• Title/Summary/Keyword: pathway extension

검색결과 46건 처리시간 0.036초

Biological Pathway Extension Using Microarray Gene Expression Data

  • Chung, Tae-Su;Kim, Ji-Hun;Kim, Kee-Won;Kim, Ju-Han
    • Genomics & Informatics
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    • 제6권4호
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    • pp.202-209
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    • 2008
  • Biological pathways are known as collections of knowledge of certain biological processes. Although knowledge about a pathway is quite significant to further analysis, it covers only tiny portion of genes that exists. In this paper, we suggest a model to extend each individual pathway using a microarray expression data based on the known knowledge about the pathway. We take the Rosetta compendium dataset to extend pathways of Saccharomyces cerevisiae obtained from KEGG (Kyoto Encyclopedia of genes and genomes) database. Before applying our model, we verify the underlying assumption that microarray data reflect the interactive knowledge from pathway, and we evaluate our scoring system by introducing performance function. In the last step, we validate proposed candidates with the help of another type of biological information. We introduced a pathway extending model using its intrinsic structure and microarray expression data. The model provides the suitable candidate genes for each single biological pathway to extend it.

농업인의 정보 수용경로 분석 및 정보수용 제고 방안 (Analysis of Information Adoption Pathways and Strategies of Raising Information Adoption of Farmers)

  • 최상호
    • 농촌계획
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    • 제15권1호
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    • pp.73-87
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    • 2009
  • This study analyzed the characteristics of diverse information adoption pathways per pathway of information composition category including 'information perception', 'information assessment', and 'information adoption' and examined information adoption characteristics per pattern. In addition, differences among agricultural researchers and farmers per information adoption stage were analyzed. According to these analyses, as for farmers' information adoption pathways, while the formal extension type and the situational reaction diffusion type used the direct pathway of 'information perception ${\rightarrow}$ information adoption,'the agriculturist connection type and the systematic approach type did not use the direct pathway of 'information perception ${\rightarrow}$ information adoption' but, instead, adopted information by moving from the 'information perception ${\rightarrow}$ information assessment' pathway to the 'information assessment ${\rightarrow}$ information adoption' pathway, with information assessment as the intermediation. In the case of farmers, information adoption was the highest in comparison with information assessment and information perception in all patterns whereas, in the case of agricultural researchers, the results were exactly opposite those of farmers. By suggesting an information adoption pathway appropriate to each pattern, this study sought to enhance information adoption.

ACTIVATION OF P38 MAP KINASE AND AP-1 DURING THE PROMOTION OF NEURITE EXTENSION OF PC-12 CELLS BY 15-DEOXY-$\Delta$12,14-PROSTAGLANDIN J2

  • Song, Y.S.;Oh. J.H.;Park, K.S.;Jung, K.M.;Lee, M.K.;Jung, H.K.;Jung, S.Y.;Hong, J.T.
    • 한국독성학회:학술대회논문집
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    • 한국독성학회 2002년도 Current Trends in Toxicological Sciences
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    • pp.110-110
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    • 2002
  • 15-Deoxy-$\Delta$12, 14-prostaglandin J2 (15-deoxy-PGJ2), a naturally occurring ligand activates the peroxisome proliferator-activated receptor-$\gamma$(PPAR-$\gamma$). It was known to have promoting ability of nerve growth factor(NGF)-induced neurite extension. However, it is not clear yet as to what signaling pathway is involved in its promoting ability of neurite extension.(omitted)

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시각회로가 고유수용성신경근촉진법 치료에 미치는 효과 (Effect of Optic pathway on the Proprioceptive Neuromuscular Facilitation)

  • 송명수;윤희종;김태열;이경옥
    • 대한물리치료과학회지
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    • 제5권4호
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    • pp.837-843
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    • 1998
  • The purpose of this study was to examine the effect of optic pathway on human body during Proprioceptive Neuromuscular Facilitation(PNF) treatment. Specifically, it's intened to find out through electromyography(EMG), what kind on change occurred in a patient's muscle when the patient saw the motor direction or when the patient didn't. A pilot experiment Was made over the sophomores of Mokpo Science College the following findings were given; As an EMG was taken over three of muscles that worked during Flexion-Adduction-Ext. Rot., one of the PNF pattern, a patient showed relatively stronger muscle power while watching the movement with his eyes open than the same patient did with his eyes closed, and the disparity between the two cases Was statistically significant(P<0.05). In the pattern of Extension-Abduction-Int.Rot., a patient also showed relatively stronger muscle power while watching the movement than the same patient did without watching it, and the disparity between the two cases also were significant(P<0.05). As seen above, the effect of motor treatment, among physiotherapy methods seemed to be greater if a patient watched the motor direction during treatment, because it gave a stimulus to proprioception.

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Autophagy-Is it a preferred route for lifespan extension?

  • Dwivedi, Meenakshi;Ahnn, Joo-Hong
    • BMB Reports
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    • 제42권2호
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    • pp.65-71
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    • 2009
  • Autophagy, which is a process of self eating, has gained interest in the past decade due to its both beneficial and controversial roles in various biological phenomena. The discovery of autophagy genes (ATG) in yeast has led to focused research designed to elucidate the mechanism and regulation of this process. The role of autophagy in a variety of biological phenomena, including human disease, is still the subject of debate. However, recent findings suggest that autophagy is a highly regulated process with both beneficial and negative effects. Indeed, studies conducted using various model organisms have demonstrated that increased autophagy leads to an extended lifespan. Despite these findings, it is still unknown if all pathways leading to extended lifespan converge at the process of autophagy or not. Here, an overview of modern developments related to the process of autophagy, its regulation and the molecular machinery involved is presented. In addition, this review focuses on one of the beneficial aspects of autophagy, its role in lifespan regulation.

15-Deoxy-$PGJ_2$ Stimulates Neuronal Differentiation of Embryonic Midbrain Cells by Up-regulation of PPAR-gamma Activity via the JNK-dependent Pathway

  • Park, Ki-Sook;Lee, Sang-Min;Lee, Rhee-Da;Han, Soon-Young;Park, Kui-Lae;Yang, Ki-Hwa;Song, Yuen-Sook;Moon, Dong-Chuel;Song, Suk-Gil
    • 대한약학회:학술대회논문집
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    • 대한약학회 2003년도 Proceedings of the Convention of the Pharmaceutical Society of Korea Vol.1
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    • pp.200.2-201
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    • 2003
  • The effect of 15-deoxy-PGJ$_2$ on the differentiation of embryonic midbrain cells into dopaminergic neuronal cells, and the relationship between cell differentiation with activation of PPAR-yand possible signal pathway were investigated, 15-Deoxy-PGJ$_2$ increased neurite extension, a typical characteristics of the differentiation of embryonic midbrain cells isolated from 12 day's rat embryos in a dose-dependent manner. (omitted)

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한지형 마늘의 인경 발육 과정에서 내생 지베렐린류의 함량변화 (Changes in Endogenous Gibberellin Contents during Bulb Development Period in the Cold-type Cultivar of Garlic (Allium sativum L.) of Korea)

  • 손은영;김윤하;김병수;서동환;이현숙;이인중
    • 원예과학기술지
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    • 제28권5호
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    • pp.750-756
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    • 2010
  • 마늘의 안정적 수량 확보와 품질향상 방안을 모색하고자 마늘의 인경 비대에 관여하는 요인을 구명하기 위해 본 연구를 수행하였다. 한지형 마늘의 인편 분화기에서 인편 비대 최성기까지 식물체내 호르몬 함량의 변화를 조사하여 생육 특성과의 연관성을 구명한 결과는 다음과 같다. 마늘 식물체(엽신과 엽초)의 GA 함량을 GC-MS로 동정한 결과 마늘 식물체에서 18종 이상의 GA를 확인하였다. GA 함량은 마늘에 고등식물체에서 주로 존재하는 두 생합성 경로가 모두 존재하는 것으로 확인되었으며, 생리활성 $GA_4$를($7.25ng{\cdot}g^{-1}$ D.W.) 생합성 하는 non C-13 hydroxylation pathway(NCH)가 $GA_1$을($2.97ng{\cdot}g^{-1}$ D.W.) 생합성 하는 early C-13 hydroxylation pathway (ECH) 보다 우세한 것으로 조사되었다. 한지형 의성마늘 인경 분화 및 비대 시 식물체내 호르몬 변화를 조사한 결과 total GA 함량은 인편 분화기부터 비대개 시기까지 점진적으로 증가하다가 인경이 비대되는 동안 점차 감소하였다. 생리활성 GA인 $GA_4$$GA_1$의 함량은 총 GA 함량과 같은 경향으로 변화하여 인경 비대와 밀접한 연관이 있는 것으로 나타났다. 마늘 생장 양상과 엽초의 호르몬 변화 양상은 유사한 경향을 보여 엽초의 호르몬 변화가 마늘 생장과 밀접한 연관이 있음을 보여주었다.

농촌 청소년의 희망과 문제행동, 성적 및 학업지연행동과의 관계 (Levels of Hope and their Relationship with Problem Behavior, Academic Records and Procrastination among Rural Adolescents)

  • 이창식
    • 농촌지도와개발
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    • 제18권4호
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    • pp.879-902
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    • 2011
  • This study was conducted to investigate the levels of hope and their relationship with problem behavior, academic records and procrastination among rural adolescents. The participants were 579 rural middle and high school students from three counties. The major results of the study were as follows. First, pathway and agency thinking of rural adolescents were negatively correlated with depression and anxiety, and were positively correlated with academic records and procrastination. But only agency thinking of rural adolescents were negatively correlated with delinquency among problem behaviors. Second, as a result of multivariate analysis of variance, groups of high hope of rural adolescents were lower in depression and anxiety than groups of low hope, but were higher in academic records and procrastination.

Surgery for a Case of Three-Compartment Trigeminal Schwannoma : Technical Aspects

  • Chung, Jong-Chul;Chung, Seung-Young;Kim, Seong-Min;Park, Moon-Sun
    • Journal of Korean Neurosurgical Society
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    • 제48권4호
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    • pp.383-387
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    • 2010
  • Complete removal of three-compartment trigeminal schwannomas is a challenge to neurosurgeons. To expand exposure of each compartment, the combination and modification of skull base approaches are necessary. The 61-year-old woman was admitted with chronic headache. Preoperative magnetic resonance imaging showed $47{\times}50{\times}40\;mm$-sized tumor originating primarily in the middle cranial fossa extended to the posterior and the infratemporal fossa. We performed operation in five stage; 1. Zygomatic osteotomy, 2. Inferior temporal fossa plate removal and foramen ovale opening, 3. Cavernous sinus opening, 4. Tailored anterior petrosectomy, 5. Meckel's cave opening. Combination of skull base surgery should be concerned according to the patient. In this study, extradural basal extension with zygomatic osteotomy, interdural posterior extension with tailored anterior petrosectomy, and intracavemous exploration are reasonable options for remodeling three-compartment lesion into a single compartment. Tailoring of bone resection and exploring through natural pathway between meningeal layers accomplish single-stage operation for complete removal of tumors.

Proximate Chemical Composition and Endogenous Gibberellins of Chufa (Cyperus esculentus L.) in Upland and Wetland

  • Kim, Sang-Kuk;Choi, Hong-Jib;Kang, Sang-Mo;Lee, In-Jung;Kim, Hak-Yoon
    • 한국작물학회지
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    • 제56권1호
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    • pp.94-98
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    • 2011
  • Proximate chemical components (protein, oil, carbohydrate, ash, fiber, and starch) were determined from tubers grown in upland and wetland conditions. The contents of crude protein, oil, carbohydrate, and starch were higher in upland condition than in wetland condition. Eight gibberellins were commonly identified and quantified in leaves and tuber of chufa grown in wetland and upland field during growing season. Gibberellin content was always higher specifically in the leaves and tubers grown in wetland condition than in those grown in upland condition. The current knowledge of gibberellin biosynthesis suggests that the two endogenous bio-active gibberellins both $GA_1$ and $GA_4$ are differently metabolized according to cultural conditions. Major gibberellin biosynthesis route is ascertained dominantly the non C-13 hydroxylation pathway leading $GA_4$ in chufa plants.