• Journal of Life Science
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• v.20 no.11
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• pp.1697-1703
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• 2010

Asarum consists of low-growing herbs and is a genus in the Aristolochiaceae family with species found in the north temperate zones with most species in Asia. We evaluated the nine taxa with the trnL - trnT region of the chloroplast genome to estimate phenotypic relationships within genus Asarum in Korea. Alignment of the DNA sequences required the addition of numerous gaps. Sequence variation within the Asarum was mostly due to nucleotide inserts/deletions, although several indels and inserts were found. Another source of sequence divergence was length variation due to stretches of short repeats that occur at the trnL - trnT region in all the Asarum. A + T content for nine Korean species of genus Asarum ranged between 74.7% and 78.3%. These values were higher than those for the angiosperm alignments of the total trnL and trnT region (64.5~67.1%). Within genus Asarum, A. patens was strikingly different from the others in the three phylogenetic analyses (MP, ML, and NJ). However, some internal nodes were poorly supported. Within Korean Asarum, four species were unsolved portions. Possible reasons for the striking non-congruence between the previous morphological traits and the trnL - trnT based on phylogeny were discussed.

• Korean Journal of Plant Resources
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• v.24 no.1
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• pp.69-75
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• 2011

This study was conducted to investigate the variation of cone, seed and germination characteristics among populations and among individuals within populations of Picea jezoensis(Siebold & Zuccarini) Carriere distributed in Korea. Cone collected from 25 trees in two natural populations(Mt. Jiri and Mt. Dokyu) and their thirteen cone and seed characteristics as well as three germination behaviors were analyzed. Statistical analysis showed significant differences among populations and among individuals within populations in 9 traits except for seed breadth, seed weight, index of seed wing and mean germination time. Generally, morphological variation of cone and seed wings from Mt. Jiri population has smaller and longer than those of Mt. Dokyu population. Percentage of sound seeds and Tetrazolium test from Mt. Jiri population showed 1.79 and 1.87 higher values than Mt. Dokyu population, respectively. The maximum germination percentage was obtained at the optimum temperature of $20^{\circ}C$ and in this case, mean germination time and germination rate showed 7.5 days and 2.9 ea./day, respectively. In seed germination behaviors, percentage(40.7%) and rate(0.90 ea./day) of germination in Mt. Jiri population were more higher and faster than those of Mt. Dokyu population(17.7%, 0.37 ea./day). According to correlation analysis, P. jezoensis populations with small restricted distribution may have been reduced because seed qualities were correlated with increased levels of inbreeding and disproportion flowering.

• Journal of Korean Society of Forest Science
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• v.99 no.3
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• pp.298-303
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• 2010

To explore on the defense strategies against hervivory of Juglans regia and J. mandshurica, morphological characteristics of the leaf, leaf domatia structure and the number, herbivores insects and mites on the leaves, collected from the trees growing in Mt. Chiak, Mt. Cheongtae, Mt. Jungwang, Namyangju-si and Wonju-si, were investigated from May to October, 2009. Domatia of J. mandshurica revealed tuft type, these of J. regia revealed pocket+tuft type. Domatia number per leaflet proved the higher figures, 28.3/leaflet for J. mandshurica, and the lower, 19.6/leaflet for J. regia. Leaf surface trichomes of J. regia revealed stellates only on the domatia structures, and that of J. mandshurica does dense stellates and glandular hairs on the leaf-blade and vein. Predatory mites' number per leaflet proved highly significant differences among tree species, and mean of predatory mites was higher values (4.8/leaflet) in J. mandshurica and lower values (3.5/leaflet) in J. regia. Small amount of nectar are found distal veinparts on the leaf margin of J. mandshurica. Dense glandular hairs on the lower leaf surfaces of J. mandshurica estimates useful strategy against herbivory. It may be possible to breed J. regia for better expression of leaf traits such as dense glandular hairs that increase predator populations and efficacy.

• Journal of Ginseng Research
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• v.41 no.1
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• pp.60-68
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• 2017

Background: Various Panax ginseng cultivars exhibit a range of diversity for morphological and physiological traits. However, there are few studies on diversity of metabolic profiles and genetic background to understand the complex metabolic pathway in ginseng. Methods: To understand the complex metabolic pathway and related genes in ginseng, we tried to conduct integrated analysis of primary metabolite profiles and related gene expression using five ginseng cultivars showing different morphology. We investigated primary metabolite profiles via gas chromatography-mass spectrometry (GC-MS) and analyzed transcriptomes by Illumina sequencing using adventitious roots grown under the same conditions to elucidate the differences in metabolism underlying such genetic diversity. Results: GC-MS analysis revealed that primary metabolite profiling allowed us to classify the five cultivars into three independent groups and the grouping was also explained by eight major primary metabolites as biomarkers. We selected three cultivars (Chunpoong, Cheongsun, and Sunhyang) to represent each group and analyzed their transcriptomes. We inspected 100 unigenes involved in seven primary metabolite biosynthesis pathways and found that 21 unigenes encoding 15 enzymes were differentially expressed among the three cultivars. Integrated analysis of transcriptomes and metabolomes revealed that the ginseng cultivars differ in primary metabolites as well as in the putative genes involved in the complex process of primary metabolic pathways. Conclusion: Our data derived from this integrated analysis provide insights into the underlying complexity of genes and metabolites that co-regulate flux through these pathways in ginseng.

• Korean Journal of Plant Resources
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• v.25 no.4
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• pp.401-406
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• 2012

This study was conducted to investigate the effect of cone protective net and the variation of cone and seed characteristics of a unique and rare dwarf stone pine (Pinus pumila Regel) population in Mt. Seorak which is in the southern peripheral of South Korea. Iron protective net (50 mesh, 25 ${\times}$ 25 cm) was effective in reducing birds and rodents damage to conelet, thereby it was possible to safely collect seed genetic resources. Early July was observed to be the most appropriate season to cover conelet with Iron protective net. P. pumila have ovoid-triangle shaped, wingless seeds and indehiscent cones, seeds dissemination is mainly by the hoarding behavior of nutcrackers and rodents. Statistical analysis showed that there were significant differences among individuals within population, and the mean characteristics of the species were 35.3 mm, 25.6 mm, 1.38, 6.6 g and 39.3 ea in the cone length, cone width, cone index, cone weight and in number of seeds per cone, respectively. Coefficients of variations in seed weight and number of seeds per cone were relatively high (21.7%, 21.5%, respectively) compared to other traits. Based on the correlation analysis between cone characteristics and seed characteristics, the length of cone and seed showed a significant positive correlation with the seed size and the seed weight, but the width and thickness of seed showed a negative correlation with the number of seeds per cone.

• Korean Journal of Ichthyology
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• v.33 no.2
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• pp.117-125
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• 2021

According to the character states of nostrils in the Barbatula species comprising 1,366 specimens collected from the major river system in Korea, distribution pattern of the two Korean Barbatula species was reviewed. The taxonomic character related to nostrils in Barbatula was very stable and two character states (widely separated and closely set) were observed in the present materials. B. toni (Dybowski, 1869) with widely separated nostrils distributes in the streams flowing into the East Sea north of Sokcho, Gangwon-do Province; Eogokcheon Stream, a tributary of Namhangang River; and Anseongcheon Stream, Gyeonggi-do Province, whereas B. nuda (Bleeker, 1864) with closely set occurs in most rivers flowing into the Yellow Sea including Nakdonggang River as well as in the Yangyangnamdaecheon Stream, Gangwon-do Province south to Bangyulcheon Stream, Gyeongbukdo Province, flowing into the East Sea as previously reported with some exception. Especially, both Barbatula species were co-occurred in the Yeongokcheon Stream, Gangwon-do Province and Eogokcheon Stream. The present results will provide a useful guide to study the regional fish fauna or fish community analysis as well as to clarify the taxonomical status of the Korean Barbatula species.

• Journal of Ginseng Research
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• v.43 no.2
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• pp.272-281
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• 2019

Background: Diabetic sensorineural damage is a complication of the sensory neural system, resulting from long-term hyperglycemia. Red ginseng (RG) has shown efficacy for treatment of various diseases, including diabetes mellitus; however, there is little research about its benefit for treating sensorineural damage. Therefore, we aim to evaluate RG efficacy in alloxan-induced diabetic neuromast (AIDN) zebrafish. Methods: In this study, we developed and validated an AIDN zebrafish model. To assess RG effectiveness, we observed morphological changes in live neuromast zebrafish. Also, zebrafish has been observed to have an ultrastructure of hair-cell cilia under scanning electron microscopy. Thus, we recorded these physiological traits to assess hair cell function. Finally, we confirmed that RG promoted neuromast recovery via nerve growth factor signaling pathway markers. Results: First, we established an AIDN zebrafish model. Using this model, we showed via live neuromast imaging that RG fostered recovery of sensorineural damage. Damaged hair cell cilia were recovered in AIDN zebrafish. Furthermore, RG rescued damaged hair cell function through cell membrane ion balance. Conclusion: Our data suggest that RG potentially facilitates recovery in AIDN zebrafish, and its mechanism seems to be promotion of the nerve growth factor pathway through increased expression of topomyosin receptor kinase A, transient receptor potential channel vanilloid subfamily type 1, and mitogen-activated protein kinase phosphorylation.

• Korean Journal of Plant Resources
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• v.34 no.1
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• pp.79-88
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• 2021

This research was conducted to investigate the genetic diversity and select useful accession with agronomic characteristics of garlic (Allium sativum L.). germplasms at Garlic Research Institute in Chungbuk Agricultural Research and Extension Service. Morphological diversity and relationships among 160 germplasms collected from 26 countries were assessed by methods of clustering and principal component analysis. Among 11 types of leaves and bulbs characteristics, emergence days of leaf showed the highest variation with coefficient of variation of 84.8%, and the bulb weight and the number of scales showed higher variability with 24.3%. Correlation analysis based on 11 quantitative traits showed that bulb weight and bulb length have very high positive correlation with bulb quantity. Plant height, leaf length, and number of leaves showed positive correlation with bulb weight as collections with better performance in growth produced large bulb with higher quality. The cluster analysis based on 5 principal components generated 6 clusters with an average distance of 1.6 among clusters. Domestic genetic resources were the largest with 36 species (22.5%) in group II.

• Journal of Mushroom
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• v.19 no.4
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• pp.279-284
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• 2021

Flammulina velutipes is the representative edible mushroom in Korea. It makes up around 18% of the total mushroom production and accounts for about 36% of the total mushroom export. Despite being one of the most industrially important mushroom in Korea, the distribution rate of domestic cultivar was low (~31.6%) in 2020. Therefore, we need a new domestic cultivar with high quality as the main export mushroom. We developed a new white domestic cultivar, 'Seolhan', bred by mating two monokaryotic strains isolated from Baekseung and Woori-1ho. The optimum mycelial growth temperature was 25℃ and Seolhan had higher mycelial growth than the control at 20 and 25℃. In bottle cultivation, the optimum temperature of incubation was from 15℃ to 17℃ and the growth temperature of Seolhan was 7-8℃, which was slightly higher than that of the control. The yield of Seolan was 226.5±8.0 g, an increase of 18.4% compared to the control. The period of primodia formation also was a couple of days ahead. In morphological traits, the pileus of Seolhan was smaller than that of the control, the stipe was thicker, and the color brighter. As the results of replacement culture and genetic diversity test, it was confirmed that Seolhan was genetically different from other white varieties.

• Journal of Korean Society of Forest Science
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• v.111 no.3
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• pp.385-393
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• 2022

The study was carried out in Pocheon-si, Gyeonggi-do from March to December in 2019 to compare and analyze the water use strategies of two co-occurring tree species, Pinus densiflora and Quercus serrata, both native and dominant in Korea's forest ecosystems. Through seasonal changes, we measured environmental variables such as air temperature, relative humidity, precipitation, net radiation, and soil water content. Sap flow densities of P. densiflora (n = 6) and Q. serrata (n = 3) were measured, along with environmental variables. The maximum sa pflow density for Q. serrata almost doubled that of P. densiflora during the growing season, while the maximum sap flow densities in both Q. serrata and P. densiflora peaked in September and August, respectively. Net radiation and vapor pressure deficit, but not air temperature, were the major environmental variables significantly affecting sap flow density. Analysis of hysteresis revealed that P. densiflora exhibited isohydric behavior, while Q. serrata showed anisohydric behavior. Analysis of crown conductance revealed similar trends as sap flow density, i.e., the crown conductance of Q. serrata was twice that of P. densiflora during the growing period. The study compared and analyzed the water use strategies between two co-occurring species. To better understand the underlying mechanisms of water use, more research on both physiological and morphological traits are needed.