• Molecules and Cells
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• v.45 no.9
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• pp.610-619
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• 2022

Cellular senescence plays a paradoxical role in tumorigenesis through the expression of diverse senescence-associated (SA) secretory phenotypes (SASPs). The heterogeneity of SA gene expression in cancer cells not only promotes cancer stemness but also protects these cells from chemotherapy. Despite the potential correlation between cancer and SA biomarkers, many transcriptional changes across distinct cell populations remain largely unknown. During the past decade, single-cell RNA sequencing (scRNA-seq) technologies have emerged as powerful experimental and analytical tools to dissect such diverse senescence-derived transcriptional changes. Here, we review the recent sequencing efforts that successfully characterized scRNA-seq data obtained from diverse cancer cells and elucidated the role of senescent cells in tumor malignancy. We further highlight the functional implications of SA genes expressed specifically in cancer and stromal cell populations in the tumor microenvironment. Translational research leveraging scRNA-seq profiling of SA genes will facilitate the identification of novel expression patterns underlying cancer susceptibility, providing new therapeutic opportunities in the era of precision medicine.

• Journal of the Korean Magnetic Resonance Society
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• v.26 no.3
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• pp.34-39
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• 2022

The SH3 domain found within a variety of proteins is comprised of generally 60 residues, and participated in protein-protein interactions with proline-rich motifs. Cobll1 was identified as a distinct molecular marker associated with CML progression, and PACSIN2 was discovered a novel Cobll1 binding partner through direct interaction between a SH3 domain of PACSIN2 and three proline-rich motifs of Cobll1. To understand the structural basis of interactions between PACSIN2 and Cobll1, backbone assignments of PACSIN2 SH3 domain were performed. Furthermore, three proline-rich peptides of Cobll1 were titrated to ¹⁵N-labeled PACSIN2 SH3 domain in various ratios. Our chemical shift changes data and conserved SH3 sequence alignment will be helpful to analyze fundamental molecular basis related to the interaction between PACSIN2 and Cobll1.

• Animal Systematics, Evolution and Diversity
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• v.28 no.3
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• pp.178-184
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• 2012

Echinoids were collected at depths of 5-10 m in Munseom, Jeju Island by SCUBA diving on November 23, 2008 and September 15, 2009. Two specimens were identified as Echinometra mathaei (Blainville, 1825) based on morphological characteristics and molecular analyses of mitochondrial cytochrome c oxidase subunit I partial sequences. Echinometra mathaei collected from Korea was redescribed with photographs and was compared with other species from GenBank based on molecular data. Phylogenetic analyses showed that no significant differences were between base sequences of E. mathaei from Korea and that from GenBank. To date, 13 echinoids including this species have been reported from Jeju Island, and 32 echinoids have been recorded in Korea.

• Journal of Microbiology
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• v.35 no.2
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• pp.79-86
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• 1997

For the phylogenetic study of the genus Trichaptum, nuclear ribosomal DNA sequences from eight strains of four Trichaptium species were examined. Phylogenetic trees were constructed using molecular data on 18 rDNA and 5.8S rDNA and thei ITSs. Parsimony analyses of the Trichaptum species showed that T. biforme and T. laricinum made a monophyletic group respectively, suggesting that each species is phylogenetically independent. However, T. abietum represented a polyphyletic group and T. fusco-violaceum formed a polytomous group, suggesting that these species could be in the process of evolutionary differentiation. Examination of base substitutions of the 18S rRNA gene reveals that the C-T transition is most predominant and that there is a stronger transition bias between closely related organisms rather than between distantly related ones.

• Journal of The Korean Astronomical Society
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• v.33 no.3
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• pp.151-158
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• 2000

We conducted a deep CCD observations in V band to obtain stellar density distribution and to determine the distances toward two molecular clouds with anomalous velocity in the Galactic anti-center region. Star count method based on the linear programming technique was applied to the CCD photometric data. We found two prominent peaks at distances of around 1.4 and 2.7 kpc. It is found that the first peak coincides well with stellar density enhancement of B8-A0 stars and the second one with the outer Perseus arm. The effect of the choice of the luminosity function is discussed. The stellar number density distribution is used to derive the distances to the molecular clouds and the visual extinctions caused by the clouds. We found that two molecular clouds are located almost at the same distance of about 1.1 $\pm$ 0.1 kpc, and the peak extinctions caused by the clouds are about 2.2 $\pm$ 0.3 mag in V band.

• Journal of Environmental Health Sciences
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• v.29 no.3
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• pp.50-58
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• 2003

Removal of heavy metal ions (Cd$^{2+}$, Cr$^{3+}$, Cu$^{2+}$, Pb$^{2+}$) by several chitosans was studied and the molecular weight of chitosan was investigated in order to examine the effect of autoclaving. Chitosan were divided into 3 groups (A type, controlled chitosan; B type, autoclaved for 15 min; C type, autoclaved for 60 min). The heavy metal removal capacity and rate of B type chitosan were higher than those of A type and B type chitosan. The molecular weight of chitosan was decreased by the increase of autoclaving time. Therefore, the heavy metal capacity was not well correlated to the molecular weight. Freundlich and Langmuir isotherm was determined from the experimental results of equilibrium adsorption for individual heavy metal ions on chitosan. Langmuir isotherm was well fitted to this experimental data. The heavy metal removal capacity of B type chitosan was in the order of Pb$^{2+}$ > Cu$^{2+}$ > Cd$^{2+}$> Cr$^{3+}$.3+/.$.3+/.

• Asian Pacific Journal of Cancer Prevention
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• v.13 no.4
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• pp.1705-1708
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• 2012

The inception of targeted agents has revolutionized the cancer therapy paradigm, both for physicians and patients. A large number of molecular targeted agents for cancer therapy are currently available for clinical use today. Many more are in making, but there are issues that remain to be resolved for the scientific as well as social community before the recommendation of their widespread use in may clinical scenarios can be done, one such issue being cost and cost effectiveness, others being resistance and lack of sustained efficacy. With the current knowledge about available targeted agents, the growing knowledge of intricate molecular pathways and unfolding of wider spectrum of molecular targets that can really matter in the disease control, calls for only the just use of the agents available now, drug companies need to make a serious attempt to reduce the cost of the agents. Research should focus on agents that show sustained responses in preclinical data. More needs to be done in laboratories and by the pharmaceutical industries, before we can truly claim to have entered a new era of targeted therapy in cancer care.

• BMB Reports
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• v.44 no.11
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• pp.705-712
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• 2011

Advances in the fields of proteomics and genomics have necessitated the development of high-throughput screening methods (HTS) for the systematic transformation of large amounts of biological/chemical data into an organized database of knowledge. Microfluidic systems are ideally suited for high-throughput biochemical experimentation since they offer high analytical throughput, consume minute quantities of expensive biological reagents, exhibit superior sensitivity and functionality compared to traditional micro-array techniques and can be integrated within complex experimental work flows. A range of basic biochemical and molecular biological operations have been transferred to chip-based microfluidic formats over the last decade, including gene sequencing, emulsion PCR, immunoassays, electrophoresis, cell-based assays, expression cloning and macromolecule blotting. In this review, we highlight some of the recent advances in the application of microfluidics to biochemistry and molecular biology.

• The Bulletin of The Korean Astronomical Society
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• v.38 no.1
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• pp.33.2-33.2
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• 2013

We present 12CO ($J=1{\rightarrow}0$) observations of a set of local galaxies (0.04 < z < 0.08) with a large cool gas reservoir, dubbed "HI Monsters". The data were obtained using the Redshift Search Receiver (RSR) on the Five College Radio Astronomy Observatory (FCRAO) 14 m telescope. The sample consists of 20 galaxies with $M_{HI}$ > $3{\times}10^{10}M_{\odot}$ identified by the ALFALFA survey and 8 additional objects with comparable HI mass from a separate LSB galaxy study ($M_{HI}$ > $1.5{\times}10^{10}M_{\odot}$). Our sample selection is purely based on the amount of neutral hydrogen in galaxies, thereby providing a chance to study how atomic and molecular gas relate to each other in these extremely HI-rich systems. We have detected CO in 15 out of 20 ALFALFA selected HI Monsters and 4 out of 8 LSB HI Monsters. We present the global molecular gas properties of the sample and discuss how their molecular gas properties correlate with their star formation activities.

• BMB Reports
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• v.50 no.7
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• pp.355-360
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• 2017

Mutations in Ras GTPase are among the most common genetic alterations in human cancers. Despite extensive research investigating Ras proteins, their functions still remain a challenge over a long period of time. The currently available data suggests that solving the outstanding issues regarding Ras could lead to development of effective drugs that could have a significant impact on cancer treatment. Developing a better understanding of their biochemical properties or modes of action, along with improvements in their pharmacologic profiles, clinical design and scheduling will enable the development of more effective therapies.