• Title/Summary/Keyword: morphological analysis

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Genome-wide association analysis of nine reproduction and morphological traits in three goat breeds from Southern China

  • Xiaoyan, Sun;Jing, Jiang;Gaofu, Wang;Peng, Zhou;Jie, Li;Cancan, Chen;Liangjia, Liu;Nianfu, Li;Yuanyou, Xia;Hangxing, Ren
    • Animal Bioscience
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    • v.36 no.2
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    • pp.191-199
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    • 2023
  • Objective: This study aimed to investigate the significant single nucleotide polymorphisms (SNPs) and genes associated with nine reproduction and morphological traits in three breed populations of Chinese goats. Methods: The genome-wide association of nine reproduction and morphological traits (litter size, nipple number, wattle, skin color, coat color, black dorsal line, beard, beard length, and hind leg hair) were analyzed in three Chinese native goat breeds (n = 336) using an Illumina Goat SNP50 Beadchip. Results: A total of 17 genome-wide or chromosome-wide significant SNPs associated with one reproduction trait (litter size) and six morphological traits (wattle, coat color, black dorsal line, beard, beard length, and hind leg hair) were identified in three Chinese native goat breeds, and the candidate genes were annotated. The significant SNPs and corresponding putative candidate genes for each trait are as follows: two SNPs located on chromosomes 6 (CSN3) and 24 (TCF4) for litter size trait; two SNPs located on chromosome 9 (KATNA1) and 1 (UBASH3A) for wattle trait; three SNPs located on chromosome 26 (SORCS3), 24 (DYM), and 20 (PDE4D) for coat color trait; two SNPs located on chromosome 18 (TCF25) and 15 (CLMP) for black dorsal line trait; four SNPs located on chromosome 8, 2 (PAX3), 5 (PIK3C2G), and 28 (PLA2G12B and OIT3) for beard trait; one SNP located on chromosome 18 (KCNG4) for beard length trait; three SNPs located on chromosome 17 (GLRB and GRIA2), 28 (PGBD5), and 4 for hind leg hair trait. In contrast, there were no SNPs identified for nipple number and skin color. Conclusion: The significant SNPs or genes identified in this study provided novel insights into the genetic mechanism underlying important reproduction and morphological traits of three local goat breeds in Southern China as well as further potential applications for breeding goats.

Low flow Calculation by Stream Morphological Characteristic Parameters in Geum River System (금강수계의 하천형태학적 특성인자에 의한 갈수량 산정)

  • An, Sang-Jin;Yun, Yong-Nam;Gang, Gwan-Won
    • Water for future
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    • v.14 no.1
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    • pp.31-37
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    • 1981
  • It was possible to synthesize the low flow frequency curves for ungauged stations of Geum river system through a correlation analysis using the morphological parameters such as basin area, bnsin relief, total stream length of first-order stream and the 7-day, 10-year low flow.

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Identification of Some Phellinus spp.

  • Shin, Kwang-Soo
    • Mycobiology
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    • v.29 no.4
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    • pp.190-193
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    • 2001
  • Four strains of Phellinus spp. was identified based on internal transcribed spacer(ITS) region of rDNA sequence analysis and morphological characteristics. Basidiocarps of all strains were effused-reflexed and hymenial surface was poroid. Hyphal system was dimitic and basidiospore was globose to ellipsoid. The amplification of ITS regions produced a DNA fragment of 500 to 780 by in all strains examined. The determined sequences were analyzed for the reconstruction of phylogenetic tree. From these results, Phellinus sp. KM-1, KM-2, and KM-4 was identified as P. hartigii, P. baumii, and P. linteus, respectively.

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Antitumoral Compound, MCS-202, an Effector on Proliferation and Morphology of Human Breast Tumor Cell Line, MCF-7 (인체유암세포주 MCF-7의 형태변화와 증식에 영향을 주는 항암활성물질, MCS-202)

  • 이성우;김세은;김항섭;김환묵;이정준;김영호
    • Microbiology and Biotechnology Letters
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    • v.21 no.6
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    • pp.594-599
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    • 1993
  • In the course of screening for microbial metabolites employing human cancer cell line, we identified a mycelial extract of Streptomyces sp. 1365, which are effective on growth inhibition and morphological change of MCF-7, human breasr cancer cell line. By repeased column chromatography and recrystallization process, yellow needle crystals were obtained as an active compound and identified as resistomycin by spectral analysis.

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A Study on the Morphological Analysis of Sperm (정자의 형태학적 특성 분석에 관한 연구)

  • Paick, Jae-Seung;Jeon, Seong-Soo;Kim, Soo-Woong;Yi, Won-Jin;Park, Kwang-Suk
    • Clinical and Experimental Reproductive Medicine
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    • v.24 no.2
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    • pp.153-165
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    • 1997
  • In male reproducible health, fertility and IVF (in-vitro fertilization), semen analysis has been most important. Semen analysis can be divided into concentration, motional and morphological analysis of sperm. The existing method which was developed earlier to analyze semen concentrated on the sperm motility analysis. To provide more useful and precise solutions for clinical problems such as infertility, semen analysis must include sperm morphological analysis. But the traditional tools for semen analysis are subjective, imprecise, inaccurate, difficult to standardize, and difficult to reproduce. Therefore, with the help of development of microcomputers and image processing techniques, we developed a new sperm morphology analyzer to overcome these problems. In this study the agreement on percent normal morphology was studied between different observers and a computerized sperm morphology analyzer on a slide-by-slide basis using strict criteria. Slides from 30 different patients from the SNUH andrology laboratory were selected randomly. Microscopic fields and sperm cells were chosen randomly and percent normal morphology was recorded. The ability of sperm morphology analyzer to repeat the same reading for normal and abnormal cells was studied. The results showed that there was no significant bias between two experienced observers. The limits of agreement were 4.1%${\sim}$-3.8%. The Pearson correlation coefficient between readers was 0.79. Between the manual and sperm morphology analyzer, the same findings were reported. In this experiments the slides were stained by two different methods, PAP and Diff-Quik staining methods. The limits of agreement were 7.2%${\sim}$-5.7% and 6.0%${\sim}$-6.3%, respectively. The Pearson correlation coefficients ware 0.76 and 0.91, respectively. The limits of agreement was tighter below 20% normal forms. In the experiments of repeatability, 52 cells stained by PAP and Diff-Quik staining methods were analyzed three times in succession. Estimating pairwise agreement, the kappa statistic for the pairs were 0.76, 0.81, 0.86, and 0.75, 0.88, 0.88 respectively. In this study it was shown that there was good agreement between manual and computerized assessment of normal and abnormal cells. The repeatability and agreement per slide of computerized sperm morphology analyzer was excellent. The computer's ability to classify normal morphology per slide is promising. Based on results obtained, this system can be of clinical value both in andrology laboratories and IVF units.

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Performance Improvement of Traffic Signal Lights Recognition Based on Adaptive Morphological Analysis (적응적 형태학적 분석에 기초한 신호등 인식률 성능 개선)

  • Kim, Jae-Gon;Kim, Jin-soo
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.19 no.9
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    • pp.2129-2137
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    • 2015
  • Lots of research and development works have been actively focused on the self-driving vehicles, locally and globally. In order to implement the self-driving vehicles, lots of fundamental core technologies need to be successfully developed and, specially, it is noted that traffic lights detection and recognition system is an essential part of the computer vision technologies in the self-driving vehicles. Up to nowadays, most conventional algorithm for detecting and recognizing traffic lights are mainly based on the color signal analysis, but these approaches have limits on the performance improvements that can be achieved due to the color signal noises and environmental situations. In order to overcome the performance limits, this paper introduces the morphological analysis for the traffic lights recognition. That is, by considering the color component analysis and the shape analysis such as rectangles and circles simultaneously, the efficiency of the traffic lights recognitions can be greatly increased. Through several simulations, it is shown that the proposed method can highly improve the recognition rate as well as the mis-recognition rate.

A Method for Compound Noun Extraction to Improve Accuracy of Keyword Analysis of Social Big Data

  • Kim, Hyeon Gyu
    • Journal of the Korea Society of Computer and Information
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    • v.26 no.8
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    • pp.55-63
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    • 2021
  • Since social big data often includes new words or proper nouns, statistical morphological analysis methods have been widely used to process them properly which are based on the frequency of occurrence of each word. However, these methods do not properly recognize compound nouns, and thus have a problem in that the accuracy of keyword extraction is lowered. This paper presents a method to extract compound nouns in keyword analysis of social big data. The proposed method creates a candidate group of compound nouns by combining the words obtained through the morphological analysis step, and extracts compound nouns by examining their frequency of appearance in a given review. Two algorithms have been proposed according to the method of constructing the candidate group, and the performance of each algorithm is expressed and compared with formulas. The comparison result is verified through experiments on real data collected online, where the results also show that the proposed method is suitable for real-time processing.

Morphological Analysis of Wear Particles using Fractal Parameters

  • Cho, Y.S.;Park, H.S.
    • Proceedings of the Korean Society of Tribologists and Lubrication Engineers Conference
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    • 2002.10b
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    • pp.457-458
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    • 2002
  • The fractal dimension is the characteristics that can quantitatively define the irregularity in natural. It is useful in describing the morphology or various rubbed surface for hydraulic piston motor instead of the stylus profiling method. But fractal parameters had not constructed on the morphological characteristic or rubbed surface because of the insufficient knowledge about a conception of fractal dimension. In this study, for the purpose or applying fractal I parameters practically, we have suggested way to establish the morphological characteristic of rubbed surface with fractal parameters, and we carried out an experiment on the lubricant friction and wear by using Ball-ON-Disk type tester. Materials were the brass and the bronze which are used to slipper-pad in the hydraulic piston motor. We searched for fractal parameters or surface structure with the digital image processing, Surface fractal dimension can be determined by sum of intensity difference of surface pixel. Using the image processing and fractal parameters for rubbed surface in the friction and wear test, morphology of rubbed sur race can be effectively obtained by fractal dimensions.

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Alveolar Fricative Sound Errors by the Type of Morpheme in the Spontaneous Speech of 3- and 4-Year-Old Children (자발화에 나타난 형태소 유형에 따른 3-4세 아동의 치경마찰음 오류)

  • Kim, Soo-Jin;Kim, Jung-Mee;Yoon, Mi-Sun;Chang, Moon-Soo;Cha, Jae-Eun
    • Phonetics and Speech Sciences
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    • v.4 no.3
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    • pp.129-136
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    • 2012
  • Korean alveolar fricatives are late-developing speech sounds. Most previous research on phonemes used individual words or pseudo words to produce sounds, but word-level phonological analysis does not always reflect a child's practical articulation ability. Also, there has been limited research on articulation development looking at speech production by grammatical morphemes despite its importance in Korean language. Therefore, this research examines the articulation development and phonological patterns of the /s/ phoneme in terms of morphological types produced in children's spontaneous conversational speech. The subjects were twenty-two typically developing 3- and 4-year-old Koreans. All children showed normal levels in three screening tests: hearing, vocabulary, and articulation. Spontaneous conversational samples were recorded at the children's homes. The results are as follows. The error rates decreased with increasing age in all morphological contexts. Also, error percentages within an age group were significantly lower in lexical morphemes than in grammatical morphemes. The stopping of fricative sounds was the main error pattern in all morphological contexts and reduced as age increased. This research shows that articulation performance can differ significantly by morphological contexts. The present study provides data that can be used to identify the difficult context for articulatory evaluation and therapy of alveolar fricative sounds.

Relationship Between Fractal Dimension and Morphological Features of Cephalosporium acremonium M25 in a 30-1 Bioreactor Culture

  • Lim Jung-Soo;Kim Jung-Mo;Kim Jong-Chae;Kim Chang-Ho;Yang Dae-Ryook;Chang Hyo-Ihl;Kim Seung-Wook
    • Journal of Microbiology and Biotechnology
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    • v.15 no.5
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    • pp.971-976
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    • 2005
  • In a 30-1 bioreactor culture, whole differentiation occurred from 48 h, and then proceeded rapidly. As swollen hyphal fragments and arthrospores increased, cephalosporin C (CPC) production increased exponentially to $1.85\;g/1^{-1}$ at 72 h. To explain the morphological changes of Cephalosporium acremonium M25 more quantitatively, specific differentiation rates and fractal analysis were employed. Specific differentiation rates of morphological factors varied greatly during the period of culture time from 48 h to 72 h, when CPC production increased significantly. Changes of fractal dimensions showed a pattern similar to that of the specific rate of arthrospores. Furthermore, it was inversely related to the specific rate of tips. Overall, it was suggested that the fractal dimension had potential for a new morphological parameter of fungal morphology, showing complex differentiation patterns.