• Title/Summary/Keyword: nrITS

Search Result 152, Processing Time 0.023 seconds

A phylogenetic analysis of the genus Pilea (Urticaceae) using nrDNA and cpDNA sequences (한국산 물통이속(Pilea) 식물의 nrDNA, cpDNA를 통한 계통분석)

  • Moon, Ae-Ra;Park, Jeong-Mi;Jang, Chang-Gee
    • Korean Journal of Plant Taxonomy
    • /
    • v.45 no.2
    • /
    • pp.158-168
    • /
    • 2015
  • A study of the genus Pilea in Korea including five taxa was carried out using molecular phylogenetic methods. The majority of members of the genus Pilea in Korea are annual herbs, and they live in moist habitats, flowering in summer and fruiting in autumn. The results of a phylogenetic analysis using nrDNA and cpDNA supported the recognition of P. japonica, P. peploides, and P. taquetii. Pilea taquetii from Mt. Sanbangsan in Jeju was nested within P. hamaoi and P. mongolica clade instead of the P. taquetii clade, with P. taquetii from Mt. Jirisan also separated from the P. taquetii clade. This indicates that the separation is not geographical isolation, but is instead related to taxonomic problems. Therefore, further study of the P. taquetii group is necessary.

Variation of nuclear ribosomal ITS sequences of Polygonum section Persicaria (Polygonaceae) in Korea (한국산 여뀌속 Persicaria절(마디풀과)의 핵 리보오솜 ITS 염기서열 변이)

  • Kwak, Myounghai;Kim, Min-Ha;Won, Hyosig;Park, Chong-Wook
    • Korean Journal of Plant Taxonomy
    • /
    • v.36 no.1
    • /
    • pp.21-40
    • /
    • 2006
  • We examined nrDNA ITS sequences from 16 taxa of Polygonum sect. Persicaria(Polygonaceae) in Korea to infer relationships among the taxa within the section. A neighbor-joining tree obtained from the analysis of the ITS sequences suggest that the ITS region was useful inferring the phylogenetic relationships among the taxa. The neighbor-joining tree indicates that P.amphibium is clearly separated from the other Korean taxa. The tree also reveals the presence of five major groups in the Korean taxa of the section; 1) P. lapathifolium var. lapathifolium, 2) P. persicaria and P. viscoferum, 3) P. orientale and P. viscosum, 4) P. japonicum and 5) a group including the remaining taxa. these relationships depicted on the ITS tree are largely congruent with those inferred from morphological and anatomical characters.

Molecular Marker to Identify and Origin of Cnidii Rhizoma from Korea and China (천궁의 기원과 식별을 위한 분자마커)

  • Song, Im-Geun;An, Bo-Ram;Seo, Bu-Il;Park, Seon-Joo
    • The Korea Journal of Herbology
    • /
    • v.24 no.4
    • /
    • pp.1-8
    • /
    • 2009
  • Objectives : This study was carried out to discriminate origin and molecular marker of oriental medicine "Cnidii Rhizoma" be circulated between Korea and China, which is difficult to discriminate from morphological distinction because of a fragmental materials of roots. Methods : Materials were collected randomly from a medicinal herb markets in Korea and China and be analyzed with ITS (internal transcribed spacer) regions of nuclear ribosomal DNA (nrDNA). Results : As a results, ITS regions of nrDNA was shown to be identify as three molecular markers. "Cnidii Rhizoma" was made up syster group of the genus Ligusticum L. and divided into three groups with "Tou-chun-gung", "IL-chun-gung" and "China-chun-gung". Conclusions : From the analysis of ITS regions of nrDNA, we presumed that it is the same origin of "Cnidii Rhizoma" from Korea and China because of phylogenetic tree consisted of sister groups with the genus Ligusticum than the genus Cnidium.

A Study on Arterial Road Network Improvement Based on Networking Analysis (Networking 기반의 간선도로의 망기능 분석방법론 연구)

  • Jung, Kabchae;Kang, Kyeong Pyo;Kim, Jung Wan
    • Journal of Korean Society of Transportation
    • /
    • v.31 no.1
    • /
    • pp.47-56
    • /
    • 2013
  • The present study proposed a methodology to analyze the networking efficiency of arterial road networks. The methodology was motivated to design three-dimensional networks and to analyze the networking ability quantitatively, which is a novel approach compared to existing methods depending on the two-dimensional network definition and the qualitative analysis for improving arterial road networks. The method considered the interdependence between high-level freeways and low-level highways, the ITS-based information for traffic and road conditions, and the physical networking. These three factors were quantified by a networking index (NI), and the networking efficiency was measured by a networking rate (NR). The present study proved that the networking efficiency (NR) was influenced by travel information sharing (i.e., ITS) and physical factors. This supports the fact that the integrated improvements of physical and ITS factors are necessary for an arterial road. The proposed method was applied for an actual arterial road network. It was found that the nation-wide NR was higher than that for the metropolitan area, which might be due to the difficulty in switching between high- and low-level networks and the lack of ITS functions in the metropolitan area.

The complete plastid genome and nuclear ribosomal transcription unit sequences of Spiraea prunifolia f. simpliciflora (Rosaceae)

  • Jeongjin CHOI;Wonhee KIM;Jee Young PARK;Jong-Soo KANG;Tae-Jin YANG
    • Korean Journal of Plant Taxonomy
    • /
    • v.53 no.1
    • /
    • pp.32-37
    • /
    • 2023
  • Spiraea prunifolia f. simpliciflora Nakai is a perennial shrub widely used for horticultural and medicinal purposes. We simultaneously obtained the complete plastid genome (plastome) and nuclear ribosomal gene transcription units, 45S nuclear ribosomal DNA (nrDNA) and 5S nrDNA of S. prunifolia f. simpliciflora, using Illumina short-read data. The plastome is 155,984 bp in length with a canonical quadripartite structure consisting of 84,417 bp of a large single-copy region, 18,887 bp of a short single-copy region, and 26,340 bp of two inverted repeat regions. Overall, a total of 113 genes (79 protein-coding genes, 30 tRNAs, and four rRNAs) were annotated in the plastome. The 45S nrDNA transcription unit is 5,848 bp in length: 1,809 bp, 161 bp, and 3,397 bp for 18S, 5.8S, and 26S, respectively, and 261 bp and 220 bp for internal transcribed spacer (ITS) 1 and ITS 2 regions, respectively. The 5S nrDNA unit is 512 bp, including 121 bp of 5S rRNA and 391 bp of intergenic spacer regions. Phylogenetic analyses showed that the genus Spiraea was monophyletic and sister to the clade of Sibiraea angustata, Petrophytum caespitosum and Kelseya uniflora. Within the genus Spiraea, the sections Calospira and Spiraea were monophyletic, but the sect. Glomerati was nested within the sect. Chamaedryon. In the sect. Glomerati, S. prunifolia f. simpliciflora formed a subclade with S. media, and the subclade was sister to S. thunbergii and S. mongolica. The close relationship between S. prunifolia f. simpliciflora and S. media was also supported by the nrDNA phylogeny, indicating that the plastome and nrDNA sequences assembled in this study belong to the genus Spiraea. The newly reported complete plastome and nrDNA transcription unit sequences of S. prunifolia f. simpliciflora provide useful information for further phylogenetic and evolutionary studies of the genus Spiraea, as well as the family Rosaceae.

A Study on Dynamic Properties for the Filler Compounded NR Vulcanizates ( I ) (각종(各種) 충전제(充塡劑)를 배합(配合)한 천연(天然)고무 강황체(加黃體)의 특성(特性)에 관(關)한 연구(硏究) ( I )(동적(動的) 특성(特性)에 관(關)하여))

  • Choi, Jae-Woon;Herh, Dong-Sub;Hong, Chung-Sug
    • Elastomers and Composites
    • /
    • v.19 no.4
    • /
    • pp.231-242
    • /
    • 1984
  • NR vulcanizate has its unigue characteristic of cushion, silence, vibration energy absorbtion etc. By reason of the above captioned characters, The vulcanizate has been widely applied to production of auto tires, belts and engine mounts, The purpose of this study is to examine the effect of rubber-filler attachments on the various dynamic properties of the NR vulcanizates. For this study, the elastic modulus and damping values are examined by means of the (RDS) the Good Rich Flexometer. The results of this study showed as follows. The damping values of the vulcaniz ates in the elastic region showed showed strong relations the damping values and the filler characteristics. The vulvanizates filled with carbon black had higher damping values than the vulcanizates loaded with inorganic filler. The Goodrich Flexometer test showed that build up for the silica filled NR vulcanizates was higher than those for which contained other fillers.

  • PDF

Structural Characterization of Non-reducing Oligosaccharide Produced by Arthrobacter crystallopoietes N-08

  • Bae, Bum-Sun;Shin, Kwang-Soon;Lee, Ho
    • Food Science and Biotechnology
    • /
    • v.18 no.2
    • /
    • pp.519-525
    • /
    • 2009
  • A bacterial strain (Strain N-08) capable of extracellularly producing high level of non-reducing oligosaccharide (NR-OS) isolated from soil. The strain was identified phylogenetically by 16S rDNA sequence analysis and found to be very close to Arthrobacter crystallopoietes. The high production of NR-OS was observed in the basal culture medium containing maltose as a sole carbon source. The NR-OS in culture supernatant was purified by glucoamylase treatment and Dowex-1 (OH.) ion exchange chromatography and its structure was characterized. This oligosaccharide consisted of only glucose. Methylation analysis indicated that this fraction was composed mainly of non-reducing terminal glucopyranoside. Matrixassisted laser-induced/ionization time-of-flight (MALDI-TOF) and electrospray ionization-mass spectrometry (ESI-MS)/MS analyses suggested that this oligosaccharide comprised non-reducing disaccharide unit with 1,1-glucosidic linkage. When this disaccharide was analyzed by $^1H$-NMR and $^{13}C$-NMR, it gave the same signals with $\alpha$-D-glucopyranosyl-(1,1)-$\alpha$-Dglucopyranoside. These results indicated that the NR-OS produced by A. crystallopoietes N-08 was ${\alpha}1$,${\alpha}1$-trehalose. This is the first report of the trehalose which can be produced directly from maltose by A. crystallopoietes N-08.

Study on Analysis of Vulcanized Rubber by Pyrolysis-Gas Chromatography(I) (Vulcanizates of NR BR and SBR) (Pyrolysis-Gas Chromatography를 이용한 가황 고무의 열분석에 관한연구(I) (NR, BR 및 SBR의 가황체))

  • Huh, D.S.;Kim, J.S.;Kim, K.J.;Ahn, B.K.;Suh, S.K.;Han, O.K.
    • Elastomers and Composites
    • /
    • v.22 no.1
    • /
    • pp.11-19
    • /
    • 1987
  • A coil pyrolyzer and processor-controlled gas chromatograph were used for analysis of rubber for compounding ratio of the single and blend rubber vlucanizates. Variables such as sample size, pyrolysis temperature, time allowed for pyrolysis, the column packing material, its length and programmable temperature for gas chromatography were examined to obtain optimum condition for application to NR, BR and SBR blends. By application fixed conditions, three kinds of standard curves were finally obtained from thirty samples of blend vulcanizates which were prepared in the pilot plant, NIRI. It is possible to determine rubber composition and their ratio in NR, BR and SBR products by pyrolysis.

  • PDF

Analysis of electrochemical double-layer capacitors using a Natural Rubber-Zn based polymer electrolyte

  • Nanditha Rajapaksha;Kumudu S. Perera;Kamal P. Vidanapathirana
    • Advances in Energy Research
    • /
    • v.8 no.1
    • /
    • pp.41-57
    • /
    • 2022
  • Electrochemical double-layer capacitors (EDLCs) based on solid polymer electrolytes (SPEs) have gained an immense recognition in the present world due to their unique properties. This study is about preparing and characterizing EDLCs using a natural rubber (NR) based SPE with natural graphite (NG) electrodes. NR electrolyte was consisted with 49% methyl grafted natural rubber (MG49) and zinc trifluoromethanesulfonate ((Zn(CF3SO3)2-ZnTF). It was characterized using electrochemical impedance spectroscopy (EIS) test, dc polarization test and linear sweep voltammetry (LSV) test. NG electrodes were made using a slurry of NG and acetone. EIS test, cyclic voltammetry (CV) test and galvanostatic charge discharge (GCD) test have been done to characterize the EDLC. Optimized electrolyte composition with NR: 0.6 ZnTF (weight basis) exhibited a conductivity of 0.6 x 10-4 Scm-1 at room temperature. Conductivity was predominantly due to ions. The electrochemical stability window was found to be from 0.25 V to 2.500 V. Electrolyte was sandwiched between two identical NG electrodes to fabricate an EDLC. Single electrode specific capacitance was about 2.26 Fg-1 whereas the single electrode discharge capacitance was about 1.17 Fg-1. The EDLC with this novel NR-ZnTF based SPE evidences its suitability to be used for different applications with further improvement.

Migration of Antidegradants to the Surface in NR Vulcanizates: Influence of Content of Carbon Black

  • 최성신
    • Bulletin of the Korean Chemical Society
    • /
    • v.19 no.2
    • /
    • pp.170-174
    • /
    • 1998
  • Migration properties of antidegradants to the surface in NR vulcanizates containing carbon black of 30, 50, and 70 phr were studied using the migration-generating equipment with a vacuum technique. The migration was carried out at 60, 80, and 100 ℃ for 20 h. BHT, IPPD, HPPD, and wax were used as migrants. IPPD migrates faster than the other migrants. Amounts of BHT, IPPD, and HPPD that migrated at 60 and 80 ℃ decrease as the content of carbon black in the vulcanizate increases. Migrations of antidegradants in the NR vulcanizate containing carbon black of 50 phr are faster than those containing carbon black of 30 and 70 phr at 100 ℃. Although n-C23H48 is heavier than HPPD, it migrates faster than HPPD and even faster than BHT at 100 ℃. Influencing factors of carbon black on the migrations are its porous structure and polar functional groups on the surface.