• Title/Summary/Keyword: mass spectral method

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A New Selection Strategy of High Redshift Quasars: Medium-Band Observation with SQUEAN

  • Jeon, Yiseul;Im, Myungshin;Pak, Soojong
    • The Bulletin of The Korean Astronomical Society
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    • v.40 no.1
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    • pp.78.3-78.3
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    • 2015
  • About 70 high redshift quasars with $z{\geq}5$ have been discovered through combinations of standard broad-band filters to distinguish them from contaminating sources. However, among the discovered quasars so far, there is a redshift gap at $5{\leq}z{\leq}6$ due to the limitation of traditional filter sets and selection techniques. To understand the early mass growth of supermassive black holes and the final stage of the cosmic reionization, it is important to find a statistically meaningful sample of quasars with various physical properties. Here we suggest a new selection technique of high redshift quasars using medium-band filters: nine filters with bandwidths of 50nm and central wavelengths from 625 to 1025nm. Photometry with these medium-bands traces the spectral energy distribution (SED) of a source, similar to spectroscopy with R~15. We installed these filters to SED camera for QUasars in EArly uNiverse (SQUEAN) on the 2.1m telescope at McDonald Observatory, and conducted test observations of known high redshift quasars at $4.7{\leq}z{\leq}6.1$ and also dwarf stars for comparison. We found differences in SED shapes between high redshift quasars and dwarf stars, determined their locations on color-color diagrams, and demonstrated that the medium-band filters can enhance the efficiency of selecting robust quasar candidates in this redshift range. In this poster, we propose an effective selection method of high redshift quasars using these medium-band filters and discuss its effect on our high redshift quasar survey.

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PROPERTIES OF DUST OBSCURED GALAXIES IN THE NEP-DEEP FIELD

  • Oi, Nagisa;Matsuhara, Hideo;Pearson, Chris;Buat, Veronique;Burgarella, Denis;Malkan, Matt;Miyaji, Takamitsu;AKARI-NEP team
    • Publications of The Korean Astronomical Society
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    • v.32 no.1
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    • pp.245-249
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    • 2017
  • We selected 47 DOGs at z ~ 1.5 using optical R (or r'), AKARI $18{\mu}m$, and $24{\mu}m$ color in the AKARI North Ecliptic Pole (NEP) Deep survey field. Using the colors among 3, 4, 7, and 9µm, we classified them into 3 groups; bump DOGs (23 sources), power-law DOGs (16 sources), and unknown DOGs (8 sources). We built spectral energy distributions (SEDs) with optical to far-infrared photometric data and investigated their properties using SED fitting method. We found that AGN activity such as a AGN contribution to the infrared luminosity and a Chandra detection rate for bump and power-law DOGs are significantly different, while stellar component properties like a stellar mass and a star-formation rate are similar to each other. A specific star-formation rate range of power-law DOGs is slightly higher than that of bump DOGs with wide overlap. Herschel/PACS detection rates are almost the same between bump and power-law DOGs. On the other hand SPIRE detection rates show large differences between bump and power-law DOGs. These results might be explained by differences in dust temperatures. Both groups of DOGs host hot and/or warm dust (~ 50 Kelvin), and many bump DOGs contain cooler dust (${\leq}30$ Kelvin).

Comparative Proteomic Profiling of Pancreatic Ductal Adenocarcinoma Cell Lines

  • Kim, Yikwon;Han, Dohyun;Min, Hophil;Jin, Jonghwa;Yi, Eugene C.;Kim, Youngsoo
    • Molecules and Cells
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    • v.37 no.12
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    • pp.888-898
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    • 2014
  • Pancreatic cancer is one of the most fatal cancers and is associated with limited diagnostic and therapeutic modalities. Currently, gemcitabine is the only effective drug and represents the preferred first-line treatment for chemotherapy. However, a high level of intrinsic or acquired resistance of pancreatic cancer to gemcitabine can contribute to the failure of gemcitabine treatment. To investigate the underlying molecular mechanisms for gemcitabine resistance in pancreatic cancer, we performed label-free quantification of protein expression in intrinsic gemcitabine-resistant and -sensitive human pancreatic adenocarcinoma cell lines using our improved proteomic strategy, combined with filter-aided sample preparation, single-shot liquid chromatography-mass spectrometry, enhanced spectral counting, and a statistical method based on a power law global error model. We identified 1931 proteins and quantified 787 differentially expressed proteins in the BxPC3, PANC-1, and HPDE cell lines. Bioinformatics analysis identified 15 epithelial to mesenchymal transition (EMT) markers and 13 EMT-related proteins that were closely associated with drug resistance were differentially expressed. Interestingly, 8 of these proteins were involved in glutathione and cysteine/methionine metabolism. These results suggest that proteins related to the EMT and glutathione metabolism play important roles in the development of intrinsic gemcitabine resistance by pancreatic cancer cell lines.

Effect of Ethanol on the Protolytic Properties of the Vitamins B Group

  • Ghasemi, J.;Shiri, F.
    • Journal of the Korean Chemical Society
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    • v.51 no.1
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    • pp.21-30
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    • 2007
  • A multiwavelength spectrophotometric titration method was applied to study protolytic constants of four water-soluble vitamins, folic acid(vitamin B9 or B0), thiamine(vitamin B1), riboflavin(vitamin B2) and pyridoxal (vitamin B6) in binary ethanol-water mixtures at 25oC and an ionic strength of 0.1M NaNO3. The protolytic equilibrium constants, spectral profiles, concentration diagrams and also the number of components has been calculated from the curve fitting of the pH-absorbance data with appropriate mass balance equations by an established factor analysis model. DATAN program was used for determination of acidity constant and SPECFIT program was used for calculation of standard deviations and partial correlation coefficients. A glass electrode calibration procedure based on the four parameter equation pH=α+SpcH+JH+[H+]+ JOH-Kw/[H+] based on the Gran,s plots was used to obtain pH-readings in the concentration scale (pcH). The effect of the solvent on the protolytic constants was discussed.

A Comparison of Different Extraction Methods for the Volatile Components of Anise(Pimpinella anisum L.) (추출방법에 의한 아니스의 휘발성 성분 조성 비교)

  • Kown, Young-Ju;Jang, Hee-Jin;Kwag, Jae-Jin;Kim, Ok-Chan;Choi, Young-Hyun;Lee, Jae-Gon
    • Applied Biological Chemistry
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    • v.40 no.2
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    • pp.144-147
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    • 1997
  • Different isolation methods for the volatile components of Anise(Pimpinella anisum L.) are compared in terms of the difference of components obtained with each analytical procedure. These methods include headspace(purge & trap) sampling procedure, simultaneous distillation extraction(SDE), steam distillation and solvent extraction. Total 43 components were identified by? comparing gas chromatography retention time and mass spectral data. Different isolation techniques result in compositionally different isolates. The headspace(purge & trap) sampling procedure was found to be the best method of choice for a qualitative analysis of the volatile components.

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APPLICATIONS OF THE HILBERT-HUANG TRANSFORM ON THE NON-STATIONARY ASTRONOMICAL TIME SERIES

  • HU, CHIN-PING;CHOU, YI;YANG, TING-CHANG;SU, YI-HAO;HSIEH, HUNG-EN;LIN, CHING-PING;CHUANG, PO-SHENG;LIAO, NAI-HUI
    • Publications of The Korean Astronomical Society
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    • v.30 no.2
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    • pp.605-607
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    • 2015
  • The development of time-frequency analysis techniques allow astronomers to successfully deal with the non-stationary time series that originate from unstable physical mechanisms. We applied a recently developed time-frequency analysis method, the Hilbert-Huang transform (HHT), to two non-stationary phenomena: the superorbital modulation in the high-mass X-ray binary SMC X-1 and the quasi-periodic oscillation (QPO) of the AGN RE J1034+396. From the analysis of SMC X-1, we obtained a Hilbert spectrum that shows more detailed information in both the time and frequency domains. Then, a phase-resolved analysis of both the spectra and the orbital profiles was presented. From the spectral analysis, we noticed that the iron line production is dominated by different regions of this binary system in different superorbital phases. Furthermore, a pre-eclipse dip lying at orbital phase ~0:6-0:85 was discovered during the superorbital transition state. We further applied the HHT to analyze the QPO of RE J1034+396. From the Hilbert spectrum and the O-C analysis results, we suggest that it is better to divide the evolution of the QPO into three epochs according to their different periodicities. The correlations between the QPO periods and corresponding fluxes were also different in these three epochs. The change in periodicity and the relationships could be interpreted as the change in oscillation mode based on the diskoseismology model.

Aerodynamic behaviour of double hinged articulated loading platforms

  • Zaheer, Mohd Moonis;Hasan, Syed Danish;Islam, Nazrul;Aslam, Moazzam
    • Ocean Systems Engineering
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    • v.11 no.1
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    • pp.17-42
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    • 2021
  • Articulated loading platforms (ALPs) belongs to a class of offshore structures known as compliant. ALP motions have time periods falling in the wind excitation frequency range due to their compliant behaviour. This paper deals with the dynamic behavior of a double hinged ALP subjected to low-frequency wind forces with random waves. Nonlinear effects due to variable submergence, fluctuating buoyancy, variable added mass, and hydrodynamic forces are considered in the analysis. The random sea state is characterized by the Pierson-Moskowitz (P-M) spectrum. The wave forces on the submerged elements of the platform's shaft are calculated using Morison's Equation with Airy's linear wave theory ignoring diffraction effects. The fluctuating wind load has been estimated using Ochi and Shin wind velocity spectrum for offshore structures. The nonlinear dynamic equation of motion is solved in the time domain by the Wilson-θ method. The wind-structure interactions, along with the effect of various other parameters on the platform response, are investigated. The effect of offset of aerodynamic center (A.C.) with the center of gravity (C.G.) of platform superstructure has also been investigated. The outcome of the analyses indicates that low-frequency wind forces affect the response of ALP to a large extent, which otherwise is not enhanced in the presence of only waves. The mean wind modifies the mean position of the platform surge response to the positive side, causing an offset. Various power spectral densities (PSDs) under high and moderate sea states show that apart from the significant peak occurring at the two natural frequencies, other prominent peaks also appear at very low frequencies showing the influence of wind on the response.

Analysis of clenbuterol in bovine muscle and milk by LC-ESI/MS/MS (LC-ESI/MS/MS를 이용한 소고기와 우유에서의 클렌부테롤 분석)

  • Hong, Selyung;Jeong, Jiyoon;Park, Hyejin;Lee, Soonho;Lee, Jongok
    • Analytical Science and Technology
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    • v.21 no.6
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    • pp.535-542
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    • 2008
  • A liquid chromatography-electrospray ionization tandem mass spectrometry (LC-ESI/MS/MS) method was developed for the determination and confirmation of clenbuterol in bovine muscle and milk. Clenbuterol and clenbuterol-D9 using as an internal standard in samples were extracted with ethyl acetate after hydrolysis and evaporated to dryness. The extracts were dissolved in 20% methanol and cleaned using HLB solid-phase extraction cartridge. The analytes were detected by LC-ESI/MS/MS on a $C_{18}$ column. Mass spectral acquisition was done in selected reaction monitoring (SRM) in positive ion mode to provide a high degree of sensitivity. Using MS/MS with SRM mode, the transitions (precursor to product) monitored were m/z 277${\rightarrow}$203 for clenbuterol, and m/z 286${\rightarrow}$204 for internal standard. The limits of quantitation (LOQ) and mean recoveries of clenbuterol in bovine muscle were $0.2{\mu}g/kg$ and 84.3~91.1%, respectively. The LOQ and mean recoveries in milk were $0.05{\mu}g/kg$ and 87.7~98.3%, respectively.

The Determination of Perfluorooctane sulfonate in Food Packing Materials by HPLC-MS/MS (식품 포장재 중의 퍼플루오르옥탄설포네이트 분석)

  • Kim, Il-Young;Kim, Au-Kyoung;Jung, Bo-Kyoung;Shin, Young;Kim, Ji-Young;Kim, Jung-Han;Chae, Young-Zoo
    • Journal of Food Hygiene and Safety
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    • v.28 no.4
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    • pp.376-380
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    • 2013
  • Determination of PFOS in instant food packing materials by LC-MS/MS was developed. The procedure involves an extraction of the Food Packing Materials with 100% methanol soxcelet extraction method. The LC separation was performed by Hypersil Gold ($150mm{\times}2.1mm$ 5 um) with mobile phases of 2 mM amoniumacetate solution and acetonitrile. The Mass spectral acquisition was done in negative ESI/SRM using the TSQ Quantum Ultra. With this method, good linear relationship, sensitivity and reproducibility were obtained. The rate of recoveries of PFOS from paper material spiked with 1.0 ug/L were 99.84%, respectively. The limit of quantitation and limit of detection were below 0.03 ug/L and 0.009 ug/L. The method had been applied to determination of PFOS in instant food packing materials.

Method Development for the Profiling Analysis of Endogenous Metabolites by Accurate-Mass Quadrupole Time-of-Flight(Q-TOF) LC/MS (LC/TOFMS를 이용한 생체시료의 내인성 대사체 분석법 개발)

  • Lee, In-Sun;Kim, Jin-Ho;Cho, Soo-Yeul;Shim, Sun-Bo;Park, Hye-Jin;Lee, Jin-Hee;Lee, Ji-Hyun;Hwang, In-Sun;Kim, Sung-Il;Lee, Jung-Hee;Cho, Su-Yeon;Choi, Don-Woong;Cho, Yang-Ha
    • Journal of Food Hygiene and Safety
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    • v.25 no.4
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    • pp.388-394
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    • 2010
  • Metabolomics aims at the comprehensive, qualitative and quantitative analysis of wide arrays of endogenous metabolites in biological samples. It has shown particular promise in the area of toxicology and drug development, functional genomics, system biology and clinical diagnosis. In this study, analytical technique of MS instrument with high resolution mass measurement, such as time-of-flight (TOF) was validated for the purpose of investigation of amino acids, sugars and fatty acids. Rat urine and serum samples were extracted by selected each solvent (50% acetonitrile, 100% acetonitrile, acetone, methanol, water, ether) extraction method. We determined the optimized liquid chromatography/time-of-flight mass spectrometry (LC/TOFMS) system and selected appropriated columns, mobile phases, fragment energy and collision energy, which could search 17 metabolites. The spectral data collected from LC/TOFMS were tested by ANOVA. Obtained with the use of LC/TOFMS technique, our results indicated that (1) MS and MS/MS parameters were optimized and most abundant product ion of each metabolite were selected to be monitorized; (2) with design of experiment analysis, methanol yielded the optimal extraction efficiency. Therefore, the results of this study are expected to be useful in the endogenous metabolite fields according to validated SOP for endogenous amino acids, sugars and fatty acids.