• Korean Journal of Fisheries and Aquatic Sciences
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• v.28 no.2
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• pp.174-182
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• 1995

Using the optical data from the EUMELI 3 and 4 missions, the optical properties are discussed in relation to primary production in the oligotrophic zone of the Eastern Atlantic Ocean. The depth of euphotic layer $(Z_{eu})$, the total accumulated concentration of pigment $(C_{TOT})$ and the concentration of pigment (C) are 88m, $12.4mgm^{-2}\;and\;0.14mgm^{-3}$, respectively for the EUMELI 3 mission and 101.7m, $10.0mgm^{-2}\;and\;0.10mgm^{-3}$, respectively for the EUMELI 4 mission. The concentration of pigment is higher in autumn (EUMELI 3) than in spring (EUMELI 4). This indicates that the concentration of photosynthetic pigment has a close correlation with vertical attenuation coefficient $(K(\lambda))$ that changes seasonally in the euphotic layer. While the spectral distributions of downward Irradiance$(E_d)$ for the wave length of 470nm increase with depth, those of upward irradiance $(E_u)$ for the wave length range between 410nm and 490nm are constant, because the study area is covered with the blue and clear oceanic deep waters. The vertical attenuation coefficients of downward irradiance $(K_d)$ and upward irradiance $(K_u)$ have low values between 0.02 and $0.06m^{-1}$ due to the low absorption and scattering by the photosynthetic pigment of phytoplankton. Therefore this zone has the characteristics of the case 1 waters with low concentrations of photosynthetic pigment, and can be classifed into IB.

• 한국해양학회지
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• v.26 no.3
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• pp.255-261
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• 1991

Bacterial abundance and production in the water column over two seamounts (Horizon Guyot and magellan rise) in the central North Pacific were studied in March 1987. Bacterial abundance (0.9-2.3${\times}$10/SUP 8/ l/SUP -1/) in surface waters during the study period were in the lower limit of the values reported for oligotrophic areas. further, bacterial abundance in mesopelagic zone (mostly<5${\times}$ 10/SUP 7/ l/SUP -1/) was much lower than that reported from other tropical areas. Bacterial production 920-466 ng C l/SUP -1/ d/SUP -1/) in surface waters was also low compared to other oligotrophic oceanic environments. However, comparison of bacterial production with the earlier reported values of primary production from these regions suggested a significant role of bacteria in the utilization of organic matter in further studies on spatial distribution of bacterial production on both small and large scales in very oligotrophic aquatic environments are suggested to be necessary.

• The Korean Journal of Ecology
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• v.8 no.1
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• pp.21-29
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• 1985

The physico-chemical properties of sediment, the species composition and biomass of benthic diatoms were investigated in the intertidal zone of Kum river estuary, from July 1983 to May 1984. Sandflat sediment was more oligotrophic than mudflat one. The diatom composition was primarily associated with sediment grain size. The dominant epipelic diatoms belonged to the centric diatoms such as Paralia sulcata and Thalassiosira spp., while the epipsammic diatoms consisted mainly of Achnanthes haukiana and Amphora sabyii. Diatom flora of sandflat was more significantly diverse than that of mudflat. Mean yearly crop of sandflat diatoms was 2.8 times greater than that of mudflat diatoms and peaked at March reflecting the greater availability of ammonia.

• Korean Journal of Microbiology
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• v.41 no.4
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• pp.293-299
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• 2005

Many isolates from soil of Korean ginseng rhizosphere did not show remarkable growth on full strength of the conventional nutrient broth (NB medium) but grew on its 100-fold dilution (DNB medium). Six hundred-forty strains were isolated as oligotrophic bacteria. In the course of screening for new bioactive compounds from oligotrophic bacteria from soil, 8 strains which had appeared to form of clear zone on a medium containing colloidal chitin as a sole carbon source were selected for further studies. Strain CR42 hydrolyzed a fluorogenic analogue of chitin, 4-methylumbelliferyl-D-glucosaminide (MUF-NAG) . Mo st of the culture supernatant of these isolates hydrolyzed 4-methylumbelliferyl-D-N,N'-diacetylchitobioside (MUF-diNAG). The isolates were heterogeneous and categorized to gamma- and beta-proteobacteria, Bacillaceae, Actinobactepia, and Bacteroides by 16S rRNA analysis. Two strains, WR164 and CR18, had a 16S rRNA sequence of $95-96\%$ identical to uncultured bacteria. It was observed that CR2 and CR75 could inhibit the growth of Colletotrichum gloeosporioides with hyphal extention-inhibition assay on PDA plate supplemented with $1\%$ colloidal chitin.

• Journal of the korean society of oceanography
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• v.39 no.1
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• pp.20-25
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• 2004

The Yellow Sea is known to be a very productive region in terms of fisheries. However, its trophic status seems to be highly variable, ranging from oligotrophic to eutrophic, based on new production (NP) values. The NP and regenerated production (RP) values estimated from $^{15}N$-labelled nitrate and ammonium uptake in spring (April 1996) and winter (February 1997) during this study ranged from 0.05 to 19.8 mg $N m^{-2} d^{-1}$ and from 0.1 to 22.8 mg $N m^{-2}d^{-1}$, respectively. Our measurements and earlier observations suggested that NP in the Yellow Sea varied over the four orders of magnitude (range 0.05-180.9 mg $N m^{-2} d^{-1}$) temporally and spatially, and that RP (range 0.1-507.5 mg $N m^{-2}d^{-l}$) based on ammonium predominated during most period of the year, except in winter when both productions were low. The significant nitrogen uptake by phytoplankton below the euphotic zone and episodic entrainment of phytoplankton from below the euphotic zone into the euphotic zone, and nitrite excretion and dissolved organic nitrogen release during nitrate uptake might explain the apparent dominance of RP in the Yellow Sea.

• Microbiology and Biotechnology Letters
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• v.39 no.3
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• pp.210-217
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• 2011

In an effort to isolate novel bacteria for the bioremediation of over-fertilized soils, we identified 135 denitrifying cells out of 3,471 oligotrophic bacteria pools (3.9%) using a denitrification medium supplemented with potassium nitrate as the sole nitrogen source. Soil samples were taken from ecologically well-conserved areas, including a mountain swamp around the demilitarized zone (Yongneup), two ecoparks (Upo and the Mujechi bog), and ten representative islands around the Korean peninsula (Jejudo, Daecheongdo, Socheongdo, Baekryeongdo, Ulrungdo, Dokdo, Geomundo, Hongdo, Huksando and Yeonpyeongdo). All of the 135 bacteria produced nitrogen gas from the denitrification medium, and were proved to be nitrate reductase positive by API-BioLog tests. Phylogenetic analysis using 16S rDNA sequences revealed that the 135 bacteria consisted of 44 different genera. Along with the most prominent, Proteobacteria (87.4%), we identified denitrifying bacteria from Firmicutes (9.4%), Actinobacteria (2.4%), and Bacteroidetes (0.8%). Physiological analyses of the 44 representative denitrifying bacteria, under various pH levels, growth temperatures and salt stresses, revealed 12 favorable denitrifying strains for soil bioremediation.

• Korean Journal of Microbiology
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• v.45 no.2
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• pp.119-125
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• 2009

To understand the ecological function of heterotrophic bacterial community in water column of large freshwater lakes in the permafrost zone, we investigated the structure and function of bacterial community in Lake Khuvsgul, Mongolia. Species composition of overall bacterial community was analyzed by denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments, and bacteria that can be cultured at 10oC were isolated and characterized. Based on the depth profile of environmental parameters, thermocline and chemocline were recognized at the 5~10 m zone of the water column. The stratified DGGE profile indicated that the discontinuity of water properties might influence the structure of bacterial community: band profiles in the 0~5 m zone were diverse with large change by depth, but the profile was relatively stable at the $\geq$10 m zone, with predominance of the band identified as Acidovorax facilis. Bacterial cultures were screened for protease, cellulase, amylase and lipase activity, and 23 isolates were selected for high activity of the hydrolytic enzymes. The isolates were identified based on their 16S rRNA gene sequences. In the surface water (zero meter depth), Acidovorax defluvii and Sphingobacterium faecium with high cellulase activity were present. Flavobacterium succinicans, Mycoplana bullata and A. facilis were stably predominant isolates at 2 m, 5 m, and $\geq$10 m depths, respectively. F. succinicans isolates showed high protease activity while M. bullata isolates showed moderate levels of protease and celluase activity. A. facilis isolates showed either cellulase or lipase activity, exclusively to each other. According to the profile of growth rates of the isolates in the temperature range of $0\sim42^{\circ}C$, the surface-zone (0~5 m) isolates were facultative psychrophiles while isolates from $\geq$10 m depth were typical mesophiles. This stratification is believed to be due to stratified availability of organic materials to the bacterial decomposers. In the water column below the chemoline, the environment is extremely oligotrophic so that the trait of rapid growth in low temperature might not be demanded by deep-lake decomposers. The stratified distribution of community composition and decomposer activity in Lake Khuvsgul implies that ecological functions of bacterial community in lakes of cold region are sharply divided by water column stratification.

• Journal of Marine Life Science
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• v.6 no.1
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• pp.9-22
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• 2021

We determined the composition of water and sediment bacterial assemblages from the East Sea using 16S rRNA gene sequencing. Total bacterial reads were greater in surface waters (<100 m) than in deep seawaters (>500 m) and sediments. However, total OTUs, bacterial diversity, and evenness were greater in deep seawaters than in surface waters with those in the sediment comparable to the deep sea waters. Proteobacteria was the most dominant bacterial phylum comprising 67.3% of the total sequence reads followed by Bacteriodetes (15.8%). Planctomycetes, Verrucomicrobia, and Actinobacteria followed all together consisting of only 8.1% of the total sequence. Candidatus Pelagibacter ubique considered oligotrophic bacteria, and Planctomycetes copiotrophic bacteria showed an opposite distribution in the surface waters, suggesting a potentially direct competition for available resources by these bacteria with different traits. The bacterial community in the warm surface waters were well separated from the other deep cold seawater and sediment samples. The bacteria exclusively associated with deep sea waters was Actinobacteriacea, known to be prevalent in the deep photic zone. The bacterial group Chromatiales and Lutibacter were those exclusively associated with the sediment samples. The overall bacterial community showed similarities in the horizontal rather than vertical direction in the East Sea.

• The Korean Journal of Ecology
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• v.28 no.2
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• pp.85-92
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• 2005

This study emphasizes syntaxonomy and syndynamics of intermediate (Zwischen) moor (area: 14,000 $m^2$) at Mt. Shinbul in Yangsan, southeastern Korean Peninsula. A total of 105 vascular plant species including 26 monitor-species were recorded. Analysis by the $Z\"{u}rich$-Montpellier School's method distinguished eight vegetation units: Eleocharitis-Blyxetum echinospermae ass. nov., Eriocaulon sikokianum-Utricularia racemosa community, Eleocharis wichurai-Molinia japonica community, Platanthero-Molinietum japonicas, Miscanthus sinensis for. purpurascens community, Tripterygium regelii community, Symplocos chinensis-Quercus mongolica community, Symplocos chinensis-Quercus dentata community. PCoA (Principal Coordinates Analysis) shows that vegetation changes and distributional aspects are associated with both moisture condition and sunlight on the ground layer and soil nutrient level (mesotrophic to oligotrophic). Most important to Molinietea japonicas being representative intermediate moor vegetation at the southeasternmost fringe of the Korean Peninsula is the local cooling effect by mountainous cloud and mist zone resulting in shorter and wetter growing season. The Yangsan moor vegetation was compared with earlier descriptions of related Mujechi moor from anthropogenic and natural moor vegetations.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.13 no.3
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• pp.178-189
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• 2008

The distribution of inorganic nutrients and their remineralization ratio in the divergence zone ($7^{\circ}{\sim}10.5^{\circ}N$) of the northeastern Pacific were investigated from July 2003 to July 2007. A divergence zone along the boundary of the North Equatorial Counter Current (NECC) and North Equatorial Current (NEC) at $10^{\circ}N$ was observed in July 2007 when the La Nina event and divergence-related upwelling was strong. The mean depth of oligotrophic surface mixed layer in the divergence zone was 46, 61, and 30 m in July 2003, August 2005, and July 2007, respectively. Below the surface mixed layer, a nutricline was clearly observed. The depth integrated value of nitrate including nitrite (DIVn) in the upper layer($0{\sim}100$ m depth) ranged from 5.51 to 21.71 $gN/m^2$(mean 12.82 $gN/m^2$) in July 2003, from 5.62 to 8.46 $gN/m^2$ (mean 7.15 $gN/m^2$) in August 2005, and from 8.98 to 27.80 $gN/m^2$(mean 21.12 $gN/m^2$) in July 2007. The maximum DIVn was observed at the divergence zone. The distributions of phosphate(DIVp) and silicate(DIVsi) were similar to that of DIVn and the DIVn/DIVsi ratio was $0.87{\pm}0.11$ in the upper layer. The limiting nutrient for phytoplankton growth in the study area was identified as nitrogen(N/P ratio=14.6). The nitrate (including nitrite) concentrations were lower in the region mainly affected by NEC than in the region affected by NECC. The study area of low silicate concentrations was also considered to be Si-limiting environment. The remineralization ratios of nutrients were $P/N/-O_2=1/14.6{\pm}1.1/100.4{\pm}8.8(23.44{\leq}Sigma-{\theta}{\leq}26.38)$ in the study area. These ratios suggested remineralization process in the surface layer of divergence zone.