• Title/Summary/Keyword: pathway extension

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Biological Pathway Extension Using Microarray Gene Expression Data

  • Chung, Tae-Su;Kim, Ji-Hun;Kim, Kee-Won;Kim, Ju-Han
    • Genomics & Informatics
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    • v.6 no.4
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    • pp.202-209
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    • 2008
  • Biological pathways are known as collections of knowledge of certain biological processes. Although knowledge about a pathway is quite significant to further analysis, it covers only tiny portion of genes that exists. In this paper, we suggest a model to extend each individual pathway using a microarray expression data based on the known knowledge about the pathway. We take the Rosetta compendium dataset to extend pathways of Saccharomyces cerevisiae obtained from KEGG (Kyoto Encyclopedia of genes and genomes) database. Before applying our model, we verify the underlying assumption that microarray data reflect the interactive knowledge from pathway, and we evaluate our scoring system by introducing performance function. In the last step, we validate proposed candidates with the help of another type of biological information. We introduced a pathway extending model using its intrinsic structure and microarray expression data. The model provides the suitable candidate genes for each single biological pathway to extend it.

Analysis of Information Adoption Pathways and Strategies of Raising Information Adoption of Farmers (농업인의 정보 수용경로 분석 및 정보수용 제고 방안)

  • Choi, Sang-Ho
    • Journal of Korean Society of Rural Planning
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    • v.15 no.1
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    • pp.73-87
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    • 2009
  • This study analyzed the characteristics of diverse information adoption pathways per pathway of information composition category including 'information perception', 'information assessment', and 'information adoption' and examined information adoption characteristics per pattern. In addition, differences among agricultural researchers and farmers per information adoption stage were analyzed. According to these analyses, as for farmers' information adoption pathways, while the formal extension type and the situational reaction diffusion type used the direct pathway of 'information perception ${\rightarrow}$ information adoption,'the agriculturist connection type and the systematic approach type did not use the direct pathway of 'information perception ${\rightarrow}$ information adoption' but, instead, adopted information by moving from the 'information perception ${\rightarrow}$ information assessment' pathway to the 'information assessment ${\rightarrow}$ information adoption' pathway, with information assessment as the intermediation. In the case of farmers, information adoption was the highest in comparison with information assessment and information perception in all patterns whereas, in the case of agricultural researchers, the results were exactly opposite those of farmers. By suggesting an information adoption pathway appropriate to each pattern, this study sought to enhance information adoption.

ACTIVATION OF P38 MAP KINASE AND AP-1 DURING THE PROMOTION OF NEURITE EXTENSION OF PC-12 CELLS BY 15-DEOXY-$\Delta$12,14-PROSTAGLANDIN J2

  • Song, Y.S.;Oh. J.H.;Park, K.S.;Jung, K.M.;Lee, M.K.;Jung, H.K.;Jung, S.Y.;Hong, J.T.
    • Proceedings of the Korean Society of Toxicology Conference
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    • 2002.05a
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    • pp.110-110
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    • 2002
  • 15-Deoxy-$\Delta$12, 14-prostaglandin J2 (15-deoxy-PGJ2), a naturally occurring ligand activates the peroxisome proliferator-activated receptor-$\gamma$(PPAR-$\gamma$). It was known to have promoting ability of nerve growth factor(NGF)-induced neurite extension. However, it is not clear yet as to what signaling pathway is involved in its promoting ability of neurite extension.(omitted)

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Effect of Optic pathway on the Proprioceptive Neuromuscular Facilitation (시각회로가 고유수용성신경근촉진법 치료에 미치는 효과)

  • Song, Myung-Soo;Yoon, Hee-Jong;Kim, Tae-Youl;Lee, Kyung-Ok
    • Journal of Korean Physical Therapy Science
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    • v.5 no.4
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    • pp.837-843
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    • 1998
  • The purpose of this study was to examine the effect of optic pathway on human body during Proprioceptive Neuromuscular Facilitation(PNF) treatment. Specifically, it's intened to find out through electromyography(EMG), what kind on change occurred in a patient's muscle when the patient saw the motor direction or when the patient didn't. A pilot experiment Was made over the sophomores of Mokpo Science College the following findings were given; As an EMG was taken over three of muscles that worked during Flexion-Adduction-Ext. Rot., one of the PNF pattern, a patient showed relatively stronger muscle power while watching the movement with his eyes open than the same patient did with his eyes closed, and the disparity between the two cases Was statistically significant(P<0.05). In the pattern of Extension-Abduction-Int.Rot., a patient also showed relatively stronger muscle power while watching the movement than the same patient did without watching it, and the disparity between the two cases also were significant(P<0.05). As seen above, the effect of motor treatment, among physiotherapy methods seemed to be greater if a patient watched the motor direction during treatment, because it gave a stimulus to proprioception.

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Autophagy-Is it a preferred route for lifespan extension?

  • Dwivedi, Meenakshi;Ahnn, Joo-Hong
    • BMB Reports
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    • v.42 no.2
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    • pp.65-71
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    • 2009
  • Autophagy, which is a process of self eating, has gained interest in the past decade due to its both beneficial and controversial roles in various biological phenomena. The discovery of autophagy genes (ATG) in yeast has led to focused research designed to elucidate the mechanism and regulation of this process. The role of autophagy in a variety of biological phenomena, including human disease, is still the subject of debate. However, recent findings suggest that autophagy is a highly regulated process with both beneficial and negative effects. Indeed, studies conducted using various model organisms have demonstrated that increased autophagy leads to an extended lifespan. Despite these findings, it is still unknown if all pathways leading to extended lifespan converge at the process of autophagy or not. Here, an overview of modern developments related to the process of autophagy, its regulation and the molecular machinery involved is presented. In addition, this review focuses on one of the beneficial aspects of autophagy, its role in lifespan regulation.

15-Deoxy-$PGJ_2$ Stimulates Neuronal Differentiation of Embryonic Midbrain Cells by Up-regulation of PPAR-gamma Activity via the JNK-dependent Pathway

  • Park, Ki-Sook;Lee, Sang-Min;Lee, Rhee-Da;Han, Soon-Young;Park, Kui-Lae;Yang, Ki-Hwa;Song, Yuen-Sook;Moon, Dong-Chuel;Song, Suk-Gil
    • Proceedings of the PSK Conference
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    • 2003.04a
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    • pp.200.2-201
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    • 2003
  • The effect of 15-deoxy-PGJ$_2$ on the differentiation of embryonic midbrain cells into dopaminergic neuronal cells, and the relationship between cell differentiation with activation of PPAR-yand possible signal pathway were investigated, 15-Deoxy-PGJ$_2$ increased neurite extension, a typical characteristics of the differentiation of embryonic midbrain cells isolated from 12 day's rat embryos in a dose-dependent manner. (omitted)

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Changes in Endogenous Gibberellin Contents during Bulb Development Period in the Cold-type Cultivar of Garlic (Allium sativum L.) of Korea (한지형 마늘의 인경 발육 과정에서 내생 지베렐린류의 함량변화)

  • Sohn, Eun-Young;Kim, Yoon-Ha;Kim, Byung-Su;Seo, Dong-Hwan;Lee, Hyun-Suk;Lee, In-Jung
    • Horticultural Science & Technology
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    • v.28 no.5
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    • pp.750-756
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    • 2010
  • This study was performed to investigate the role of phytohormones in the bulbing of garlic in order to assess the yield and quality. The effect on endogenous plant hormones such as gibberellin (GA) content was also examined during growth stage i.e. clove differentiation to bulbing in garlic. More than 18 gibberellins in garlic were identified with extensive gas chromatograph-mass spectrometry-selected ion monitoring (GC-MS-SIM) quantitative analysis. The results showed that GAs were biosynthesized by both non C-13 hydroxylation pathway (NCH) and early C-13 hydroxylation pathway (ECH) in garlic plant. It was also revealed that NCH pathway leading to synthesis of bioactive $GA_4$ was the more prominent GA biosynthesis pathway than ECH pathway in which bioactive $GA_1$ was synthesized. Total GAs level was gradually increased from clove differentiation to bulbing and later decreased, which portrays the active role of GA in differentiation. The biosynthesis ratio of bioactive $GA_4$ and $GA_1$ concentration was similar to that of total GAs content, which was closely related with bulb development in garlic.

Levels of Hope and their Relationship with Problem Behavior, Academic Records and Procrastination among Rural Adolescents (농촌 청소년의 희망과 문제행동, 성적 및 학업지연행동과의 관계)

  • Lee, Chang-Seek
    • Journal of Agricultural Extension & Community Development
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    • v.18 no.4
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    • pp.879-902
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    • 2011
  • This study was conducted to investigate the levels of hope and their relationship with problem behavior, academic records and procrastination among rural adolescents. The participants were 579 rural middle and high school students from three counties. The major results of the study were as follows. First, pathway and agency thinking of rural adolescents were negatively correlated with depression and anxiety, and were positively correlated with academic records and procrastination. But only agency thinking of rural adolescents were negatively correlated with delinquency among problem behaviors. Second, as a result of multivariate analysis of variance, groups of high hope of rural adolescents were lower in depression and anxiety than groups of low hope, but were higher in academic records and procrastination.

Surgery for a Case of Three-Compartment Trigeminal Schwannoma : Technical Aspects

  • Chung, Jong-Chul;Chung, Seung-Young;Kim, Seong-Min;Park, Moon-Sun
    • Journal of Korean Neurosurgical Society
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    • v.48 no.4
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    • pp.383-387
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    • 2010
  • Complete removal of three-compartment trigeminal schwannomas is a challenge to neurosurgeons. To expand exposure of each compartment, the combination and modification of skull base approaches are necessary. The 61-year-old woman was admitted with chronic headache. Preoperative magnetic resonance imaging showed $47{\times}50{\times}40\;mm$-sized tumor originating primarily in the middle cranial fossa extended to the posterior and the infratemporal fossa. We performed operation in five stage; 1. Zygomatic osteotomy, 2. Inferior temporal fossa plate removal and foramen ovale opening, 3. Cavernous sinus opening, 4. Tailored anterior petrosectomy, 5. Meckel's cave opening. Combination of skull base surgery should be concerned according to the patient. In this study, extradural basal extension with zygomatic osteotomy, interdural posterior extension with tailored anterior petrosectomy, and intracavemous exploration are reasonable options for remodeling three-compartment lesion into a single compartment. Tailoring of bone resection and exploring through natural pathway between meningeal layers accomplish single-stage operation for complete removal of tumors.

Proximate Chemical Composition and Endogenous Gibberellins of Chufa (Cyperus esculentus L.) in Upland and Wetland

  • Kim, Sang-Kuk;Choi, Hong-Jib;Kang, Sang-Mo;Lee, In-Jung;Kim, Hak-Yoon
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.56 no.1
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    • pp.94-98
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    • 2011
  • Proximate chemical components (protein, oil, carbohydrate, ash, fiber, and starch) were determined from tubers grown in upland and wetland conditions. The contents of crude protein, oil, carbohydrate, and starch were higher in upland condition than in wetland condition. Eight gibberellins were commonly identified and quantified in leaves and tuber of chufa grown in wetland and upland field during growing season. Gibberellin content was always higher specifically in the leaves and tubers grown in wetland condition than in those grown in upland condition. The current knowledge of gibberellin biosynthesis suggests that the two endogenous bio-active gibberellins both $GA_1$ and $GA_4$ are differently metabolized according to cultural conditions. Major gibberellin biosynthesis route is ascertained dominantly the non C-13 hydroxylation pathway leading $GA_4$ in chufa plants.