• Title/Summary/Keyword: pH-mapping

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Detection of Mendelian and Parent-of-origin Quantitative Trait Loci for Meat Quality in a Cross between Korean Native Pig and Landrace

  • Choi, B.H.;Lee, Y.M.;Alam, M.;Lee, J.H.;Kim, T.H.;Kim, K.S.;Kim, J.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.12
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    • pp.1644-1650
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    • 2011
  • This study was conducted to detect quantitative trait loci (QTL) affecting meat quality in an $F_2$ reference population of Korean native pig and Landrace crossbreds. The three-generation mapping population was generated with 411 progeny from 38 $F_2$ full-sib families, and 133 genetic markers were used to produce a sex-average map of the 17 autosomes. The data set was analyzed using least squares Mendelian and parent-of-origin interval-mapping models. Lack-of-fit tests between models were used to characterize the QTL for mode of gene expressions. A total of 10 (32) QTL were detected at the 5% genome (chromosome)-wise level for the analyzed traits. Of the 42 QTL detected, 13 QTL were classified as Mendelian, 10 as paternal, 14 as maternal, and 5 as partial expressed QTL, respectively. Among the QTL detected at 5% genome-wise level, four QTL had Mendelian mode of inheritance on SSCs 5, 10, 12, and 13 for cooking loss, drip loss, crude lipid and crude protein, respectively; two QTL maternal inheritance for pH at 24-h and shear force on SSC11; three QTL paternal inheritance for CIE b and Hunter b on SSC9 and for cooking loss on SSC15; and one QTL partial expression for crude ash on SSC13, respectively. Most of the Mendelian QTL (9 of 13) had a dominant mode of gene action, suggesting potential utilization of heterosis for genetic improvement of meat quality within the cross population via marker-assisted selection.

Detection of QTL for Carcass Quality on Chromosome 6 by Exploiting Linkage and Linkage Disequilibrium in Hanwoo

  • Lee, J.H.;Li, Y.;Kim, J.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.25 no.1
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    • pp.17-21
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    • 2012
  • The purpose of this study was to improve mapping power and resolution for the QTL influencing carcass quality in Hanwoo, which was previously detected on the bovine chromosome (BTA) 6. A sample of 427 steers were chosen, which were the progeny from 45 Korean proven sires in the Hanwoo Improvement Center, Seosan, Korea. The samples were genotyped with the set of 2,535 SNPs on BTA6 that were imbedded in the Illumina bovine 50 k chip. A linkage disequilibrium variance component mapping (LDVCM) method, which exploited both linkage between sires and their steers and population-wide linkage disequilibrium, was applied to detect QTL for four carcass quality traits. Fifteen QTL were detected at 0.1% comparison-wise level, for which five, three, five, and two QTL were associated with carcass weight (CWT), backfat thickness (BFT), longissimus dorsi muscle area (LMA), and marbling score (Marb), respectively. The number of QTL was greater compared with our previous results, in which twelve QTL for carcass quality were detected on the BTA6 in the same population by applying other linkage disequilibrium mapping approaches. One QTL for LMA was detected on the distal region (110,285,672 to 110,633,096 bp) with the most significant evidence for linkage (p< $10^{-5}$). Another QTL that was detected on the proximal region (33,596,515 to 33,897,434 bp) was pleiotrophic, i.e. influencing CWT, BFT, and LMA. Our results suggest that the LDVCM is a good alternative method for QTL fine-mapping in detection and characterization of QTL.

TIMES: mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale. I. the first result.

  • Yun, Hyeong-Sik;Lee, Jeong-Eun;Choi, Yunhee;Evans, Neal J. II;Offner, Stella S.R.;Lee, Yong-Hee;Baek, Giseon;Choi, Minho;Kang, Hyunwoo;Lee, Seokho;Tatematsu, Ken'ichi;Heyer, Mark H.;Gaches, Brandt A.L.;Yang, Yao-Lun;Jung, Jae Hoon;Lee, Changhoon
    • The Bulletin of The Korean Astronomical Society
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    • v.44 no.1
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    • pp.42.2-42.2
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    • 2019
  • Turbulence is one of the natural phenomena in molecular clouds. It affects gas density and velocity fluctuation within the molecular clouds and controls the mode and tempo of star formation. However, despite many years of study, the properties of turbulence remain poorly understood. As part of the Taeduk Radio Astronomy Observatory (TRAO) Key Science Program (KSP), "mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale (TIMES; PI: Jeong-Eun Lee)", we have fully mapped two star-forming molecular clouds, the Orion A and the Ophiuchus molecular clouds, in 3 sets of lines ($^{13}CO$ J=1-0, $C^{18}O$ J=1-0, HCN J=1-0, $HCO^+$ J=1-0, CS J=2-1, and $N_2H^+$ J=1-0) using the TRAO 14-m telescope. We apply a statistical analysis, Principal Component Analysis (PCA), which can recover an underlying turbulent-power spectrum from an observed P-P-V spectral map. We compare turbulence properties not only between the two clouds, but also between different parts within each cloud. We present the first result of our observation program.

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Generalized Weyl's Theorem for Some Classes of Operators

  • Mecheri, Salah
    • Kyungpook Mathematical Journal
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    • v.46 no.4
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    • pp.553-563
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    • 2006
  • Let A be a bounded linear operator acting on a Hilbert space H. The B-Weyl spectrum of A is the set ${\sigma}_{B{\omega}}(A)$ of all ${\lambda}{\in}\mathbb{C}$ such that $A-{\lambda}I$ is not a B-Fredholm operator of index 0. Let E(A) be the set of all isolated eigenvalues of A. Recently in [6] Berkani showed that if A is a hyponormal operator, then A satisfies generalized Weyl's theorem ${\sigma}_{B{\omega}}(A)={\sigma}(A)$\E(A), and the B-Weyl spectrum ${\sigma}_{B{\omega}}(A)$ of A satisfies the spectral mapping theorem. In [51], H. Weyl proved that weyl's theorem holds for hermitian operators. Weyl's theorem has been extended from hermitian operators to hyponormal and Toeplitz operators [12], and to several classes of operators including semi-normal operators ([9], [10]). Recently W. Y. Lee [35] showed that Weyl's theorem holds for algebraically hyponormal operators. R. Curto and Y. M. Han [14] have extended Lee's results to algebraically paranormal operators. In [19] the authors showed that Weyl's theorem holds for algebraically p-hyponormal operators. As Berkani has shown in [5], if the generalized Weyl's theorem holds for A, then so does Weyl's theorem. In this paper all the above results are generalized by proving that generalizedWeyl's theorem holds for the case where A is an algebraically ($p,\;k$)-quasihyponormal or an algebarically paranormal operator which includes all the above mentioned operators.

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Identification of Quantitative Traits Loci (QTL) Affecting Growth Traits in Pigs

  • Kim, T.H.;Choi, B.H.;Lee, H.K;Park, H.S.;Lee, H.Y.;Yoon, D.H.;Lee, J.W.;Jeong, G.J.;Cheong, I.C.;Oh, S.J.;Han, J.Y.
    • Asian-Australasian Journal of Animal Sciences
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    • v.18 no.11
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    • pp.1524-1528
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    • 2005
  • Molecular genetic markers were used to detect chromosomal regions which contain economically important traits such as growth, carcass, and meat quality traits in pigs. A three generation resource population was constructed from a cross between Korean native boars and Landrace sows. A total of 240 F2 animals from intercross of F1 was produced. Phenotypic data on 17 traits, birth weight, body weights at 3, 5, 12, and 30 weeks of age, teat number, carcass weight, backfat thickness, body fat, backbone number, muscle pH, meat color, drip loss, cooking loss, water holding capacity, shear force, and intramuscular fat content were collected for F2 animals. Animals including grandparents (F0), parents (F1), and offspring (F2) were genotyped for 80 microsatellite markers covering from chromosome 1 to 10. Least squares regression interval mapping was used for quantitative trait loci (QTL) identification. Significance thresholds were determined by permutation tests. A total of 10 QTL were detected at 5% chromosome-wide significance levels for growth traits on SSCs 2, 4, 5, 6, and 8.

STEREO VISION-BASED FORWARD OBSTACLE DETECTION

  • Jung, H.G.;Lee, Y.H.;Kim, B.J.;Yoon, P.J.;Kim, J.H.
    • International Journal of Automotive Technology
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    • v.8 no.4
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    • pp.493-504
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    • 2007
  • This paper proposes a stereo vision-based forward obstacle detection and distance measurement method. In general, stereo vision-based obstacle detection methods in automotive applications can be classified into two categories: IPM (Inverse Perspective Mapping)-based and disparity histogram-based. The existing disparity histogram-based method was developed for stop-and-go applications. The proposed method extends the scope of the disparity histogram-based method to highway applications by 1) replacing the fixed rectangular ROI (Region Of Interest) with the traveling lane-based ROI, and 2) replacing the peak detection with a constant threshold with peak detection using the threshold-line and peakness evaluation. In order to increase the true positive rate while decreasing the false positive rate, multiple candidate peaks were generated and then verified by the edge feature correlation method. By testing the proposed method with images captured on the highway, it was shown that the proposed method was able to overcome problems in previous implementations while being applied successfully to highway collision warning/avoidance conditions, In addition, comparisons with laser radar showed that vision sensors with a wider FOV (Field Of View) provided faster responses to cutting-in vehicles. Finally, we integrated the proposed method into a longitudinal collision avoidance system. Experimental results showed that activated braking by risk assessment using the state of the ego-vehicle and measuring the distance to upcoming obstacles could successfully prevent collisions.

A Study on the Call-Setup and Message Mapping for Interworking between H.323 and SIP (H.323과 SIP간의 상호 연동을 위한 호 설정과 메시지 매핑에 관한 연구)

  • Kim, Jeong-Seok;Tae, Won-Kwi;Kim, Jeong-Ho;Ban, Jin-Yang
    • Journal of the Korea Computer Industry Society
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    • v.5 no.9
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    • pp.1017-1024
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    • 2004
  • In this paper, we propose the progressed interworking method between H.323 and SlP, then explain the improved property. The VolP(Voice over Internet Protocol) technology which is able to use a voice service through internet is more cheaper then existing telephone charges, and is easil)· accept the various of multimedia services from internet. Previous connectionmethod of VoIP used H.323 protocol, but it is very complex to connection establishment. so, the SIP(Session Initiation Protocol) protocol that propose in SIP-Working Group is in use recently. Therefore, we need new interworking methodology between H.323 and SIP Products. In this thesis, the progress interworking method between H.323 and SIP are Propose, then interpret unnecessary packet delay for call setup and improved feature of message exchange.

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Phosphorylation of 44-kilodalton Proteins in Peripheral T-lymphocyte of Rat (흰쥐 말초 혈액 림프구의 분자량 44 kD 단백의 인산화)

  • Ahn, Young-Soo;Jou, Il-O;Oh, Do-Yeun;Lim, Seung-Wook;Park, Kyung-Sun
    • The Korean Journal of Pharmacology
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    • v.27 no.2
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    • pp.135-144
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    • 1991
  • Using T-lymphocytes obtained from rat peripheral blood, we found that the 44kD/pI6.8 protein was the major phosphoprotein of T-lymphocytes under basal condition, and that the 44kD/pI6.3 protein was a new phosphoprotein appeared in T-lymphocytes stimulated with ${\beta}-agonist$. The phosphorylation of the 44kD/pI6.3 protein was also induced by forskolin but inhibited by H-8 pretreatment. To clarify the character of the 44kD/pI6.3 protein, we used Con-A and kinase inhibitors, H-7 and W-7. Con-A stimulation induced phosphorylation of 44kD/pI 6.3 protein but that was inhibited by W-7 pretreatment. The phosphorytation of 44kD/pI6.3 protein was not induced by the PKC activator, PMA. Instead, the phosphorylation of 44kD/pI6.8 protein was reduced by H-7, a PKC inhibitor. From the above results,it can be concluded that the 44kD/pI6.3 protein can be a common substrate for A-kinase and CaM kinase. The two dimensional tryptic peptide mapping revealed that the 44kD/pI6.8 and 44kD/pI6.3 proteins are different.

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${H^1}({\Omega})$-NORM ERROR ANALYSIS UNDER NUMERICAL QUADRATURE RULES BY THE P-VERSION OF THE FINITE ELEMENT METHOD

  • Kim, Ik-Sung;Kim, Chang-Geun;Song, Man-Suk
    • Communications of the Korean Mathematical Society
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    • v.9 no.2
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    • pp.467-489
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    • 1994
  • Let $\Omega$ be a closed and bounded polygonal domain in R$^2$, or a closed line segment in R$^1$ with boundary $\Gamma$, such that there exists an invertible mapping T : $\Omega$ \longrightarrow $\Omega$ with the following correspondence: x$\in$$\Omega$ ↔ x = T(x) $\in$$\Omega$, (1.1) and (1.2) t $\in$ U$\sub$p/($\Omega$) ↔ t = to T$\^$-1/ $\in$ U$\sub$p/($\Omega$), where $\Omega$ denotes the corresponding reference elements I = [-1,1] and I ${\times}$ I in R$^1$ and R$^2$ respectively, (1.3) U$\sub$p/($\Omega$) = {t : t is a polynomial of degree $\leq$ p in each variable on $\Omega$}, and (1.4) U$\sub$p/($\Omega$) = {t : t = to T $\in$ U$\sub$p/($\Omega$)}.(omitted)

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Biotope Types and Mapping for Ecological Management of Tricholoma matsutake Production Area: The Case of Expressway in Yangyang-gun, Gangwon-do (송이생산지의 생태적 관리를 위한 소나무비오톱 유형화 및 지도 작성: 강원도 양양군 동서고속도로 건설구간을 중심으로)

  • Kim, Jeong-Ho;Choi, Song-Hyeon;Yoon, Yong-Han
    • Journal of Environmental Policy
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    • v.11 no.3
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    • pp.25-47
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    • 2012
  • This research is to suggest an ecological management methods by classification of biotope type and its mapping for Tricholoma matsutake. The target area was construction site of the East Hongchun - Yangyang Highway (Yangyang section) where massive production of Tricholoma matsutakes is in place. Specifically, the 700 m long range of area around the road route, Yangyang section, which is over a total area of $19,79km^2$. The flow of this research was as follows: first studied were the characteristics of the Yangyang Tricholoma matsutakes; second, reviews on previous studies on Tricholoma matsutakes; third, the formulation of standards and processes of biotope type considering Tricholoma matsutake production; and fourth, mapping of biotope considering the production area of Tricholoma matsutake. In 24.77% of the region, slope angle measured $30{\sim}40^{\circ}C$, which is suitable for Tricholoma matsutake production. Also, 17.44% of the region had southward vegetation structures, and as for the Pinus densiflora; 26.00% had average receipts; the tree ages was $38{\pm}8.34$ years; and the average density of canopy layer was $9.55{\pm}4.89/100m^2$. The soil acidity (pH) values of 5.0 to 5.6(47.96%) > 5.6 to 7.0(42.90%) > 4.0 to 5.0(9.14%) were slightly high for Tricholoma matsutake growth; but 57.10% of the area had a soil pH of 4.0-5.6. The organic horizon (A0 layer) was $3.39{\pm}2.14cm$, and the mean depths were 4-6cm(78.03%) > 0-2cm(18.10%) > 2-4cm(3.87%). Based on the results of previous studies and field researches on the presence of vegetation (the pine dominance ratio), the topographic structure (the terrain characteristics and slopes), the receipt, the soil structure (the soil acidity and the organic layers interposed between the depths), and the vegetation density, six clusters based on the identified types of biotopes are produced in this paper. Area of distribution according to the type of biotope was Tricholoma matsutake of the potential-production (II) biotope (32.86%) > Tricholoma matsutake of the inadequate-production biotope (22.17%) > Tricholoma matsutake of the adequate (II)-production biotope (17.79%) > Tricholoma matsutake of the adequate (I)-production biotope (14.86%) > Tricholoma matsutake of the potential-production (I) biotope (9.77%) > Tricholoma matsutake of the produced biotope (2.55%).

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