• Title/Summary/Keyword: pairs set

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DNA fingerprinting analysis for soybean (Glycine max) varieties in Korea using a core set of microsatellite marker (핵심 Microsatellite 마커를 이용한 한국 콩 품종에 대한 Fingerprinting 분석)

  • Kwon, Yong-Sham
    • Journal of Plant Biotechnology
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    • v.43 no.4
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    • pp.457-465
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    • 2016
  • Microsatellites are one of the most suitable markers for identification of variety, as they have the capability to discriminate between narrow genetic variations. The polymorphism level between 120 microsatellite primer pairs and 148 soybean varieties was investigated through the fluorescence based automatic detection system. A set of 16 primer pairs showed highly reproducible polymorphism in these varieties. A total of 204 alleles were detected using the 16 microsatellite markers. The number of alleles per locus ranged from 6 to 28, with an average of 12.75 alleles per locus. The average polymorphism information content (PIC) was 0.86, ranging from 0.75 to 0.95. The unweighted pair group method using the arithmetic averages (UPGMA) cluster analysis for 148 varieties were divided into five distinctive groups, reflecting the varietal types and pedigree information. All the varieties were perfectly discriminated by marker genotypes. These markers may be useful to complement a morphological assessment of candidate varieties in the DUS (distinctness, uniformity and stability) test, intervening of seed disputes relating to variety authentication, and testing of genetic purity in soybean varieties.

A Study on the Semiautomatic Construction of Domain-Specific Relation Extraction Datasets from Biomedical Abstracts - Mainly Focusing on a Genic Interaction Dataset in Alzheimer's Disease Domain - (바이오 분야 학술 문헌에서의 분야별 관계 추출 데이터셋 반자동 구축에 관한 연구 - 알츠하이머병 유관 유전자 간 상호 작용 중심으로 -)

  • Choi, Sung-Pil;Yoo, Suk-Jong;Cho, Hyun-Yang
    • Journal of Korean Library and Information Science Society
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    • v.47 no.4
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    • pp.289-307
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    • 2016
  • This paper introduces a software system and process model for constructing domain-specific relation extraction datasets semi-automatically. The system uses a set of terms such as genes, proteins diseases and so forth as inputs and then by exploiting massive biological interaction database, generates a set of term pairs which are utilized as queries for retrieving sentences containing the pairs from scientific databases. To assess the usefulness of the proposed system, this paper applies it into constructing a genic interaction dataset related to Alzheimer's disease domain, which extracts 3,510 interaction-related sentences by using 140 gene names in the area. In conclusion, the resulting outputs of the case study performed in this paper indicate the fact that the system and process could highly boost the efficiency of the dataset construction in various subfields of biomedical research.

An Analysis on Understanding of Gifted Students in Elementary Mathematics about Situations and Concepts of Multiplication (초등수학영재의 곱셈 상황에 따른 개념 이해 분석)

  • Kim, Young A;Kim, Sung Joon
    • Journal of Elementary Mathematics Education in Korea
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    • v.20 no.2
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    • pp.283-309
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    • 2016
  • The purpose of this study is to investigate gifted students in elementary mathematics how they understand of situations involving multiplication and concepts of multiplication. For this purpose, first, this study analyzed the teacher's guidebooks about introducing the concept of multiplication in elementary school. Second, we analyzed multiplication problems that gifted students posed. Third, we interviewed gifted students to research how they understand the concepts of multiplication. The result of this study can be summarized as follows: First, the concept of multiplication was introduced by repeated addition and times idea in elementary school. Since the 2007 revised curriculum, it was introduced based on times idea. Second, gifted students mainly posed situations of repeated addition. Also many gifted students understand the multiplication as only repeated addition and have poor understanding about times idea and pairs set.

An Analytical Investigation for Nash Equilibriums of Generation Markets

  • Kim Jin-Ho;Won Jong-Ryul;Park Jong-Bae
    • KIEE International Transactions on Power Engineering
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    • v.5A no.1
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    • pp.85-92
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    • 2005
  • In this paper, Nash equilibriums of generation markets are investigated using a game theory application for simplified competitive electricity markets. We analyze the characteristics of equilibrium states in N-company spot markets modeled by uniform pricing auctions and propose a new method for obtaining Nash equilibriums of the auction. We assume that spot markets are operated as uniform pricing auctions and that each generation company submits its bids into the auction in the form of a seal-bid. Depending on the bids of generation companies, market demands are allocated to each company accordingly. The uniform pricing auction in this analysis can be formulated as a non-cooperative and static game in which generation companies correspond to players of the game. The coefficient of the bidding function of company-n is the strategy of player-n (company-n) and the payoff of player-n is defined as its profit from the uniform price auction. The solution of this game can be obtained using the concept of the non-cooperative equilibrium originating from the Nash idea. Based on the so called residual demand curve, we can derive the best response function of each generation company in the uniform pricing auction with N companies, analytically. Finally, we present an efficient means to obtain all the possible equilibrium set pairs and to examine their feasibilities as Nash equilibriums. A simple numerical example with three generation companies is demonstrated to illustrate the basic idea of the proposed methodology. From this, we can see the applicability of the proposed method to the real-world problem, even though further future analysis is required.

Development of Sequence-Based DNA Markers for Evaluation of Phylogenetic Relationships in Korean Watermelon Varieties

  • Lee, Hee-Jeong;Cho, Hwa-Jin;Lee, Kyung-Ah;Lee, Min-Seon;Shin, Yoon-Seob;Harn, Chee-Hark;Yang, Seung-Gyun;Nahm, Seok-Hyeon
    • Journal of Crop Science and Biotechnology
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    • v.10 no.2
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    • pp.98-105
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    • 2007
  • Phylogenetic relationships in Korean watermelons were evaluated by genetic similarity coefficients using 15 SSR(simple sequence repeat), 14 SCAR(sequence characterized amplified region) and 14 CAPS(sequence characterized amplified region) markers. The SSR markers were selected from previously reported melon and watermelon SSRs through testing polymorphisms within a set of commercial $F_1$ varieties. The SCAR and CAPS markers were developed from polymorphic AFLP(amplified fragment length polymorphism) markers between inbred lines 'BN4001' and 'BN4002'. From the AFLP analysis, 105 polymorphic fragments were identified between the inbred lines using 1,440 primer combinations of EcoRI+CNNN and XbaI+ANNN. Based on the sequencing data of these polymorphic fragments, we synthesized sequence specific primer pairs and detected clear and reliable polymorphisms in 27 primer pairs by indels(insertion/deletion) or RFLP(restriction fragment length polymorphism). A total of 43 sequence-based PCR markers were obtained and polymorphic information content(PIC) was analyzed to measure the informativeness of each marker in watermelon varieties. The average PIC value of SCAR markers was 0.41, which was similar to that of SSR markers. Genetic diversity was also estimated by using these markers to assess the phylogenetic relationships among commercial varieties of watermelon. These markers differentiated 26 Korean watermelon varieties into two major phylogenetic groups, but this grouping was not significantly correlated with their morphological and physiological characteristics. The mean genetic similarity was 66% within the complete set of 26 commercial varieties. In addition, these sequence-based PCR markers were reliable and useful to identify cultivars and genotypes of watermelon.

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Analysis of KOMPSAT-5 Orbit for Radargrammetry (레이더 측량기법 적용을 위한 다목적실용위성 5호 궤도 분석)

  • Lee, Hoon-Yol;Jang, So-Young
    • Korean Journal of Remote Sensing
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    • v.24 no.4
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    • pp.351-358
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    • 2008
  • KOMPSAT-5 will be launched in 2010 carrying a SAR (Synthetic Aperture Radar) system to obtain high resolution images of the earth surface regardless of weather or solar condition. In this paper, the orbits of KOMPSAT-5 and the imaging modes of SAR were analyzed for radargrammetry, and the best image pairs were suggested. We set the pass number from the nearest orbit to a given ground point and selected image pairs for radargrarnmetry, with height sensitivity of parallax higher than 0.5 to achieve enough height resolution and with the value lower than 0.8 to avoid errors from geometric distortion. On the equator, for example, where the distance between two adjacent passes is fixed to 95 km, we solved the orbit geometry and found that the image pairs with the pass numbers of 3-2 and 5-3 are suitable for radargrarnmetry. As the examples with arbitrary latitude, we selected Daejeon and Sejong Antarctic stations and calculated the orbital elements by using STK software. Three image pairs (5-4, 7-5 and 8-5) were found suitable for radargrammetry at Daejeon while 10 pairs (8-6, 9-7, 10-7, 11-8, 12-8, 13-9, 14-9, 15-9, 15-10 and 15-11) at Sejong Antarctic station.

Fingerprint Recognition using Information of Ridge Shape of Minutiae (특징점의 융선형태 정보를 이용한 지문인식)

  • Park Joong-Jo;Lee Kil-Ho
    • Journal of the Institute of Convergence Signal Processing
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    • v.6 no.2
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    • pp.67-73
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    • 2005
  • Recently, the social requirement of personal identification techniques has been increasing. Fingerprint recognition is one of the biometries methods that has been widely used for this requirement. This paper proposes the fingerprint matching algorithm that uses the information of the ridge shapes of minutiae. In which, the data of the ridge shape are expressed in one-dimensional discrete-time signals. In our algorithm, we obtain one-dimensional discrete-time signals for ridge at every minutiae from input and registered fingerprints, and find pairs of minutia which have the similar ridge shape by comparing input fingerprint with registered fingerprint, thereafter we find candidates of rotation angle and moving displacement from the pairs of similar minutia, and obtain the final rotation angle and moving displacement value from those candidates set by using clustering method. After that, we align an input fingerprint by using obtained data, and calculate the matching rate by counting the number of corresponded pairs of minutia within the overlapped area of an input and registered fingerprints. As a result of experiment, false rejection rate(FRR) of $18.0\%$ at false acceptance rate(FAR) of $0.79\%$ is achieved.

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Effects of Maternal Education using Brazelton Neonatal Behavioral Assessment Scale on the Mother-Infant Interaction and Infant Behavior (브레즐튼 신생아행동평가법을 이용한 어머니교육이 모아상호작용과 영아행동에 미치는 효과)

  • Shin Yeung-Hee;Lee Seon-Ah
    • Child Health Nursing Research
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    • v.9 no.1
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    • pp.74-84
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    • 2003
  • This study was designed to investigate effects of maternal education using Brazelton Neonatal Behavioral Assessment Scale(the following will be marked as NBAS) on the mother-infant interaction and infant behavior. The subjects of this study consisted of 48 pairs of normal mother and infant, 24 pairs for intervention group and 24 pairs for control group. The subjects were recruited from two general hospitals, and an OBGY clinic located in J city. The data were collected from July 30, 2001 to October 6, 2001. Prior to investigation and data collection, following operational hypotheses were set up in order to compare the investigative data against these operational hypotheses(H). H1: Intervention group will higher mother-infant interaction score than control group. H2: Intervention group infants will higher overall performance in infant behavior test score than control group infants. The results of this study were summarized as follows: 1. The mother-infant interaction score was 59.79 points in intervention group and 53.91 points in control group. The mother-infant interaction score of intervention group showed significant difference than control group. Therefore, hypothesis 1 was supported. 2. The infant behavior score of intervention group was significantly higher than control group, but partially. Therefore, hypothesis 2 was partially supported. 1) The social interaction(orientation) score was 46.58 points in intervention group and 43.50 points in control group. The orientation score of intervention group showed significant difference than control group. 2) The state regulation score was 26.79 points in intervention group and 25.33 points in control group. The state regulation score of intervention group showed significant difference than control group. In conclusion, present work demonstrated that maternal education using NBAS is an effective intervention method for promotion of mother-infant interaction and of infant behavior development. Author believes that many inexperience young mother may find NBAS-based maternal education beneficial for their nursing babies, therefore NBAS-based intervention is recommended to be adopted routinely as an integral part of neonatal nursing strategies.

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DNA 염기 서열의 단편 조립 프로그램 개발

  • Lee, Byung-Uk;Park, Kie-Jung;Park, Wan;Park, Yong-Ha
    • Microbiology and Biotechnology Letters
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    • v.25 no.6
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    • pp.560-565
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    • 1997
  • DNA fragment assembly is a major concem in shot-gun DNA sequencing project. It is to reconstruct a consensus DNA sequence from a collection of random oritented fragments. We developed a computer program that is useful for DNA fragment assembly. Inputs to the program are DNA fragment sequences including IUB-IUPAC bases. The program produces the most probable reconstruction ot the original DNA sequence as a text format or a PostScript format. The program consists of four phases: the first phase quickly eliminates fragment pairs that can not possibly overlap. In the second phase, the quality of overlap between each pair is calculated to a score. In the third phase, overlap pairs are sorted by their scores and consistency of the overlaps is checked. The last phase determines consensus sequences and displays them. The performance of fragment assembly program was tested on a set of DNA fragment sequences which were generated from long DNA sequences of GenBank by a fragmentation program.

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A Method for Propagating Fuzzy Concepts through Fuzzy IF-THEN-ELSE Rules

  • Kim, Doohyun;Lim, Younghwan;Kim, Jin H.
    • Journal of the Korean Operations Research and Management Science Society
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    • v.12 no.2
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    • pp.21-35
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    • 1987
  • This paper presents a method for propagating fuzzy concepts through fuzzy IF-THEN-ELSE rules. A fuzzy IF-THEN-ELSE rule consists of a set of fuzzy condition and conclusion pairs. These pairs assumed to contain informations about a fuzzy mapping from fuzzy concepts of condition parts to the fuzzy concepts of conclusion parts. Conventionally, vectors are used to define fuzzy concepts and matrices are used to define a fuzzy mapping between fuzzy conditions and conclusions. This approach, however, does not satisfy the existing condition property, i.e., when a fuzzy input data exactly matches to a fuzzy condition, fuzzy output data should be mapped to a corresponding fuzzy conclusion. Alternatively, we propose a parameterized approach in which every fuzzy concept is described by a parameterized standard function, including fuzzy conditions and fuzzy conclusions. A fuzzy IF-THEN-ELSE rule takes the parameterized fuzzy concept as an input, and produces a standard function with new parameters as an output. New parameters are determined by a parameterwise interpolation. That is, each output parameters are determined by interpolating parameters of the same class contained in fuzzy conclusions. Obviously, the proposed scheme always satisfies the existing condition property.

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