• Title/Summary/Keyword: partial sequence

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Analysis of Expressed Sequence Tags generated from Uroctea lesserti Schenkel(Araneal)

  • Park, Kwang-Ho;Hong, Sun-Mee;Hwang, Jae-Sam;Goo, Tae-Won;Yun, Eun-Young;Kim, Nam-Soon;Kang, Seok-Woo
    • Proceedings of the Korean Society of Sericultural Science Conference
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    • 2003.10a
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    • pp.141-142
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    • 2003
  • Partial cDNA sequencing to generate expressed sequence tags (ESTs) is being used at present for the fast and efficient obtainment of a detailed profile of genes expressed in various tissues, cell types, or developmental stages. We describe here the construction, DNA sequencing and sequence profiles of cDNA library from Uroctea lesserti. (omitted)

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Morphological and Genetic Characterization of Penicillium spp. associated with post - harvest decay of fruits. (oral)

  • Oh, S.Y.;Yu, S.H.
    • Proceedings of the Korean Society of Plant Pathology Conference
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    • 2003.10a
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    • pp.115.1-115
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    • 2003
  • Post-harvest decay, caused by Penicillium spp. is a serious problem of fruits worldwide. Morphological characteristics and molecular markers were used to characterize 22 Penicillium isolates from apples, 18 isolates from pears, 60 from oranges and 18 from grapes and 23reference isolates representing related Penicillium spp. to assess their diversity and resolve their taxonomy. Based on morphological and physiological characteristics, the isolates were grouped as identical or very similar to P. digitatum, P. italicum, P. ulaiense or very similar to P. crustosum, P. expansum, P. solitum and unidentified Penicillium spp. Based on sequence comparisons of ITS region, variable site were presented within and among the species, but there variation were not correlated with the species. Cluster analyses of AP-PCR fragment patterns using UP and L45 primer and the -tubulin gene sequence, the Penicillium species were segregated into distinct groups. Particularly. the -tubulin partial sequence data provided support for species concepts based on morphological and physiological characteristics.

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Isolation and Characterization of cDNA Encoding Pyridoxal Kinase from Ovine Liver

  • Lee, Hyun-Shik;Choi, Soo-Young;Kwon, Oh-Shin
    • BMB Reports
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    • v.32 no.5
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    • pp.502-505
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    • 1999
  • cDNA fragments of ovine liver pyridoxal kinase were amplified by PCR using degenerate oligonucleotide primers derived from partial amino acids sequences of the enzyme. Using PCR products as probes, several overlapping cDNA clones were isolated independently from an ovine liver and a human brain cDNA library. The largest cDNA clone for each was selected for sequence analysis. The ovine liver cDNA encodes a polypeptide of 297 amino acid residues with Mr of 32,925, whereas the human clone is comprised of an open reading frame encoding 312 amino acid residues with Mr of 35,102. The deduced sequence of the human brain enzyme is completely identical to that of human testes cDNA recently reported (Hanna et al., 1997). The ovine enzymes have approximately 77% sequence identity with the human enzyme although the two sequences are completely different in the N-terminus comprising 32 residues. This result suggests that pyridoxal kinase is highly homologous in mammalian species.

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A New PAPR Reduction Method in the OFDM System Using GD and Radix-2 Dif IFFT (OFDM 시스템에서의 GD방식과 Radix-2 DIF IFFT를 이용한 효과적인 PAPR 감소 방식)

  • Lee, Sun-Ho;Lee, Hae-Kie;Kim, Sung-Soo
    • Proceedings of the KIEE Conference
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    • 2007.11c
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    • pp.70-73
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    • 2007
  • Many methods have been developed to overcome the PAPR(peak-to-average power ratio) problem. Selective mapping(SLM) partial transmit sequence(PTS), subblock phase weighting(SPW) and gradient descent(GD) are used widely to reduce the PAPR. In this paper, we present a effective PAPR reduction method, decrease the calculation through Radix-2 DIF IFFT procedure and GD method. and can transmit selecting data sequence that satisfy threshold value as one part of proposed method, in case satisfy fixed threshold value, or transmit selecting data sequence with the lower papr operating remained part for performance improvement.

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Molecular Identification of the Fish 4-Aminobutyrate Aminotransferase from Flounder, Paralichthys olivaceus

  • Sung Bo Kyung;Kim Young Tae
    • Fisheries and Aquatic Sciences
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    • v.4 no.1
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    • pp.25-31
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    • 2001
  • 4-Aminobutyrate aminotransferase plays an essential role in the 4-aminobutyric acid shunt, converting 4-aminobutyrate to succinic semi aldehyde. We isolated and sequenced' a fish cDNA fragment that encodes 4-aminobutyrate aminotransferase. A brain cDNA library from flounder (Paralichthys olivaceus) was constructed using the ZAP- III XR vector and screened for the fish 4-aminobutyrate aminotransferase gene using a probe derived from the conserved sequences of known mammalian 4-aminobutyrate aminotransferases. A partial cDNA for 4-aminobutyrate aminotransferase was cloned and found to be 700 bp in length corresponding to 66 amino acids. Nucleotide sequence of the clone was aligned with NCBI (National Center for Biotechnology Information) DNA sequence data base. The result showed high sequence identity with previously reported mammalian 4-aminobutyrate aminotransferases. The trans­criptional level of flounder 4-aminobutyrate aminotransferase was detected with the presence of mRNA at different flounder tissues by reverse transcription-polymerase chain reaction (RT-PCR). The expression of flounder 4-aminobutyrate aminotransferase was also tested and detected from the flounder tissues of the brain, liver, kidney and pancreas.

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Attack using Phase Shifts of Shrunken Sequence (수축수열의 위상이동차 공격법)

  • Choi, Un-Sook;Cho, Sung-Jin;Hwang, Yoon-Hee;Kim, Han-Doo
    • The Journal of the Korea institute of electronic communication sciences
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    • v.6 no.1
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    • pp.97-104
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    • 2011
  • Pseudo-random sequences with high linear complexity and low correlation function values are widely used in communication and cryptology. In this paper, we study the properties of interleaved sequences generated by shrinking generator. And we give a method for obtaining the shrunken sequence from a partial description of the shrunken sequence by using the phase shifting of PN sequences generated by shrinking generator.

A Study of Parameter Estimation for First Order System with Dead Time (지연요소를 수반하는 일차계통의 패러미터 추정에 관한 연구)

  • Joo Shik Ha
    • 전기의세계
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    • v.18 no.1
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    • pp.15-23
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    • 1969
  • A lot of recent researches have shown that a Pseudo Random Binary Signal is a quite effective test signal to measure the impulse response of a plant. Generally speaking, however, such a response itself is not satisfactory to determine the appropriate control parameters or control inputs. Here, the author intends to estimate the unknown parameters of the First Order Plant with Dead Time by means of correlation method using M-sequence signal. The time constant T and the dead time L of the plant are eatimated with one tracking loop by automatically adjusting delay time .tau. of M-sequence signal according to variations of T and L. In this paper, a three level M-sequence signal is used as a test signal in order to avoid troublesome operations to calculate partial derivatives of a given performance index with respect to the parameters which are usually required in the Model Method. Several experiments with analogue computer using low pass filters as averaging circuits showed good results as expected.

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A Newly Recorded Sea Star of the Genus Luidia (Asteroidea: Paxillosida: Luidiidae) from the Korea Strait, Korea

  • Kim, Donghwan;Kim, Minkyung;Shin, Sook
    • Animal Systematics, Evolution and Diversity
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    • v.33 no.2
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    • pp.131-135
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    • 2017
  • Asteroid specimens of the genus Luidia were collected at a depth of 95-100 m in the Korea Strait by bottom trawling in April 2016. The specimens were identified as Luidia avicularia Fisher, 1913 (Luidiidae: Paxillosida) based on morphological characteristics and molecular phylogenetic analyses, and the species is new to the Korean fauna. A 648-bp partial nucleotide sequence of mitochondrial cytochrome c oxidase I (mt-COI) gene was obtained from Korea, and then was compared to sequences of related species stored in GenBank using molecular phylogenetic analyses. No sequence differences were detected between the L. avicularia mt-COI gene sequences from Korea and China, and the species described in this report was clearly distinct from L. maculata, which was previously reported in Korean fauna. Three Luidia species have been reported in Korea.

Morphological and Multigene Sequence Characteristics of Talaromyces variabilis Isolated from Soil in Korea

  • Adhikari, Mahesh;Kim, Sang Woo;Lee, Hyang Burm;Lee, Youn Su
    • The Korean Journal of Mycology
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    • v.49 no.1
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    • pp.11-19
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    • 2021
  • In 2017, Talaromyces variabilis was isolated during a survey of fungal diversity in field soils in Korea. This isolate was described based on its morphological and molecular characteristics and it was identified molecularly using the partial 18S-ITS1-5.8S-ITS2-28S rDNA region and calmodulin (CaM)-encoding gene sequence data. Thus, this study reported morphological and multigene sequence characterization of T. variabilis.

Restriction Analyses of PCR Amplified Partial SSU Ribosomal DNA to Distinguish Arbuscular Mycorrhizal Fungi from Other Fungi Colonizing Plant Roots

  • Lee, Jae-Koo;Tae, Moon-Sung;Eom, Ahn-Heum;Lee, Sang-Sun
    • Mycobiology
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    • v.31 no.2
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    • pp.68-73
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    • 2003
  • Roots of Glycine max and Miscanthus sinensis and soil samples were collected from various field sites at Goesan, Chungbuk in Korea. Microscopic observations of the roots indicated high colonization rates of both arbuscular mycorrhizal fungi(AMF) and other fungi. The partial small subunit of ribosomal DNA genes were amplified with the genomic DNA extracted from their roots by nested polymerase chain reaction(PCR) with universal primer NS1 and fungal specific primers AML Restriction fragment length polymorphism(RFLP) was analyzed using the combinations of three restriction enzymes, HinfI, AluI and AsuC21. Nucleotides sequence analysis revealed that ten sequences from Miscanthus sinensis and one sequence from Glycine max were close to those of arbuscular mycorrhizal fungi. Also, 33% of total clones amplified with NS31-AM1 primers from M. sinensis and 97% from G. max were close to Fusarium oxysporum or other pathogenic fungi, and they were successfully distinguished from AME Results suggested that these techniques could help to distinguish arbuscular mycorrhizal fungi from root pathogenic fungi in the plant roots. Especially, DNA amplified by these primers showed distinct polymorphisms between AMF and plant pathogenic species of Fusarium when digested with AsuC21.