• 제목/요약/키워드: origin identification

검색결과 219건 처리시간 0.076초

Neutron Activation Analysis of Korean Clays and Pottery

  • 이철;권오천;김낙배
    • Bulletin of the Korean Chemical Society
    • /
    • 제6권4호
    • /
    • pp.241-246
    • /
    • 1985
  • Twenty trace elements were determined in 250 Korean potsherds and 5 clay samples by instrumental NAA. In the absence of identified samples of known origin, the potsherds were classified by a hierarchical centroid sorting method to construct a dendrogram. From this dendrogram 61 well-defined samples were selected to form 8 subclasses and five elements such as Cr, Cs, Sm, Sc and Th were supposed to be the main contributors for the classification. The 61 samples along with 5 clay samples were reclassified by means of minimal spanning tree as well as the hierarchical centroid sorting method by using 5 elements selected. As the results, the potsherds of certain classes defined in this work could be taken as a basis for latter identification and served as batches of identified species.

Identification of a norovirus from diarrheic dog in Gwangju, Republic of Korea

  • Ba-Ra-Da Koh;Su-Yeon Seo;Ga-Hoi Choi;Byeong-Cheol Yoon
    • 한국동물위생학회지
    • /
    • 제46권3호
    • /
    • pp.235-241
    • /
    • 2023
  • Noroviruses are a major cause of gastroenteritis in humans and animals worldwide. In 2021, canine norovirus (CNoV) infection was detected at an animal clinic in Gwangju area, South Korea. A semi-nested polymerase chain reaction was developed to amplify a 478 bp fragment of the RdRp gene of CNoV. The phylogenetic analysis of this fragment confirmed the strain to be genogroup IV.2 (Dog/GIV.2/gw/s377/2021/KOR), which exhibited the highest similarity to the feline NoV strain GIV.2/CU081210E/USA/2010 (accession no. NC_045762) with 95.1% nucleotide (nt) identity and 98.7% amino acid (aa) identity. These research findings indicate that the detected norovirus in dogs is genetically similar to a feline-origin norovirus, suggesting easy cross-species transmission among animals.

Development and Evaluation of a Next-Generation Sequencing Panel for the Multiple Detection and Identification of Pathogens in Fermented Foods

  • Dong-Geun Park;Eun-Su Ha;Byungcheol Kang;Iseul Choi;Jeong-Eun Kwak;Jinho Choi;Jeongwoong Park;Woojung Lee;Seung Hwan Kim;Soon Han Kim;Ju-Hoon Lee
    • Journal of Microbiology and Biotechnology
    • /
    • 제33권1호
    • /
    • pp.83-95
    • /
    • 2023
  • These days, bacterial detection methods have some limitations in sensitivity, specificity, and multiple detection. To overcome these, novel detection and identification method is necessary to be developed. Recently, NGS panel method has been suggested to screen, detect, and even identify specific foodborne pathogens in one reaction. In this study, new NGS panel primer sets were developed to target 13 specific virulence factor genes from five types of pathogenic Escherichia coli, Listeria monocytogenes, and Salmonella enterica serovar Typhimurium, respectively. Evaluation of the primer sets using singleplex PCR, crosscheck PCR and multiplex PCR revealed high specificity and selectivity without interference of primers or genomic DNAs. Subsequent NGS panel analysis with six artificially contaminated food samples using those primer sets showed that all target genes were multi-detected in one reaction at 108-105 CFU of target strains. However, a few false-positive results were shown at 106-105 CFU. To validate this NGS panel analysis, three sets of qPCR analyses were independently performed with the same contaminated food samples, showing the similar specificity and selectivity for detection and identification. While this NGS panel still has some issues for detection and identification of specific foodborne pathogens, it has much more advantages, especially multiple detection and identification in one reaction, and it could be improved by further optimized NGS panel primer sets and even by application of a new real-time NGS sequencing technology. Therefore, this study suggests the efficiency and usability of NGS panel for rapid determination of origin strain in various foodborne outbreaks in one reaction.

Identification of Six Single-Strand Initiation (ssi) Signals for Priming of DNA Replication in Various Plasmids

  • Jeong, Jin-Yong;Seo, Hak-Soo;Kim, Ho-Yeon;Cho, Moo-Je;Bahk, Jeong-Dong
    • BMB Reports
    • /
    • 제28권4호
    • /
    • pp.336-341
    • /
    • 1995
  • Using a mutant M13 phage derivative lacking a great part of the complementary strand synthesis origin, we identified six single-strand initiation (ssi) signals for DNA replication in pACYC184, pLG214, pGKV21, and pDPT270 plasmids, and named them $ssiA_{YC}$, $ssiA_{LG}$, $ssiB_{LG}$, $ssiA_{KV}$, $ssiA_{PT}$, and $ssiB_{PT}$, respectively. Two of them were from pDPT270, one from downstream the on of pACYC184, two from pLG214, one from upstream the plus origin of pGKV21. Introduction of these ssi signals into the deleted $ori_c$ site of a mutant filamentous M13 phage ($M13{\Delta}lac182$) resulted in the restoration of growth activity of this phage. These ssi signals were classified into a number of groups on the basis of sequence similarity. $ssiA_{YC}$ and $ssiA_{LG}$ show extensive sequence homology to the n'-site (primosome assembly sites) of ColE1, whereas $ssiB_{PT}$ is homologous to the n'-site of ${\Phi}X174$. $ssiA_{PT}$ belongs to G4-type ssi signals which require only dnaG primase and SSB protein for the priming of replication. In addition, possible biological roles of these ssi signals are discussed.

  • PDF

"온열경위(溫熱經緯)" 중(中) 섭향암(葉香巖)의 삼시복기외감(三時伏氣外感)에 관한 연구(硏究) (A Study on Latent-gi by Yexiangyan "Wenrejingwei")

  • 안준모;송지청;정현종;금경수
    • 대한한의정보학회지
    • /
    • 제16권2호
    • /
    • pp.163-187
    • /
    • 2010
  • The concept of latent-gi(伏氣) was first mentioned in Yellow Emperor's Canon of Internal Medicine. For example, Elementary Questions states, "Damage by cold in winter necessarily engenders warm disease in the spring." Zhang Zhong-Jing of Han Dynasty in On Cold Damage and Miscellaneous Diseases mentions warm disease, stating, for example, "Greater yang disease with heat effusion and cough and without aversion to cold is warm disease. If sweating is applied, and there is generalized heat, this is wind warmth." However, the concept of warm disease was not central to his systematic presentation of externally contracted disease which placed the emphasis on wind and cold as the major causes of these diseases. Zhang Zhong-Jing's theories centuries after in the Sung Dynasty were to become the focus of the cold damage school, whereas the concept of warm disease was to become the focus of a rival school, the warm disease school. In the Sui-Tang Period, The Origin and Indications of Disease mentions warm diseases, their causes, patterns, and major principles of treatment. Successive generations of doctors wrote about warm disease, and in the Ming Dynasty writings on the subject become more prolific. This development is attributable on the one hand to the opening up of the south of China where febrile diseases tended to be of a different nature than in the north, and on the other to pestilences arising as a result of wars. In this period, Wu You-Xing in On Warm Epidemics explained in detail the laws governing the origin, development and pattern identification of warm epidemics. Notably, he posed the etiological notion of a contagious perverse gi.

  • PDF

입원 암환자의 통증 실태와 통증관리 실태 (Pain and Pain Management in Hospitalized Cancer Patients)

  • 김미정;박진아;신수진
    • 기본간호학회지
    • /
    • 제15권2호
    • /
    • pp.161-170
    • /
    • 2008
  • Purpose: The purpose of this study was to provide basic data for proper pain management. Method: Data were collected from 85 hospitalized patients with cancer pain. A retrospective chart review of level of pain, source of pain, verbal expression of pain, and pain management was done. The data were analyzed with the SPSS program. Results: The level of pain measured by NRS at the three time points was as follows Time 1 ($4.40{\pm}2.25$), Time 2 ($0.61{\pm}1.30$), Time 3 ($2.47{\pm}2.75$). The kinds of pain were somatic pain (51.8%), visceral pain (37.6%), neuropathic pain (12.9%). The analgesic amount measured by OME (oral morphine equivalent) was as follows: Time 1 ($70.85{\pm}69.65$), Time 2 ($91.61{\pm}89.20$), Time 3 ($96.71{\pm}94.25$). Degree of pain had significant differences according to type of cancer (F=-3.286, p= .002), cancer origin (F=2.906, p= .018), and metastasis (F=2.906, p= .018) at Time 2. Best control period had significant difference according to type of cancer (F=2.373, p= .023), and origin of cancer (F=2.466, p= .040) at Time 2 Conclusion: These finding will enable the application of nursing interventions for pain control in cancer patients, identification of kinds of nursing compared to priorities, and increased levels of comfort in cancer patients in clinical settings.

  • PDF

Anterior Choroidal Artery Aneurysm Surgery : Ischemic Complications and Clinical Outcomes Revisited

  • Lee, Young-Sup;Park, Jaechan
    • Journal of Korean Neurosurgical Society
    • /
    • 제54권2호
    • /
    • pp.86-92
    • /
    • 2013
  • Objective : Surgical results for anterior choroidal artery (AChA) aneurysms have previously been reported as unsatisfactory due to inadvertent occlusion of the AChA, while the low incidence of AChA aneurysms hampers the accumulation of surgical experience. The authors reviewed their related surgical experience to document the ischemic complications and surgical outcomes. Methods : Identification of the AChA at its origin by rigorous visual scrutiny, careful microdissection, and meticulous clip placement to avoid the AChA origin are all crucial surgical maneuvers. A retrospective review of a surgical series of 62 consecutive cases of an AChA aneurysm between 2004 and 2012 was performed. Results : All patients, except for five (8.1%) with a small residual neck, showed complete aneurysm obliteration in postoperative angiographic evaluations. There was no incidence of procedure-related permanent AChA syndrome or oculomotor nerve palsy, while three (4.8%) patients suffered from transient AChA syndrome. The clinical outcomes [the 3-month modified Rankin Scale (mRS)] of the patients were related to their preoperative World Federation of Neurologic Surgeons (WFNS) grade. As regards the 3-month mRS, significant differences were found between patients with an unruptured aneurysm (WFNS grade 0; n=20), good-grade subarachnoid hemorrhage (WFNS grade 1-3; n=30), and poor-grade subarachnoid hemorrhage (WFNS grade 4-5; n=4). Conclusion : In surgical treatment of AChA aneurysms, a risk of AChA insufficiency can be minimized by taking every precaution to preserve the AChA patency and intraoperative monitoring. In addition, the surgical outcome is primarily determined by the preoperative clinical state.

이온교환크로마토그래피에서 라이소자임 분리에 미치는 pH와 온도 영향 (The Effect of pH and Temperature on Lysozyme Separation in Ion-exchange Chromatography)

  • 고관영;김인호
    • Korean Chemical Engineering Research
    • /
    • 제52권1호
    • /
    • pp.98-105
    • /
    • 2014
  • 라이소자임은 용균 작용, 조직 회복 과정의 촉진 등의 작용을 하며 난백 중에 0.3% 함유되어 있다. 난백에서 라이소자임을 분리하는 방법으로 친화성 크로마토그래피, 이온교환크로마토그래피, 한외여과법 등이 있는데 이 중 이온교환크로마토그래피가 가장 많이 사용된다. 라이소자임을 양이온 젤이 충전된 유리 칼럼에서 분리 정제할 때 최적의 pH와 온도 조건을 찾는 것을 실험 목표로 하고, ASPEN Chromatography 전산 모사의 결과와 비교하였다. 실험에 사용되는 완충용액은 인산완충용액이었고 pH를 5~8로 변화를 주어 상온에서 실험하였고, 가장 분리가 잘 이루어진 pH에서 온도를 $5^{\circ}C$ 간격으로 $25{\sim}40^{\circ}C$로 변화시켜 실험하였다. RP-HPLC (Reversed phase High Performance Liquid Chromatography) 분석을 통해 라이소자임의 체류 시간을 확인하였고, OriginPro 8을 이용해 용출 단계에서 크로마토그램의 면적을 비교하여 라이소자임의 양을 정량분석하였다. 결과를 분석한 결과, pH 5일 때, 온도가 $25^{\circ}C$에서 가장 많은 양의 라이소자임이 분리되었다.

이용자 불확실성에 관한 연구 - 에듀넷 시스템 활용을 중심으로 - (An Uncertainty Study: Focused on the Use of the Edunet System)

  • 김양우
    • 한국문헌정보학회지
    • /
    • 제50권1호
    • /
    • pp.71-99
    • /
    • 2016
  • 본 연구는 이용자들의 불확실성과 관련된 정보추구행태를 조사하였다. KERIS 에듀넷 시스템을 활용하여 국사 영역의 정보를 탐색하는 이용자집단을 대상으로 자료수집이 이루어졌고, 수집된 자료는 근거이론의 지속적인 비교분석에 의해 분석되었다. 연구결과는 정보요구의 식별, 정보시스템의 선정, 탐색어의 선택, 정보시스템의 이용 및 탐색결과의 평가 등 다섯 단계에 걸친 이용자 불확실성을 제시하였다. 에듀넷 시스템 및 관련 서비스의 제고로 나누어 제시된 본 연구의 제안점은 다음과 같이 요약될 수 있다. 시스템 측면에서는 탐색 및 디스플레이 인터페이스 기능을 포함한 검색 메커니즘의 개선, 그리고 지원하는 자료의 확충으로 정리되었다. 서비스 측면에서는 정보서비스 제공자가 '불확실성의 근원'(origin of uncertainty)을 파악함이 중요하다는 점이 강조되었다. 즉 '근원'이 시스템 기능의 미흡함과 관련되어 있는지, 아니면 특정 이용자의 탐색경험 부족 또는 탐색능력 미비에만 기초한 것인지를 파악할 필요성을 제시하였다. 즉 제반 요인들을 고려한 정보서비스 제공자의 개입이 요구됨을 강조하였다.

한국산 및 중국산 김치의 Bacteria 군집 분석 및 발효과정 중 Bacilli 포자 형성 규명 (Bacterial Community Monitoring of Commercial Kimchi Produced in Korea and China with Evidence of Bacilli Spore Formation during Fermentation)

  • 안두현;김혜림;정도원;;이종훈
    • 한국미생물·생명공학회지
    • /
    • 제42권2호
    • /
    • pp.121-130
    • /
    • 2014
  • Bacteria 군집 차이를 이용한 신속한 한국산 및 중국산 김치 원산지 판별 가능성의 검토를 위하여 Terminal Restriction Fragment Length Polymorphism (T-RFLP) 분석법을 적용하였다. T-RFLP 분석은 김치발효에 관여하는 주요 유산균의 빠르고, 재현성 있는 검출에는 효과적이었지만, 종(species) 수준에서의 미생물 확인에는 한계를 가지고 있어 한국산 및 중국산 김치에 특이적으로 존재하는 bacteria의 검출에는 부적합한 것으로 평가되었다. T-RFLP를 적용한 발효과정 중의 한국산 및 중국산 김치에 존재하는 bacteria 군집 천이 분석은 비슷한 양상으로 나타났고, Bacillus 속이 발효 후기까지 검출되었다. 또한 Bacillus 속은 발효 후기에 포자를 형성하는 것으로 확인되었다.