• Journal of Microbiology
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• v.45 no.2
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• pp.105-112
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• 2007

The objective of this study was to analyze the phylogenetic composition of bacterial community in the soil of an earth-cave (Niu Cave) using a culture-independent molecular approach. 16S rRNA genes were amplified directly from soil DNA with universally conserved and Bacteria-specific rRNA gene primers and cloned. The clone library was screened by restriction fragment length polymorphism (RFLP), and representative rRNA gene sequences were determined. A total of 115 bacterial sequence types were found in 190 analyzed clones. Phylogenetic sequence analyses revealed novel 16S rRNA gene sequence types and a high diversity of putative bacterial community. Members of these bacteria included Proteobacteria (42.6%), Acidobacteria (18.6%), Planctomycetes (9.0 %), Chloroflexi (Green nonsulfur bacteria, 7.5%), Bacteroidetes (2.1%), Gemmatimonadetes (2.7%), Nitrospirae (8.0%), Actinobacteria (High G+C Gram-positive bacteria, 6.4%) and candidate divisions (including the OP3, GN08, and SBR1093, 3.2%). Thirty-five clones were affiliated with bacteria that were related to nitrogen, sulfur, iron or manganese cycles. The comparison of the present data with the data obtained previously from caves based on 16S rRNA gene analysis revealed similarities in the bacterial community components, especially in the high abundance of Proteobacteria and Acidobacteria. Furthermore, this study provided the novel evidence for presence of Gemmatimonadetes, Nitrosomonadales, Oceanospirillales, and Rubrobacterales in a karstic hypogean environment.

• The Journal of Korean Institute of Communications and Information Sciences
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• v.32 no.6B
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• pp.325-333
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• 2007

An OS requires the device driver to control hardware IPs at application level. Development of a device driver requires specific acknowledge for target hardware and OS. In this paper, we present a system which generates a device driver together with an interface circuit. In the proposed system, an efficient device driver is generated by selecting a basic device driver skeleton, a function module code, and a header file table from the pre-constructed library and an interface circuit is constructed such that the generated device driver operates correctly. The proposed system is evaluated by generating a TFT-LCD device driver on the ARM922T core with 3.5 inch Samsung TFT-LCD in ARM-Linux environment. Experiment result shows that the writing time on the LCD is decreased by 1.12% and the compiled code size is increased by 0.17% compared to the manually generated one. The automatically generated device driver has no performance degradation in the latency of hardware control at the application program level. The system development time can be reduced using the proposed device driver generation system.

• Proceedings of the Korean Aquaculture Society Conference
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• 2003.10a
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• pp.44-44
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• 2003

Gene expression in five tissues of the abalone (Haliotis discus hannai) was investigated using an expressed sequence tag (EST) analysis. Randomly selected clones were obtained from cDNA libraries constructed with gill (GI), digestive diverticula(DD), hepatopancreas (HP), foot/mucus (FM) and rectangular muscle (RM). Of 1,235 clonesanalyzed (288 clones for GI, DD, HP each,166 for FM, and 205 for RM), 741 (60.0%) clones in total turned out to share significant similarity with the sequences from NCBI GenBank (less than 10/sup -3/ of e-values), 423 sequences showed poor similarity (> 10/sup -3/), and 71 sequences didn't match with any sequences in GenBank. The percent unique sequence (singleton) was ranged from 56.1% (RM) to 74.7% (FM) among libraries. On the other hand, overall percent singleton was 55.3% when all the ESTs from five libraries were assembled into contigs. Analysis of the organisms represented by the best hit for each EST (e-values < 10/sup -3/) showed that 23.8% matched with mammalian entries, 24.0% with mollusks, 14.4% with insects, 11.6% with fish and 26.2% with others. The expressed patterns differed among the tissues when judged by the categorization of the sequences from each library into 10 broad functional classes. In all the libraries, the class I (no hit o. poor similarity) was the largest category with an average of 40.1%. This largest class was followed by class V (general metabolisms) in DD (21.9%), GI (14.6%) and HP (16.7%), while the 'cell structure and motility'(class VI) was the second largest class in remaining two libraries (31.2% for RM and 9.6% for FM). The class IX (cell division and proliferation) was the smallest class in all the libraries (less than 3%). This report provides the first tissue-specific lists of expressed abalone genes, which could be a fundamental basis for genomics program of abalone species.

• Korean Journal of Poultry Science
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• v.38 no.3
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• pp.191-195
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• 2011

The objectives of this study are to identify specific functional genes which are related with growth and protein structure of the pectoral muscle of Korean native chicken. Pectoral muscle was isolated from three Korean native chickens (KNC, red brown, 12 months old, 2.41 ${\pm}$ 0.24 kg) and three Cornish chickens (16 month old, 2.76 ${\pm}$ 3.0 kg). The subtraction cDNA library was prepared in PCR4 Blunt-TOPO vector. The DNA sequence homology was compared with other breeds and species in GenBank. A clone NDS-81 was found to be unique for the DNA sequence homology with UBX family. Their partial sequence has high homology (98%) with chicken UBX domain D. Chicken UBX domain has chicken (93%), cattle (68%), dog (67%), mouse (64%) and, human (63%) nucleotide sequence homology. Several regions were mutated from T in chicken to C or G in the NDS-81 clone. The first site is LAD in chicken, but it was expressed as (L)RM in clone NDS-81. In this site, amino acids were changed from Ala to Arg, and from Asp to Met. The second site was changed from ER (Arg) in chicken to ED (Asp) in clone NDS-81. They are both containing functional side chains and play an important role in binding other proteins. Therefore, the clone NDS-81 could be a different candidate gene for the UBX family gene and could related with pectoral muscle structure of Korean native chicken.

• Journal of Environmental Science International
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• v.27 no.8
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• pp.723-735
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• 2018

In this study, to investigate an optimal configuration method for the modeling system, we performed an optimization experiment by controlling the types of compilers and libraries, and the number of CPU cores because it was important to provide reliable model data very quickly for the national air quality forecast. We were made up the optimization experiment of twelve according to compilers (PGI and Intel), MPIs (mvapich-2.0, mvapich-2.2, and mpich-3.2) and NetCDF (NetCDF-3.6.3 and NetCDF-4.1.3) and performed wall clock time measurement for the WRF and CMAQ models based on the built computing resources. In the result of the experiment according to the compiler and library type, the performance of the WRF (30 min 30 s) and CMAQ (47 min 22 s) was best when the combination of Intel complier, mavapich-2.0, and NetCDF-3.6.3 was applied. Additionally, in a result of optimization by the number of CPU cores, the WRF model was best performed with 140 cores (five calculation servers), and the CMAQ model with 120 cores (five calculation servers). While the WRF model demonstrated obvious differences depending on the number of CPU cores rather than the types of compilers and libraries, CMAQ model demonstrated the biggest differences on the combination of compilers and libraries.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.6 no.3
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• pp.427-433
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• 2002

This paper describes a design of cryptographic processor that implements the AES(Advanced Encryption Standard) block cipher algorithm "Rijndael". To achieve high throughput rate, a sub-pipeline stage is inserted into the round transformation block, resulting that the second half of current round function and the first half of next round function are being simultaneously operated. For area-efficient and low-power implementation, the round block is designed to share the hardware resources in encryption and decryption. An efficient scheme for on-the-fly key scheduling, which supports the three master-key lengths of 128-b/192-b/256-b, is devised to generate round keys in the first sub-pipeline stage of each round processing. The cryptoprocessor designed in Verilog-HDL was verified using Xilinx FPGA board and test system. The core synthesized using 0.35-${\mu}{\textrm}{m}$ CMOS cell library consists of about 25,000 gates. Simulation results show that it has a throughput of about 520-Mbits/sec with 220-MHz clock frequency at 2.5-V supply.-V supply.

• Asian Pacific Journal of Cancer Prevention
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• v.16 no.2
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• pp.411-420
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• 2015

Ki-67 has been widely used as an indicator of cell proliferation in gliomas. However, the role of Ki-67 as a prognostic marker is still undefined. Thus, we conducted a meta-analysis of the published literatures in order to clarify the impact of Ki-67 on survival in glioma cases. Eligible studies were identified in PubMed, EMBASE, ISI Web of Science, Cochrane Central Register of Controlled Trials, Science Direct and Wiley Online Library with the last search updated on August 31, 2014. The clinical characteristics, overall survival (OS) and progression-free survival (PFS) together with Ki-67 expression at different time points were extracted. A total of 51 studies, covering 4,307 patients, were included in the current meta-analysis. The results showed that overexpression of Ki-67 can predict poor OS (HR=1.66, 95%CI: 1.53-1.80; Z=11.87; p=0.000) and poor PFS (HR=1.67, 95%CI: 1.47-1.91; Z=7.67; p=0.000) in gliomas. Moreover, subgroup analyses also indicated that high level of Ki-67 expression was related to poor OS and PFS in glioma patients regardless of region, pathology type, cut-off value and statistical method. In conclusion, the current meta-analysis revealed that Ki-67 expression might be a predicative factor for poor prognosis of glioma patients, emphasizing its importance as a predictor.

• The Journal of the Institute of Internet, Broadcasting and Communication
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• v.8 no.4
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• pp.53-58
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• 2008

This paper designs sigma-delta D/A Converter with a high resolution and low power consumption. It reorganizes the input data along LJ, RJ, I2S mode and bit mode to the output data of A/D converter. The D/A converter decodes the original analog signal through HBF, Hold and 5th CIFB(Cascaded Integrators with distributed Feedback as well as distributed input coupling) sigma-delta modulation blocks. It uses repeatedly the addition operation in instead of the multiply operation for the chip area and the performance. Also, the half band filters of similar architecture composed the one block and it used the sample-hold block instead of the sinc filter. We supposed simple D/A Converter decreased in area. The filters of the block analyzed using the matlab tool. The top block designed using the top-down method by verilog language. The designed block is fabricated using Samsung 0.35um CMOS standard cell library. The chip area is 1500*1500um.

• The Journal of the Institute of Internet, Broadcasting and Communication
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• v.8 no.4
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• pp.59-65
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• 2008

This paper proposed a H.264 deblocking filter for the portable low-power multimedia. In H.264 deblocking filter, total 8 input pixels in filtering operations needs own filtering operation process respectively, and each filtering process has common structures for each filtering operation. By sharing common filter coefficients and registers, we have designed and implemented an smaller gated module, and moreover filtering operations are skipped on some or whole pixels what if we use some specific condition to operate filtering modules that need lots of operations. In the core of filtering modules, we achieve 33.31% and 10.85% gate count reduction compared with those of filtering modules of the conventional deblocking filter papers. The proposed low-power deblocking filter is implemented by using samsung 0.35um standard cell library technology, the maximum operationh frequency is 108MHz, and the maximum throughput is 33.03 frames/s with CCIR601 image format.

• Journal of the Institute of Electronics Engineers of Korea SD
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• v.40 no.4
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• pp.85-94
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• 2003

The asynchronous design methods proved to have the higher performance in power consumption and execution speed than synchronous ones because it just needs to activate the required module without feeding clock in the system. Despite the advantage of CISC machine providing the variable addressing modes and instructions, its execution scheme is hardly suited for a synchronous Pipeline architecture and incurs a lot of overhead. This paper proposes a novel asynchronous pipeline architecture, A80sl, whose instruction set is fully compatible with that of Intel 80C51, an embedded micro controller. We classify the instructions into the group keeping the same execution scheme for the asynchronous pipeline and optimize it eliminating the bubble stage that comes from the overhead of the multi-cycle execution. The new methodologies for branch and various instruction lengths are suggested to minimize the number of states required for instructions execution and to increase its parallelism. The proposed A80C51 architecture is synthesized with 0.35${\mu}{\textrm}{m}$ CMOS standard cell library. The simulation results show higher speed than that of Intel 80C51 with 36 MHz and other asynchronous counterparts by 24 times.