전 세계 각지의 연안에서 해조류 대발생(macroalgal bloom)이 빈번하게 일어나고 있다. 특히, 녹조류의 대량 증식으로 인한 녹조(파래) 대발생(green tide) 현상은 지역 경제뿐만 아니라 연안 생태계 환경에도 막대한 피해를 주고 있다. 우리나라의 경우 2000년대부터 제주도 동북부 해안을 중심으로 파래대발생이 연중 지속적으로 관찰되며, 최근에는 남해와 동해 일대에서도 국지적으로 관찰되고 있다. 파래대발생의 원인 종은 갈파래속(Chlorophyta; genus Ulva)으로 알려져 있으며, 기후변화의 영향으로 해수 온도의 상승과 담지하수 및 인근지역 오염수 배출로 인한 질소와 인의 대량 유입으로 인한 영양염류 증가가 주요 원인으로 추정되고 있다. 갈파래속은 환경변화에 의해 형태적 발현의 가소성이 높은 표현형 적응성(phenotypic plasticity) 때문에 형태적 종 동정은 거의 불가능하다. 갈파래류 종 판별을 위해서는 분자유전학적 분석이 수행되어야 하나 현재 분자데이터를 이용한 갈파래 종 분포, 군집구조와 같은 생태조사연구는 매우 미흡한 실정이다. 파래대발생 피해 저감을 위해서는 파래대발생 주요 종들을 분자계통학적 분석을 통하여 정확하게 파악하는 것이 우선이다. 선행 연구에서는 2015년 파래대발생을 일으키는 주요 종 파악을 위해 핵 DNA ITS와 엽록체 DNA tufA (chloroplast elongation factor Tu) 유전자를 이용하여 분자계통학적 분석을 수행하였으며, 종 동정에는 tufa 유전자가 더 정확한 결과를 나타냈다. 따라서 본 연구에서는 tufA 유전자를 이용해 2015~2020년 제주도 연안에서 파래대발생을 일으키는 주요 구성 갈파래 종의 군집구조 및 종 다양성을 파악하고 종 구성의 시간적 변이를 확인하고자 하였다. 본 연구에서는 온대와 아열대 해역에서 주로 생장하는 것으로 알려진 큰갈파래와 구멍갈파래 종이 파래대발생의 주요 구성 종임을 확인하였다. 구멍갈파래는 2015년(35.75%)에서 2020년(36.18%) 기간 상대빈도의 변화가 거의 없고 안정적으로 유지되었으나, 큰갈파래의 경우 2015년(20.77%)에 비해 2020년(36.84%) 빈도가 대략 16% 증가하였다. 이러한 결과는 기후변화와 연관된 평균 해수면 온도의 상승에 큰갈파래의 높은 성장률 및 적응력과 관련이 있을 수 있으며, 제주도의 갈파래 군집을 구성하는 종 수는 2015년에는 9종이었으나 2020년에는 7종으로 감소하는 것으로 나타났다. 또한, 유럽 원산지 외래종인 긴통갈파래와 굽은갈파래가 2015년과 2020년 모두 제주 연안에서 관찰되어 이 두 종에 대한 향후 지속적인 모니터링이 필요하다. 본 연구의 결과는 우리나라 연안에서 발생하는 파래대발생의 저감을 위해 주요 종인 갈파래속(genus Ulva)에 대한 분자유전학적 데이터에 대한 정보를 제공하고자 한다.

• Journal of Animal Science and Technology
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• 제48권2호
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• pp.143-150
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• 2006

본 연구는 현재 유전평가에 사용하는 모델보다 많은 장점을 지니고 있는 임의회귀 검정일 모형(Random regression test-day model)을 이용할 때 마지막 세대의 불완전한 검정기록이 유전능력에 어떤 영향을 주는지 알아보고자 실시하였다.이용된 재료는 유우군능력검정사업을 통하여 수집된 2000년 1월부터 2005년 6월까지의 825,157개의 초산의 검정일 자료를 이용하였으며, 유전모수와 종모우의 육종가 추정은 REMLF90, BLUPF90을 이용하였다.

• 한국산림과학회지
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• 제79권1호
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• pp.56-70
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• 1990

잣나무(Pinus koraiensis S. et Z.)의 풍매차대검정림(風媒次代檢定林)을 충북(忠北) 영동군(永同郡), 경기(京畿) 광주군(廣州郡) 및 가평군(加平郡)의 3개(個) 지역(地域)에 조성(造成)하고, 묘목(苗木)의 생존율(生存率)과 산지(山地) 5개년(個年) 동안(5년생(年生)-9년생(年生))의 수고(樹高) 및 근원경(根元徑) 생장(生長)을 조사(調査)하였다. 산지식재(山地植栽) 후(後) 묘목(苗木)의 생존율(生存率)과 생장(生長)은 가계(家系)와 식재지(植栽地)에 따라 큰 차(差)를 나타내었다. 생장(生長)의 변이(變異)를 나타내는 가장 큰 분산요인(分散要因)은 plot내(內)의 개체목(個體木) 간(間)에 있음을 알 수 있었으며 가계분산(家系分散)에 대한 Family ${\times}$ Site 상호작용(相互作用)의 분산비(分散比)는 수령(樹齡)이 증가함에 따라 현저히 감소하였다. 유전력(遺專力)은 지역(地域)과 수령(樹齡)에 따라 차(差)를 나타내었으나 Combined analysis에 의한 수고(樹高)의 가계유전력(家系遺傳力)($h_F{^2}=0.789-0.798$)은 높고 안정(安定)된 경향(傾向)을 보여주었다. 선발(選拔)에 의한 개량효과(改良效果)는 가계선발(家系選拔)과 가계내(家系內) 개체선발(個體選拔)을 동시(同時)에 실시(實施)하는 Combined selection에 의하는 것이 바람직한 것으로 여겨진다. 가계선발(家系選拔)의 경우, 5, 6년생(年生)에서의 간접선발(間接選拔)은 9 년생(年生)에서의 직접선발(直接選拔)에 비(比)하여 90% 이상(以上)의 상대효율(相對效率)을 얻을 수 있었으므로 조기선발(早期選拔)의 가능성(可能性)을 나타내었고, 5년생(年生)부터 9년생(年生)까지의 Age-age correlation을 구해본 결과 표현형(表現型) 및 유전상관(遺專相關) 모두 고도(高度)의 유의성(有意性)을 인정(認定)할 수 있었다.