• Journal of Microbiology and Biotechnology
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• 제29권10호
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• pp.1495-1505
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• 2019

The Burkholderia cepacia complex (BCC) is capable of remaining viable in low-nutrient environments and harsh conditions, posing a contamination risk in non-sterile pharmaceutical products as well as a challenge for detection. To develop optimal recovery methods to detect BCC, three oligotrophic media were evaluated and compared with nutrient media for the recovery of BCC from autoclaved distilled water or antiseptic solutions. Serial dilutions ($10^{-1}$ to $10^{-12}CFU/ml$) of 20 BCC strains were inoculated into autoclaved distilled water and stored at $6^{\circ}C$, $23^{\circ}C$ and $42^{\circ}C$ for 42 days. Six suspensions of Burkholderia cenocepacia were used to inoculate aqueous solutions containing $5{\mu}g/ml$ and $50{\mu}g/ml$ chlorhexidine gluconate (CHX) and $10{\mu}g/ml$ benzalkonium chloride (BZK), and stored at $23^{\circ}C$ for a further 199 days. Nutrient media such as Tryptic Soy Agar (TSA) or Tryptic Soy Broth (TSB), oligotrophic media (1/10 strength TSA or TSB, Reasoner's $2^{nd}$ Agar [R2A] or Reasoner's $2^{nd}$ Broth [R2AB], and 1/3 strength R2A or R2AB) were compared by inoculating these media with BCC from autoclaved distilled water and from antiseptic samples. The recovery of BCC in water or antiseptics was higher in culture broth than on solid media. Oligotrophic medium showed a higher recovery efficiency than TSA or TSB for the detection of 20 BCC samples. Results from multiple comparisons allowed us to directly identify significant differences between TSA or TSB and oligotrophic media. An oligotrophic medium pre-enrichment resuscitation step is offered for the United States Pharmacopeia (USP) proposed compendial test method for BCC detection.

• 한국미생물·생명공학회지
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• 제28권4호
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• pp.239-241
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• 2000

From 5 forest soil samples, the isolation frequency of oligotrophic Actinomycetes was investigated with nutrient and minimal media. The frequency of soil Actinomycetes by the minimal media. The frequency of soil Actinomycetes by the minimal media of DHV, WA, BA and NA was similar to the value by HV nutrient medium. In addition, different Actinomycetes were isolated from all the media used in this experiment and then their growth were tested on nutrient (Bennett's agar) and minimal media(WA). In consequent, the number of different Actinomycetes from minimal media was 26.1 strains, whereas the number of from nutrient medium (HV) was 26.6 strains. Furthermore, the percentage of facultative and obligate strains among the oligotrophic Actinomycetes was 90% and 10%, respectively.

• The Plant Pathology Journal
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• 제28권1호
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• pp.68-74
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• 2012

Biocontrol microbes have mainly been screened among large collections of microorganisms $via.$ nutrient-rich $in$ $vitro$ assays to identify novel and effective isolates. However, thus far, isolates from only a few genera, mainly spore-forming bacilli, have been commercially developed. In order to isolate field-effective biocontrol microbes, we screened for more than 200 oligotrophic bacterial strains, isolated from rhizospheres of various soil samples in Korea, which induced systemic resistance against the soft-rot disease caused by $Pectobacterium$ $carotovorum$ SCC1; we subsequently conducted in $planta$ bioassay screening. Two oligotrophic bacterial strains were selected for induced systemic disease resistance against the $Tobacco$ $Mosaic$ $Virus$ and the gray mold disease caused by $Botrytis$ $cinerea$. The oligotrophic bacterial strains were identified as $Pseudomonas$ $manteilii$ B001 and $Bacillus$ $cereus$ C003 by biochemical analysis and the phylogenetic analysis of the 16S rRNA sequence. These bacterial strains did not exhibit any antifungal activities against plant pathogenic fungi but evidenced several other beneficial biocontrol traits, including phosphate solubilization and gelatin utilization. Collectively, our results indicate that the isolated oligotrophic bacterial strains possessing induced systemic disease resistance could provide useful tools as effective biopesticides and might be successfully used as cost-effective and preventive biocontrol agents in the field.

• 미생물학회지
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• 제44권4호
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• pp.352-357
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• 2008

난배양성 세균의 배양효율을 증진시킬 수 있다고 보고된 배지 첨가물들이 포함된 다양한 종류의 빈영양 배지들을 대상으로 배양효율을 비교평가하고 최적의 배양조건을 모색하였으며, 평가된 배지를 사용하여 토양시료로부터 순수 분리된 난배양성 세균들의 계통분류학적 위치를 분석하였다. 배지 첨가물로는 토양의 화학적 조성을 반영하기 위한 토양추출액(soil extract), 부식질산의 유사체(humic acid analogue)인 anthraquinone disulfonate, 정족수인식 신호물질(quorum-signaling compounds)인 acyl homoserine lactones, 과산화물(exogenous peroxide)로부터 세균을 보호하기 위한 catalase가 사용되었다. $CO_2$ 과분압(5%, v/v) 조건에서 60일간 배양하였을 때, catalase가 첨가된 배지가 가장 높은 세균집락수(CFU)를 보였다. 이 배지로부터 147개의 균주를 무작위적으로 선택하여 순수분리하고 16S rRNA 유전자의 염기서열을 이용한 계통학적 분석을 실시한 결과, 순수분리된 균주의 약30%가 이전에 배양 또는 발견된 적이 없는 새로운 종(species)에 속하며, 이 중 약 25%는 새로운 과(family)에 속하는 세균일 가능성이 있는 것으로 나타났다. 또한 난배양성 토양세균으로 알려진 phylum Acidobacteria에 속하는 세균들이 성공적으로 배양되었다는 결과를 고려하면, 본 연구에서 사용된 배지 및 배양조건은 난배양성 토양세균의 배양은 물론 신 분류군의 발굴에도 큰 기여를 할 것으로 기대된다.

• 생명과학회지
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• 제10권1호
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• pp.52-60
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• 2000

Up to now, there have been done much efforts in regard to nitrate reductase activity (NRA) of dicotyledonous herbs and important crop monocotyledons, but few to wild plants having canopy structure such as Carex. The objective of the present study are to determine: a) the optimum in vivo NR assay conditions for leaf samples of Carex species, b) changes of NRA according to section within leaf and leaf ages, c) diurnal variations. Optimized assay media of each Carex species were determined. NRA of C. rostrata adapted to oligotrophic habitats is readily saturated at lower substrate concentration than those of C. distans and C. gracilis, adapted to meso- and eutrophic habitats, respectively. All Carex species investigated have higher NRA in leaves than in roots. NRA of all species showed maximal values at the middle section of each leaf and in the youngest fully expanded leaves. Compared to C. gracilis, NR in leaves of C. distans was adapted readily to the light period. On the whole, Carex showed rather delayed diurnal variation. Even if the in vivo nitrate reductase assay based on nitrite estimation does not give an accurate estimation of total nitrate reduced, it still serves as a useful tool to find out relative differences in varying environmental conditions. Additionally, in vivo RNA measurements are helpful to understand nitrate reduction and basic nitrogen metabolism of Carex species having different canopy structure.

• 자원환경지질
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• 제38권5호
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• pp.525-534
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• 2005

지질매체에서 흔하게 발견되는 호기성 박테리아인 Pseudomonas aeuginosa에 대하여 영양분을 공급하지 않은 상태에서 As(V) 및 As(III) 흡착실험을 수행하였다. As(111)의 경우 P. aeruginosa에 의한 소규모의 흡착이 관찰된 반면, As(V)는 효과적인 흡착이 적용되지 않음을 확인할 수 있었다 이는 As(V)는 수용액 상태에서 음전하 화합물로 존재하고 박테리아 표면 역시 음전하를 띠고 있기 때문에 상호 인력이 작용하지 않기 때문인 것으로 파악된다. 그러나 바이오필름 상태의 박테리아는 많은 양의 용존 As(V)를 As(III)로 환원하는 것으로 나타났다. 이는 빈영양 환경인 대부분의 지질환경에서도 미생물이 용존 비소의 거동에 미치는 영향이 크다는 것을 의미한다. 다양한 중금속으로 오염된 지하수를 처리하기 위하여 구축된 미생물 반응벽체는 비소의 흡착을 촉진하기보다는 오히려 비소의 독성과 이동도를 증가시키는 부의 효과를 유도할 수도 있다.