• 제목/요약/키워드: leaf shape

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.243-243
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P) >7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Biosystematic Study on the Genus Viola in Korea - Comparative Morphology of the Viola albida Complex - (한국산 제비꽃속의 종분화론적 연구 - 태백제비꽃군의 비교형태학적 연구 -)

  • 김경식
    • Journal of Plant Biology
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    • v.34 no.3
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    • pp.229-238
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    • 1991
  • The main objective of this study was to clarify the taxonomic status and the speciation mechanism of Viola albida complex in Korea. The complex includes three very closely related taxa, taxonomic ranks of which are much in dispute. These taxa in the complex are sympatric in distribution, and they are very similar in most morphological characteristics. Comparative morphological analyses revealed that they can be distinguished on the basis of leaf shape, although they show complicated patterns of variation in leaf shape. The variation of leaf shape in each taxon appeared to be maintained through developmental process, and extensive cleistogamy and vegetative reproduction in these taxa are suggested as the mechanisms maintaining the variation. Genetic variation in this complex was monomorphic in all 14 loci examined. Palynological study also showed that these taxa have the same pollen morphology. These results strongly suggested that they should be recognized as varieties of V. albida; var, albida, var. chaerophylloides, and var. takahashii. The results also suggested that some individuals that can be assigned to var. takahashii might be hybrids between var. albida and var. chaerophylloides.

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The Analysis of Inheritance of Quantitative characters with Oriental Tobacco Varieties (Nicotiana tabacum L.) in Diallel Cross. II. Gene Distribution and Analysis of Variance for each character in $F_1$ Generation. (Orient종 잎담배의 이면교잡에 의한 양적 형질의 유전연구 II. 분산분석과 유전자분포 상태)

  • 정석훈;황주광;손세호
    • Journal of the Korean Society of Tobacco Science
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    • v.4 no.1
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    • pp.15-20
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    • 1982
  • This experiment was carried out to investigate the degrees and directions of dominance, and gene distributions by analysing diallel crosses of oriental varieties. The analysis of Wr-Vr indicated non-allelic gene interaction for days to (lowering and number of leaves. Five Plant characteristics showed different degrees of dominance : incomplete dominance for Plant height and leaf shape, over dominance for , wield and sugar, and complete dominance for nicotine. It was shown that additive genetic variance was predominant for plant height, leaf shape, and total sugar. More number of dominant genes were present in Kavala and canthi for Plant height; Basma, Samsun and Izmir for leaf shape ; and Basma and Samsun (or nicotine. Their directions of dominance were tall height, narrow leaves, and low nicotine, respectively.

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Genetic Analysis for Agronomic , Chemical, and Leaf Characters According to Stalk Position in Flue-Cured Tobacco(Nicotiana tabacum L.) (황색종 연초(Nicotiana tabacum L. )의 주요형질과 엽위별 엽형질에 대한 유전분석 III. 이면교배에 의한 유전력, 형질간 상관 및 경로계수)

  • 조수헌
    • Journal of the Korean Society of Tobacco Science
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    • v.11 no.2
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    • pp.135-141
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    • 1989
  • The experiment was conducted to obtain basic information on breeding of flue-cured tobacco varieties. Nine cultivars and partial diallel set of 36 F1 hybrides were grown at Taegu Experiment Station, Korea Ginseng & Tobacco Research Institute in 1983. Estimated heritability in the narrow-sense ranged from 66.21% to 94.12% for yield, leaves per plant, days to flower, leaf weight, leaf width, leaf shape, nicotine content and reducing sugar content, while that for stalk height, leaf length, midrib weight and midrib width ranged from 28.12% to 56.25%. The genotypic correlations were positive among yield, leaf weight, leaf length, leaf width, midrib weight and midrib width in the middle leaves, days to flower, nicotine content and reducing correlated with leaf length than leaf width. At the path coefficient analysis of the effect of leaf and midrib characters upon yield according to stalk position, leaf weight, leaf width and midrib width in the middle leaves, and leaf weight, and leaf width in the top leaves showed high direct effects.

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Changes in Leaf and Reproductive Traits of Mountain Ash (Sorbus alnifolia) as Urban Flourisher in the Seoul Metropolitan, South Korea (한국 서울 식생의 번성자로서 팥배나무의 형질 변화 양상)

  • Jung, Song-Hie;Cho, Yong-Chan;Lee, Chang-Seok
    • Korean Journal of Environment and Ecology
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    • v.35 no.6
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    • pp.644-658
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    • 2021
  • Understanding the functional traits of dominant species in urban ecosystems provides insight into species' trait adaptation and ecosystem function in response to fragmented and isolated urban vegetation and reduced biological interactions. This study compared means and variances of environmental factors (geographic, meteorological, and soil attributes) and 4 leaf traits (leaf area, specific leaf area, leaf dry mass content, and leaf shape index) and 7 reproductive traits (fruit width, fruit length, fruit shape, fruit dry weight, fruit dry matter content, seed weight, and seed ratio) measured of 40 Sorbus alnifolia individuals in four mountainous areas south of Seoul downtown, South Korea. We then performed the multivariate analysis of trait combinations. While the measured environmental factors indicated the individuality of the survey sites, the urban vegetation was drier and had a longer growth period. The leaves of S. alnifolia in the urban areas were smaller and heavier, and the fruits produced longer and lighter seeds, showing the traits affected by long urbanization. The study confirmed changes in the growth and reproduction mechanism of the S. alnifolia population under the urban environment, indicating reduced biological interaction due to vegetation fragmentation and isolation. This study provides limited but distinct ecological information about the function and persistence of key species in cities with a reduced scale of biological interactions and many negative environmental factors such as air pollution.

The Morphological Characteristics of Morus tiliaefolia Makino Growing Wild in the Korean Peninsula (한반도에 자생하는 돌뽕나무(Morus tiliaefolia Makino)의 형태학적 특성)

  • 박광준
    • Journal of Sericultural and Entomological Science
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    • v.44 no.1
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    • pp.13-18
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    • 2002
  • The morphorogical characteristics of the Morus tiliaefolia growing wild in the Korean peninsula are as follows. The chromosome number of somatic cell is 2n=84,that is hexaploid. The shape of male inflorescence is a long cylinder shape of 3.6∼6.0 cm. The length of female inflorescence is 1.8 cm, red violet or violet and the weight of mulberry fruits is 1.39∼1.65 g. The winter bud is very big in comparison with the branch and the accessory bud does not exist. The leaf is big and lobed leaf or entire leaf, the density of lenticell is 9.42$\pm$1.29 ㎠. The length of leaf trichome is 236∼438 ㎛ and the distribution density is 16∼37/25 ㎟ and heigh density of leaf back. The trichome shape of the leaf surface is cylinder shaped, in the leaf back it is thin and long corn shaped.

Inheritance of Several Qualitative Characters in Cyclamen persicum (시클라멘의 몇 가지 형질의 유전)

  • Song, Cheon Young;Oh, Dae-Geun
    • Korean Journal of Breeding Science
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    • v.42 no.2
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    • pp.188-194
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    • 2010
  • This experiment was conducted to characterize the inheritance of petal color, flower-eye color, flower shape, leaf variegation pattern, and leaf-end shape in Cyclamen persicum. The segregation of $F_2$ and backcross populations from crosses between inbred lines was tested for Mendelian inheritance mode. From four different combinations of crosses, it was found that the petal color was controlled by a single incomplete dominant gene. The other characters, flower-eye color, flower shape, leaf variegation pattern and leaf-end shape were confirmed to be controlled by single complete dominant genes.

Taxonomic reexamination of two Huperzia species (Lycopodiaceae) in Northeast Asia (동북아시아 뱀톱속 (석송과) 두 종의 분류학적 재검토)

  • Lim, Jina;Yun, Na Rae;Lee, Byoung-yoon;Sun, Byung-Yun
    • Korean Journal of Plant Taxonomy
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    • v.45 no.4
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    • pp.299-305
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    • 2015
  • A comparison of the external morphology and spores clearly distinguished Huperzia lucidula (Michaux) Trevis. in northeast Asia and North America in terms of leaf shape, leaf margin, distribution of stomata on leaves, and spore shape. Therefore, the northeast Asian plants should be treated as a separate species, H. asiatica (Ching) B.-Y. Sun & J. Lim. In addition, we believe that H. javanica (Sw.) C. Yang, regarded as conspecific or infraspecific with H. serrata (Thunb.) Trevis., is a distinct species based on the presence of a leaf petiole and serrated leaf margins, and the shape of the gemmiferous branchlets.

Performance Evaluations for Leaf Classification Using Combined Features of Shape and Texture (형태와 텍스쳐 특징을 조합한 나뭇잎 분류 시스템의 성능 평가)

  • Kim, Seon-Jong;Kim, Dong-Pil
    • Journal of Intelligence and Information Systems
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    • v.18 no.3
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    • pp.1-12
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    • 2012
  • There are many trees in a roadside, parks or facilities for landscape. Although we are easily seeing a tree in around, it would be difficult to classify it and to get some information about it, such as its name, species and surroundings of the tree. To find them, you have to find the illustrated books for plants or search for them on internet. The important components of a tree are leaf, flower, bark, and so on. Generally we can classify the tree by its leaves. A leaf has the inherited features of the shape, vein, and so on. The shape is important role to decide what the tree is. And texture included in vein is also efficient feature to classify them. This paper evaluates the performance of a leaf classification system using both shape and texture features. We use Fourier descriptors for shape features, and both gray-level co-occurrence matrices and wavelets for texture features, and used combinations of such features for evaluation of images from the Flavia dataset. We compared the recognition rates and the precision-recall performances of these features. Various experiments showed that a combination of shape and texture gave better results for performance. The best came from the case of a combination of features of shape and texture with a flipped contour for a Fourier descriptor.

Morphological Characteristics of Leaves, Trichomes and acorns in artificial hybrids of Quercus aliena ${\times}$ Q. mongolica var. crispula and Q. serrata ${\times}$ Q. mongolica var. crispula hybrids

  • Lee, Jeong-Ho;Kang, Kyu-Suk
    • Korean Journal of Plant Resources
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    • v.22 no.3
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    • pp.266-272
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    • 2009
  • Morphological characteristics of leaves, trichomes and acorns were investigated in 6-year-old artificial hybrids of Q. aliena ${\times}$ Q. mongolica var. crispula and Q. serrata ${\times}$ Q. mongolica var. crispula. Leaf shapes of Q. aliena ${\times}$ Q. mongolica var. crispula $F_{1}$ were obovate and resembled to that of Q. aliena. But several characters including the size of leaf and petiole and the shape of leaf base resembled to those of Q. mongolica var. crispula. In F1 hybrids, small stellate hairs distributed sparsely on the abaxial surface and their lay length was intermediate between both parents. There were no big differences on characters of nuts and cupules between both parents and $F_{1}$ hybrids. Leaf shapes of Q. serrata ${\times}$ Q. mongolica var. crispula $F_{1}$ were obovate-elliptic, and the leaf shape and leaf base and the length of petiole resembled to those of Q. mongolica var. crispula, but leaf size and serration resembled to those of Q. serrata. The number of serration in a leaf was intermediate between both parents. Small stellate hairs distributed sparsely and large single hairs were mixed on the reverse side of leaves. there were no big differences on the number and size of stellate hairs between $F_{1}$ hybrid and Q. serrata. It is able to distinguish $F_{1}$ hybrids from both parents by the size leaf size and shapes, leaf base and serration, petiole length and trichome type in the leaf.