• Title/Summary/Keyword: overlapped segment

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Estimation of the quantitative trait loci associated with breaking and bending types lodging resistance in rice using chromosome segment substitution lines derived from a cross between Takanari and Koshihikari

  • Mulsanti, Indria Wahyu;Yamamoto, Toshio;Ueda, Tadamasa;Samadi, Ahmad Fahim;Adachi, Shunsuke;Hirasawa, Tadashi;Ookawa, Taiichiro
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.133-133
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    • 2017
  • Lodging is one of the important constraints in rice production. The lodging destroys the canopy structure, and sharply reduces the capacity of photosynthetic rate and dry matter production. In cereal crops, stem lodging can be classified into two types: stem breaking type and stem bending type. To improve stem lodging resistance, it is important to reveal strong culm traits of superior lodging resistant varieties. There are large varietal differences in parameters associated with the bending moment at breaking (M) and flexural rigidity (FR). The indica variety Takanari possesses large M due to its large section modulus (SM) despite of its small bending stress (BS), while Takanari also has large FR due to its large secondary moment of inertia (SMI) and Young's modulus (YM). To identify quantitative trait loci (QTLs) and the corresponding genes associated with the parameters for M ($=SM{\times}BS$) and FR ($=SM{\times}YM$) should enable to develop lodging resistant varieties, efficiently. In order to identify QTLs for cell wall materials such as cellulose, hemicellulose and lignin associated with BS and YM, a set of Chromosome Segment of Substitution Lines (CSSLs) consisted of 37 lines with chromosome segments of Koshihikari in the genetic background of Takanari were used. Takanari had large M and small BS as compared with Koshihikari. The QTLs for BS were estimated on chromosomes 3, 5, 6, 8, 9, 10, 11 and 12. Koshihikari alleles increased BS in these QTLs. Takanari had a large FR due to its large SMI and YM as compared with Koshihikari. The YM was increased by substitution of the Koshihikari chromosomal segments on chromosomes 2, 10 and 11. Other QTLs estimated on chromosomes 7 and 12 that Koshihikari alleles contributed to the decrease of YM. For lignin, only one major QTL for lignin density was detected on chromosome 11. Hollocellulose densities were increased by the substitution of Koshihikari segments on chromosomes 5 and 11. On the other hand, these were decreased on chromosomes 1 and 3 by substitution of Koshihikari segments. QTLs for cellulose density were estimated on chromosomes 1, 3 and 5 by substitution of Koshihikari segments. For hemicellulose, QTL on chromosome 3 showed that hemicellulose density decreased by the substitution of Koshihikari segment. However, hemicellulose densities on chromosomes 5, 8 and 11 showed the opposite effects. The QTLs for hemicellulose, cellulose, and hollocelulose densities identified on chromosome 5 overlapped with that for bending stress, indicating the positive effect of Koshihikari segment on increasing bending stress. These results suggest that some QTLs for the densities of cell wall materials contribute to increasing bending stress and Young's modulus, and could be utilized to improve the lodging resistance for both types of breaking and bending in rice varieties.

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Facial Image Segmentation using Wavelet Transform (웨이브렛 변환을 적용한 얼굴영상분할)

  • 김장원;박현숙;김창석
    • Journal of the Institute of Electronics Engineers of Korea TE
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    • v.37 no.3
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    • pp.45-52
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    • 2000
  • In this study, we propose the image segmentation algorithm for facial region segmentation. The proposed algorithm separates the mean image of low frequency band from the differential image of high frequency band in order to make a boundary using HWT, and then we reduce the isolation pixels, projection pixels, and overlapped boundary pixels from the low frequency band. Also the boundaries are detected and simplified by the proposed boundary detection algorithm, which are cleared on the thinning process of 1 pixel unit. After extracting facial image boundary by using the proposed algorithm, we make the mask and segment facial image through matching original image. In the result of facial region segmentation experiment by using the proposed algorithm, the successive facial segmentation have 95.88% segmentation value.

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Complex Cell Image Segmentation via Structural Feature Information (구조적 특징 정보를 이용한 복잡한 세포영상 분할)

  • Kim, Seong-Gon
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.10
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    • pp.35-41
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    • 2012
  • We propose a new marker driven Watershed algorithm for automated segmentation of clustered cell from microscopy image with less over segmentation. The Watershed Transform is able to segment extremely complex objects which are highly touched and overlapped each other. The success of the Watershed Transform depends essentially on the finding markers for each of the objects of interest. For extracting of markers positioning around center of each cell we used radial symmetry and iterative voting algorithms. With synthetic and real images, we quantitatively demonstrate the performance of our method and achieved better results than the other compared methods.

Edge Pattern Classification Method for Efficient Line Detection (효율적인 직선 검출을 위한 에지 패턴 분류 방법)

  • Park, Sang-Hyun;Kim, Jong-Ho;Kang, Eui-Sung
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2011.10a
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    • pp.918-920
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    • 2011
  • In this paper, a simple edge pattern classification method is proposed for detecting straight line segments in an image corrupted by impulse noise. Corrupted images have complicated edge patterns. To detect straight line from an complicated edge pattern, it is needed to simplify the entire edge. The proposed algorithm separates the entire edge into 4 directional partial edge patterns. Each line segment is separated from the partial edge image where several line segments are overlapped, and then the straight line is detected. The results of the experiments emphasize that the proposed algorithm is simple but accurate.

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Convolutional Neural Network-Based Automatic Segmentation of Substantia Nigra on Nigrosome and Neuromelanin Sensitive MR Images

  • Kang, Junghwa;Kim, Hyeonha;Kim, Eunjin;Kim, Eunbi;Lee, Hyebin;Shin, Na-young;Nam, Yoonho
    • Investigative Magnetic Resonance Imaging
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    • v.25 no.3
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    • pp.156-163
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    • 2021
  • Recently, neuromelanin and nigrosome imaging techniques have been developed to evaluate the substantia nigra in Parkinson's disease. Previous studies have shown potential benefits of quantitative analysis of neuromelanin and nigrosome images in the substantia nigra, although visual assessments have been performed to evaluate structures in most studies. In this study, we investigate the potential of using deep learning based automatic region segmentation techniques for quantitative analysis of the substantia nigra. The deep convolutional neural network was trained to automatically segment substantia nigra regions on 3D nigrosome and neuromelanin sensitive MR images obtained from 30 subjects. With a 5-fold cross-validation, the mean calculated dice similarity coefficient between manual and deep learning was 0.70 ± 0.11. Although calculated dice similarity coefficients were relatively low due to empirically drawn margins, selected slices were overlapped for more than two slices of all subjects. Our results demonstrate that deep convolutional neural network-based method could provide reliable localization of substantia nigra regions on neuromelanin and nigrosome sensitive MR images.

Image Segmentation Algorithm Based on Geometric Information of Circular Shape Object (원형객체의 기하학적 정보를 이용한 영상분할 알고리즘)

  • Eun, Sung-Jong;WhangBo, Taeg-Keun
    • Journal of Internet Computing and Services
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    • v.10 no.6
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    • pp.99-111
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    • 2009
  • The result of Image segmentation, an indispensable process in image processing, significantly affects the analysis of an image. Despite the significance of image segmentation, it produces some problems when the variation of pixel values is large, or the boundary between background and an object is not clear. Also, these problems occur frequently when many objects in an image are placed very close by. In this paper, when the shape of objects in an image is circular, we proposed an algorithm which segment an each object in an image using the geometric characteristic of circular shape. The proposed algorithm is composed of 4 steps. First is the boundary edge extraction of whole object. Second step is to find the candidate points for further segmentation using the boundary edge in the first step. Calculating the representative circles using the candidate points is the third step. Final step is to draw the line connecting the overlapped points produced by the several erosions and dilations of the representative circles. To verify the efficiency of the proposed algorithm, the algorithm is compared with the three well-known cell segmentation algorithms. Comparison is conducted by the number of segmented region and the correctness of the inner segment line. As the result, the proposed algorithm is better than the well-known algorithms in both the number of segmented region and the correctness of the inner segment line by 16.7% and 21.8%, respectively.

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Adult Morphological Measurements: An Indicator to Identify Sexes of Japanese Pine (솔수염하늘소(Monochamus alternatus) 성충의 형태 측정과 암수 구분)

  • 이상명;정영진;김동수;최광식;김영걸;박정규
    • Korean journal of applied entomology
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    • v.43 no.1
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    • pp.85-89
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    • 2004
  • Numerical measurements were made for fresh weight, body length and width, head width, and color and length of antenna of Japanese pine sawyer, Monochamus alternatus adults, a primary vector of pine wood nematode, Bursaphelenchus xylophilus in Korea. We measured 563 females and 601 males that emerged out of dead pine logs from 2001 to 2002. General linear model analysis showed that measurements of fresh weight, body length, and body width were significantly higher in females than in males. Head width was not significantly different between sexes. Antennal length of males was significantly longer than that of females. For females and males respectively, average fresh weights were 0.305g and 0.277g, body lengths 20.97mm and 19.93mm, body widths 6.52mm and 6.18mm, head widths 3.78mm and 3.70mm, and antennal lengths 31.19mm and 45.49 mm. Antennal length or ratio of antennal length to body length overlapped in some ranges between 2 sexes. Therefore antennal length itself or ratio of antennal length to body length could not be used as a definite criterion to discriminate sexes. However, check on color of the antennae of 4,033 adults revealed without exception that basal part of every segment of flagellum of female antenna was covered with whitish-grey hairs, while whole part of every segment of male flagellum was covered with brownish-black hairs. This characteristics might be a best way to differentiate sex of this species.

Taxonomic study of the genus Diplazium (Woodsiaceae) in Korea (한국산 참빗고사리속(우드풀과)의 분류)

  • Lee, Chang Shook
    • Korean Journal of Plant Taxonomy
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    • v.35 no.3
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    • pp.175-186
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    • 2005
  • Cladistic analysis was performed to reveal the interspecific relationship of nine taxa of Korean Diplazium (Woodsiaceae). A total of 29 taxa with 20 taxa of eastern asiatic species as ingroup and three taxa of Athyrium as outgroup, were analyzed with 17 morphological characters. Diplazium nipponicum, recently found from Jeju Island, was most closely related to D. chinense by having the acuminate apex of pinnule segment and fascicled fronds. Diplazium nipponicum was distinguished from D. chinense by having scales and pinnule segments of serrated margin, and non-overlapped pinnules. Diplazium nipponicum and D. chinense were closely related to D. mesosorum and D. hajizoense in sequence, by having long acute apex in pinnae. These species formed same clade with D. subtripinnatum, which is endemic to Japan and D. kawakamii, which is distributed in Japan and Taiwan.

Effective Line Detection of Steel Plates Using Eigenvalue Analysis (고유값 분석을 이용한 효과적인 후판의 직선 검출)

  • Park, Sang-Hyun;Kim, Jong-Ho;Kang, Eui-Sung
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.15 no.7
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    • pp.1479-1486
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    • 2011
  • In this paper, a simple and robust algorithm is proposed for detecting straight line segments in a steel plate image. Line detection from a steel plate image is a fundamental task for analyzing and understanding of the image. The proposed algorithm is based on small eigenvalue analysis. The proposed approach scans an input edge image from the top left comer to the bottom right comer with a moving mask. A covariance matrix of a set of edge pixels over a connected region within the mask is determined and then the statistical and geometrical properties of the small eigenvalue of the matrix are explored for the purpose of straight line detection. Before calculating the eigenvalue, each line segment is separated from the edge image where several line segments are overlapped to increase the accuracy of the line detection. Additionally, unnecessary line segments are eliminated by the number of pixels and the directional information of the detected line edges. The respects of the experiments emphasize that the proposed algorithm outperforms the existing algorithm which uses small eigenvalue analysis.

Decomposition based on Object of Convex Shapes Using Poisson Equation (포아송 방정식을 이용한 컨벡스 모양의 형태 기반 분할)

  • Kim, Seon-Jong;Kim, Joo-Man
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.14 no.5
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    • pp.137-144
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    • 2014
  • This paper proposes a novel procedure that uses a combination of overlapped basic convex shapes to decompose 2D silhouette image. A basic convex shape is used here as a structuring element to give a meaningful interpretation to 2D images. Poisson equation is utilized to obtain the basic shapes for either the whole image or a partial region or segment of an image. The reconstruction procedure is used to combine the basic convex shapes to generate the original shape. The decomposition process involves a merging stage, filtering stage and finalized by compromising stage. The merging procedure is based on solving Poisson's equation for two regions satisfying the same symmetrical conditions which leads to finding equivalencies between basic shapes that need to be merged. We implemented and tested our novel algorithm using 2D silhouette images. The test results showed that the proposed algorithm lead to an efficient shape decomposition procedure that transforms any shape into a simpler basic convex shapes.