• Title/Summary/Keyword: multivariate analysis of variation

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The Variation of Germination, Growth and Leaf Form of Open-Pollinated Progenies of Cornus kousa Buerger ex Miquel in Korea (산딸나무(Cornus kousa) 풍매차대(風媒次代)의 발아(發芽), 생장(生長)및 엽형(葉型) 변이(變異))

  • Song, Jeong-Ho;Goo, Young-Bon;Han, Sim-Hee;Yang, Byeung-Hoon;Park, Hyung-Soon
    • Journal of Korean Society of Forest Science
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    • v.95 no.3
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    • pp.261-267
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    • 2006
  • A nursery trial comprising 109 progenies of 5 populations of Cornus kousa was analysed using multivariate analysis of 12 quantitative traits (growth and leaf form). The aim of this study was to examine geographic variation of the species based on the single, existing nursery trial to support a genetic resource conservation plan of Cornus kousa in Korea. Nested Anova showed that there were statistically significant differences among populations as well as among families within populations in all 12 quantitative traits. In 10 of 12 traits, variance components among families within populations were higher than those among populations. Cluster analysis using complete linkage method showed three groups to Euclidean distance 0.8. Among principal components, primary 2 principal components appeared to be major variables because of the loading contribution of 91.9%. The first contribution component was maximum width, vein number, blade length/petiole length and upper 1/3 width lower 1/3 width; the second one was height, diameter at root collar, blade length, upper 1/3 width, petiole length and petiole length/vein number, respectively. But all characters showed no significant difference with the pattern of geographic distribution.

The Variation of Leaf Form of Rare Endemic Berchemia berchemiaefolia Populations (희귀수종(稀貴樹種) 망개나무 자생집단(自生集團)의 엽형변이(葉型變異))

  • Song, Jeong-Ho;Lee, Jung-Joo;Kang, Kyu-Suk;Hur, Seong-Doo
    • Journal of Korean Society of Forest Science
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    • v.97 no.4
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    • pp.431-436
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    • 2008
  • 7 populations of rare endemic Berchemia berchemiaefolia were analysed using multivariate analysis for 9 characteristics of leaf morphology. The aim of this study was to examine geographic variation to support a genetic resource conservation plan of B. berchemiaefolia in Korea. In the morphological characters, nine characters of leaf were 10.25 cm (blade length), 4.10 cm (maximum width), 2.52 (blade length/maximum width), 3.22 cm (upper 1/3 width), 3.42 cm (lower 1/3 width), 0.95 (upper 1/3 width/lower 1/3 width), 1.24 cm (petiole length), 8.91 (blade length/petiole length), 8.16ea (vein number), respectively. Nested anova showed that were statistically significant differences among populations as well as among individuals within populations in all 9 quantitative characters. In 7 of 9 characters, variance components among individuals within populations were higher than those among populations. Cluster analysis using complete linkage method showed two groups (Chungbuk and Gyeongbuk districts) to Euclidean distance 1.2. Among principal components, primary 3 principal components appeared to be major variables because of the loading contribution of 87.3%. The first contribution was blade length, blade length/maximum width and blade length/petiole length; the second one was maximum width, upper 1/3 width and lower 1/3 width; the third one was petiole length, respectively.

Analysis of spatio-temporal variation on water quality using hidden Markov model (은닉 마코프 모형을 이용한 시공간적 수질 변동성 분석)

  • Jung, Min-Kyu;Cho, Hemie;Kwon, Hyun-Han
    • Proceedings of the Korea Water Resources Association Conference
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    • 2020.06a
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    • pp.111-111
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    • 2020
  • 하천환경과 기후의 변화로 인해 수질오염 과정의 메커니즘이 더욱 복잡해짐에 따라 다양한 요인을 고려한 불확실성 평가 연구가 요구되고 있다. 하천 수질 중에서도 부영양화 문제는 특히 개발로 인한 하천환경 변화 이후 사회 정치적 논점이 되어왔다. 본 연구에서는 지난 7년 동안의 수질 변화의 전반적인 양상을 조사하였으며, 클로로필-a(Chl-a, chlorophyll-a) 농도의 시공간적 의존성의 효과적으로 고려하기 위해 기계학습 기반 분류(classification) 접근법인 다변량 은닉 마코프 모형(MHMM, multivariate hidden Markov model)을 사용하였다. 월 단위 수질 및 수문 자료를 사용하여 Chl-a의 변동성을 군집화하여 수질 상태의 익월 천이확률을 효과적으로 추정하였다. Chl-a와 수질 및 수문기상 조건의 관계를 평가하였으며, 결과적으로 수질 상태의 시공간적 전이가 정확하게 식별되었고 이의 잠재적 원인에 대하여 논의하였다.

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Status of corn diversity in the marginal uplands of sarangani province, the Philippines: implications for conservation and sustainable use

  • Aguilar, Catherine Hazel;Espina, Pamela Grace;Zapico, Florence
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.68-68
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    • 2017
  • The status of corn genetic diversity in the uplands of Sarangani in Southern Philippines was investigated using 12 morphological traits subjected to multivariate statistical analyses. Information about traditional farming, post-harvest and storage practices were also elicited especially in relation to losses of traditional varieties, a phenomenon known as genetic erosion. While a handful of farmers still plant traditional corn varieties in the remotest areas, a significant number had already shifted to genetically modified corn. Furthermore, principal component analysis (PCA) reduced the 12 morphological traits into 5 principal components and identified ear length and ear weight to be major contributors to variation. Cluster Analysis, on the other hand, formed two distinct groups but failed to give information about intra-cluster variability among the 32 collected corn accessions. These results warrant that more informative morphological traits and that molecular markers will be used to obtain a better picture of genetic diversity in Sarangani upland corn. Molecular analysis is also needed to establish genetic identities of these cultivars and to detect gene introgression from GM varieties into the gene pool of farmers' corn varieties. These analyses are imperative for the conservation of traditional corn varieties before they disappear in the Sarangani uplands because of shifting priorities of upland farmers.

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Wing Morphometric Analysis of Psylla elaeagni Complex (Homoptera : Psyllidae) (보리나무이종군의 날개에 대한 수량형태학적 분석 (동시목: 나무이과))

  • Park, Hee-Cheon;Lee, Chang-Eon;Kim, Hoon-Soo
    • Animal Systematics, Evolution and Diversity
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    • no.nspc2
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    • pp.243-250
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    • 1988
  • The wing morphometric characters of P.elaeagni complex feeding on the genus Elaeagnus plants was analysed by the multivariate methods using clustering of generalized distance and discriminant analysis. On the clustering of the species, the effect of sexual differences, seasonal variation and geographic population sensitively appeared . However, four species of this group was precicely divided by the discriminant analysis.

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Phenotypic Characterization and Multivariate Analysis to Explain Body Conformation in Lesser Known Buffalo (Bubalus bubalis) from North India

  • Vohra, V.;Niranjan, S.K.;Mishra, A.K.;Jamuna, V.;Chopra, A.;Sharma, Neelesh;Jeong, Dong Kee
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.3
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    • pp.311-317
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    • 2015
  • Phenotypic characterization and body biometric in 13 traits (height at withers, body length, chest girth, paunch girth, ear length, tail length, length of tail up to switch, face length, face width, horn length, circumference of horn at base, distances between pin bone and hip bone) were recorded in 233 adult Gojri buffaloes from Punjab and Himachal Pradesh states of India. Traits were analysed by using varimax rotated principal component analysis (PCA) with Kaiser Normalization to explain body conformation. PCA revealed four components which explained about 70.9% of the total variation. First component described the general body conformation and explained 31.5% of total variation. It was represented by significant positive high loading of height at wither, body length, heart girth, face length and face width. The communality ranged from 0.83 (hip bone distance) to 0.45 (horn length) and unique factors ranged from 0.16 to 0.55 for all these 13 different biometric traits. Present study suggests that first principal component can be used in the evaluation and comparison of body conformation in buffaloes and thus provides an opportunity to distinguish between early and late maturing to adult, based on a small group of biometric traits to explain body conformation in adult buffaloes.

Ten Year Experience with Surgery and Radiation in the Management of Malignant Major Salivary Gland Tumors

  • Iqbal, Hassan;Bhatti, Abu Bakar Hafeez;Hussain, Raza;Jamshed, Arif
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.5
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    • pp.2195-2199
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    • 2014
  • Background: Despite being rare in incidence, malignant tumors of major salivary glands show diverse histological variation. There are limited data on major salivary gland tumor management and outcome from Pakistan. The objective of this study was to share our experience with management of malignant tumors of major salivary glands. Materials and Methods: Patients who received treatment at Shaukat Khanum Cancer Hospital and Research Center from July 2002 to June 2011 with an underlying diagnosis of a major salivary gland malignancy were included. Patient characteristics and treatment modalities were assessed. Local, regional and distant failures were determined. Disease free survival (DFS) and overall survival (OS) were calculated using Kaplan Meier curves and the Log rank test was used to determine statistical significance. Univariate and multivariate analyses were performed using Cox proportional hazard regression. Results: The parotid gland was the primary site of origin in 104 (80%) patients. Mucoepidermoid carcinoma (43%) and adenoid cystic carcinoma (24%) were the most common histological types. Surgery followed by adjuvant radiation remained the mainstay treatment modality with 81 (62%) patients. Nineteen (15%) patients were treated with surgery alone and 30 (23%) patients with locally advanced surgically inoperable tumors received radiation only. Forty one (32%) patients failed the treatment (local 12, regional 11, locoregional 5, distant 13). The expected 5 year DFS and OS were 65% and 74% respectively. On multivariate analysis, grade was the only independent predictor of DFS and nodal involvement was the only independent predictor of overall survival. Conclusions: Employing existing standards of treatment, comparable survival can be achieved in Pakistani population with major salivary gland malignancies as elsehwere in the world.

Multivariate Analysis of Variation of Growth and Quality Characteristics in Colored Rice Germplasm (유색미 도입 유전자원의 생육 및 품질특성 변이 다변량 분석)

  • Park, Jong-Hyun;Lee, Ji-Yoon;Chun, Jae-Buhm;You, Oh-Jong;Son, Eun-Ho
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.63 no.3
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    • pp.175-185
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    • 2018
  • The aim of this study was to evaluate the variation of growth and quality characteristics in colored rice from 178 accessions and to develop useful, basic rice breeding data by classifying these germplasm characteristics via principal component (PC) analysis. The coefficient of variation of the 178colored rice accessions were the highest for panicle length (PL) and protein contents, followed by length-width ratio (LWR), 1000-grain weight (TGW), culm length (CL), and amylose contents, whereas the lowest was for the number of panicles per hill (NP), which is a yield component. The results from the PC analysis exhibited eigenvalues and contributions respective to each PC as follows: PC1, 2.06 and 29.49%; PC2, 1.31 and 18.75%; PC3, 1.21 and 17.36%; PC4, 1.01 and 14.38%. The eigenvalues of four PCs were over 1.0, and their cumulative contributions were 79.98%, which completes the necessary condition for evaluation of the 178 colored rice accessions. Cluster analysis showed cluster I as the largest, which included 79 accessions, while clusters II, III, IV, V, VI, and VII comprised 46, 19, 13, 4, 8, and 9 accessions, respectively. Moreover, dark brown accessions were dispersed in clusters I and II, and many resources of purple seed coat color were found in clusters V, VI, and VII. Particularly, cluster V had resources of only black and purple seed coat colors. Resources of cluster VII were found to have a relatively small average CL, PL, and LWR; notably, cluster V had the smallest average TGW, and cluster IV the lowest NP but the highest TGW. Finally, considering the yield potential, growth characteristics, heading stage, and color during breeding of colored rice, we obtained the following conclusions: cluster VII is suitable for breeding of colored rice; cross breeding among clusters I, II, and VII has a high yield potential; and it is possible to produce a superior color by cross breeding plants from cluster V and VI.

An Analysis of Small Area Variations of Hospital Services Utilization in Korea (지역간 입원 이용 변이에 관한 연구)

  • Cho, Woo-Hyun;Lee, Sun-Hee;Park, Eun-Cheol;Sohn, Myong-Sei;Kim, Se-Ra
    • Journal of Preventive Medicine and Public Health
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    • v.27 no.3 s.47
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    • pp.609-626
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    • 1994
  • This study was conducted to investigate whether variations in hospital services utilization across small geographic areas in Korea existed, and if so, what factors are responsible for the variation. The claims data of the fiscal year 1992 obtained from the regional health insurance societies were used for the study. Main findings of the research can be summarized as follows: 1 Extremal Quotients (EQ) of hospital expenditure per capita and hospital days per capita were 2.69 and 2.73, and Coefficient of Variation (CV) were 0.14, both, respectively. The EQ and the CV of admission rate were also 2.71, 0.15. The EQ and the CV of expenditure per admission were 1.73, 0.10 and those of hospital days per admission were 1.29, 0.06. All these statistics were statistically significant and this result provides strong evidence for the existence of small area variations. 2. Comparing patterns of variation among areas, the area which showed higher utilization amounts is Chansungp'o. Koje area, whereas the areas which showed lower utilization amounts are Yongju, Changhung, Miryang, Mokp'o, Koch'ang area. 3. Multivariate analytic methods were used to examine factors related to the variation across areas. In terms of the health resource availability variables, beds per capita or physicians per capita were positively associated with all utilization indices. As for the health service market structure variables, the proportion of health care institutions operating for less than f years was positively related to the expenditure per capita, hospital days per capita and expenditure per admission. In addition the proportion of the private health care institutions also had a negative relationship with total utilization amount and admission rate and the proportion of physicians under age 40 was negatively associated with expenditure per capita and expenditure per admission. With regard to the socio-demographic characteristics, proportion of medicaid population was positively related to hospital days per capita, and percentage of paved road was positively related to hospital days per admission. As a conclusion, wide variations existed across small areas in Korea and supply factors were found to be important in explaining the variation.

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Differentiation between Normal and White Striped Turkey Breasts by Visible/Near Infrared Spectroscopy and Multivariate Data Analysis

  • Zaid, Amal;Abu-Khalaf, Nawaf;Mudalal, Samer;Petracci, Massimiliano
    • Food Science of Animal Resources
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    • v.40 no.1
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    • pp.96-105
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    • 2020
  • The appearance of white striations over breast meat is an emerging and growing problem. The main purpose of this study was to employ the reflectance of visible-near infrared (VIS/NIR) spectroscopy to differentiate between normal and white striped turkey breasts. Accordingly, 34 turkey breast fillets were selected representing a different level of white striping (WS) defects (normal, moderate and severe). The findings of VIS/NIR were analyzed by principal component (PC1) analysis (PCA). It was found that the first PC1 for VIS, NIR and VIS/NIR region explained 98%, 97%, and 96% of the total variation, respectively. PCA showed high performance to differentiate normal meat from abnormal meat (moderate and severe WS). In conclusion, the results of this research showed that VIS/NIR spectroscopy was satisfactory to differentiate normal from severe WS turkey fillets by using several quality traits.