• Title/Summary/Keyword: k-d tree

Search Result 679, Processing Time 0.033 seconds

Shallow Population Genetic Structures of Thread-sail Filefish (Stephanolepis cirrhifer) Populations from Korean Coastal Waters

  • Yoon, M.;Park, W.;Nam, Y.K.;Kim, D.S.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.25 no.2
    • /
    • pp.170-176
    • /
    • 2012
  • Genetic diversities, population genetic structures and demographic histories of the thread-sail filefish Stephanolepis cirrhifer were investigated by nucleotide sequencing of 336 base pairs of the mitochondrial DNA (mtDNA) control region in 111 individuals collected from six populations in Korean coastal waters. A total of 70 haplotypes were defined by 58 variable nucleotide sites. The neighbor-joining tree of the 70 haplotypes was shallow and did not provide evidence of geographical associations. Expansion of S. cirrhifer populations began approximate 51,000 to 102,000 years before present, correlating with the period of sea level rise since the late Pleistocene glacial maximum. High levels of haplotype diversities ($0.974{\pm}0.029$ to $1.000{\pm}0.076$) and nucleotide diversities (0.014 to 0.019), and low levels of genetic differentiation among populations inferred from pairwise population FST values (-0.007 to 0.107), support an expansion of the S. cirrhifer population. Hierarchical analysis of molecular variance (AMOVA) revealed weak but significant genetic structures among three groups ($F_{CT}$ = 0.028, p<0.05), and no genetic variation within groups (0.53%; $F_{SC}$ = 0.005, p = 0.23). These results may help establish appropriate fishery management strategies for stocks of S. cirrhifer and related species.

Characterization of Trichoderma spp. Associated with Green Mold of Oyster Mushroom by PCR-RFLP and Sequence Analysis of ITS Regions of rDNA

  • Park, Myung-Soo;Seo, Geon-Sik;Bae, Kyung-Sook;Yu, Seung-Hun
    • The Plant Pathology Journal
    • /
    • v.21 no.3
    • /
    • pp.229-236
    • /
    • 2005
  • Molecular profIles of PCR-RFLP and sequence analysis of internal transcribed spacer (ITS) regions of rDNA were compared between morphologically distinguishable species of Trichoderma isolated from substrates of oyster mushroom in Korea, T. atroviride, T. citrinoviride, T. harzianum, T. longibrachiatum, T. virens, and two unidentified species, Trichoderma sp. 1 and 2. PCR­RFLP analysis divided the Trichoderma spp. into six RFLP groups, A, B, C, D, E, and F. The RFLP groups were generally agreed with described morphological species, except that the RFLP group A containing the two unidentified species. A neighbor-joining tree based on ITS sequences well supported RFLP groups observed by RFLP analysis of ITS regions of rDNA. Additionally, the two unidentified species, Trichoderma sp. 1 and 2, which could not be distinguished by PCR­RFLP analysis, were separated in sequence analysis of ITS regions of rDNA.

Phenolic Glycosides from Cercidiphyllum japonicum Leaves

  • Lee, Tae-Seong;Min, Hee-Jeong;Bae, Young-Soo
    • Journal of the Korean Wood Science and Technology
    • /
    • v.43 no.5
    • /
    • pp.591-599
    • /
    • 2015
  • Cercidiphyllum japonicum leaves were collected, air-dried and extracted with 70% aqueous acetone, then concentrated and sequentially fractionated using n-hexane, methylene chloride ($CH_2Cl_2$), ethylacetate (EtOAc), and $H_2O$. A portion of EtOAc fraction (10 g) was chromatographed on a Sephadex LH-20 column, by the successively elution with various aqueous $MeOH-H_2O$ (1:9, fraction $1-2{\rightarrow}3:7$, fraction $3-5{\rightarrow}1:1$, fraction $6-9{\rightarrow}7:3$, fraction $10-13{\rightarrow}9:1$, fraction 14-16). Compound 2 was isolated from fraction 6 and compound 1 was separated from fraction 11 and 12. Compound 3 and 4 were purified from fraction 13. The isolated compounds were elucidated as quercetin-3-O-${\alpha}$-L-rhamnopyranoside (1), chlorogenic acid (2), quercetin-3-O-${\alpha}$-L-arabinofuranoside (3) and quercetin-3-O-${\beta}$-D-xylopyranoside (4) by the spectral and literature data, and by comparison with the authentic samples. These compounds were reported, for the first time, from the extracts of C. japonicum leaves. Also chlorogenic acid (2) has never been reported before in domestic tree species and can be used as an index compound for C. japonicum.

The Influence of Optical Porosity of Tree Windbreaks on Windward Wind Speed, Erosive Force and Sand Deposition

  • Dafa-Alla, M.D.;Al-Amin, Nawal K.N.
    • Journal of Forest and Environmental Science
    • /
    • v.32 no.2
    • /
    • pp.212-218
    • /
    • 2016
  • The research was conducted windward of an irrigated Acacia amplicips Maslin windbreak established to protect As Salam Cement Plant from winds and moving sands. Two belts with approximate optical porosities of 50% and 20% were studied in River Nile State, Sudan. The research aimed at assessing the efficiency of the two belts in wind speed reduction and sand deposition. Research methods included: (i) estimation of optical porosity, (ii) measurements of windward wind speeds at a control and at distances of 0.5 h (h stands for windbreak height), 1 h and 2 h at two vertical levels of 0.25 h and 0.5 h, (iii) estimation of relative wind speeds at the three positions (distance and height) at windward and (iv) estimation of wind erosive forces and prediction of zones of sand deposition. Results show that while the two belts reduced windward wind speeds at the two levels for the three distances, belt II was more effective. Nearest sand deposition occurred at 2 h and 1h windward of belt II and belt I, respectively, at level 0.25 h. At level 0.5 h, sand was deposited only at 2 h windward of belt II and no sand deposition occurred windward of belt I. The study concludes that less porous windbreaks are more effective in reducing wind speed and in depositing sand in windward direction at a distance of not less than twice the belt height.

A Survey of Termitomyces (Lyophyllaceae, Agaricales), Including a New Species, from a Subtropical Forest in Xishuangbanna, China

  • Ye, Lei;Karunarathna, Samantha C.;Li, Huli;Xu, Jianchu;Hyde, Kevin D.;Mortimer, Peter E.
    • Mycobiology
    • /
    • v.47 no.4
    • /
    • pp.391-400
    • /
    • 2019
  • A survey of mushrooms was conducted in Xishuangbanna, Yunnan Province, China, in the rainy season (May to October) of 2012, 2013, and 2014, during which 16 specimens of Termitomyces were collected. Preliminary macro- and micro-characteristics, together with ITS sequence data, showed that four of the specimens belonged to a new species (Termitomyces fragilis), while the other 12 belonged to T. aurantiacus, T. eurrhizus, T. globules, T. microcarpus, and T. bulborhizus. In this paper, T. fragilis is introduced as a species new to science based on morphological characterization and phylogenetic analyses. Macro- and micro- morphological descriptions, color photographs and line drawings of the new species, and a phylogenetic tree to show the placement of the new species are provided. T. fragilis is then compared with other closely related taxa in the genus Termitomyces.

Reference Frame Approach for Torque Ripple Minimization of BLDCM over Wide Speed Range Including Cogging Torque (코깅 토크를 포함한 광역 속도 영역상의 BLDCM의 토크 리플 최소화를 위한 기준 프레임 접근기법)

  • Park, Han-Woong;Cho, Sung-Bae;Won, Tae-Hyun;Kwon, Soon-Jae;Ham, Byung-Woon;Kim, Cheul-U
    • Proceedings of the KIEE Conference
    • /
    • 2001.04a
    • /
    • pp.33-36
    • /
    • 2001
  • Torque ripple control of brush less DC motor has been the main issue of the servo drive systems in which the speed fluctuation, vibration and acoustic noise should be minimized. Most methods for suppressing the torque ripples require Fourier series analysis and either the iterative or least mean square minimization. In this paper, the novel approach to achieve the ripple-tree torque control with maximum efficiency based on the d-q-0 reference frame is presented. The proposed method optimize the reference phase current waveforms including even the case of 3 phase unbalanced condition, and the motor winding currents are controlled to follow up the optimized current waveforms by delta modulation technique. As a result, the proposed approach provides a simple and clear way to obtain the optimal motor excitation currents. The validity and practical applications of the proposed control scheme are verified through the simulations and experimental results.

  • PDF

Study on New Encoding based GA for Solving Bicriteria Network Topology Design Problems (2목적 네트워크 토폴로지 설계 문제를 풀기위한 새로운 엔코딩 기반의 유전자 알고리즘에 대한 연구)

  • Kim, Jong-Ryul;Lee, Jae-Uk;Yoo, Jung-Ho
    • Proceedings of the Korea Information Processing Society Conference
    • /
    • 2003.05a
    • /
    • pp.289-292
    • /
    • 2003
  • 인터넷이 발전함에 따라 네트워크 시스템의 토폴로지 설계에 관한 여러 가지 문제들에 대한 관심이 증가하고 있다. 이러한 네트워크의 토폴로지 구조는 서비스 센터, 터미널(사용자), 연결 케이블로 이루어져 있다. 근래에 이런 네트워크 시스템들은 사용자들로부터의 요구사항이 많아지고 있기에 주로 광케이블로 구축하는 경우가 점차 늘어나고 있다지만, 광케이블의 비판 비용을 고려하면 네트워크의 구조가 스패닝 트리(spanning tree)로 구축되어 지는 것이 바람직하다고 볼 수 있다. 네트워크 토폴로지 설계 문제들은 연결비용, 평균 메시지 지연, 네트워크 신뢰도 등과 같은 설계 기준들을 최적으로 만족하는 토폴로지를 탐색하는 것으로 정의될 수 있다. 최근에 유전자 알고리즘(GA)은 네트워크 최적화 문제, 조합 최적화 문제, 다목적 최적화 문제 등과 같은 관련된 분야에서 많은 연구들이 이루어지고 있으며 또한, 많은 실세계의 문제를 위한 최적화 기술로서 그 잠재력을 매우 주목 받고 있다. 본 논문에서는 연결비용, 평균 메시지 지연, 네트워크 신뢰도를 고려하여, 광케이블로 구성되어 지는 광대역통신 네트워크의 2목적 네트워크 토폴로지 설계 문제들을 풀기 위한 GA를 제안한다. 또한, 후보 네트워크 토폴로지 구조를 염색체(chromosome)로 표현하기 위해 Prtifer수(PN_와 클러스터 스트링으로 구성되어지는 새로운 엔코딩 방법도 제안한다. 마지막으로 수치예를 통해 제안한 GA의 성능을 평가할 것이다.

  • PDF

Variable Density Yield Model for Irrigated Plantations of Dalbergia sissoo Grown Under Hot Arid Conditions in India

  • Tewari, Vindhya Prasad
    • Journal of Forest and Environmental Science
    • /
    • v.28 no.4
    • /
    • pp.205-211
    • /
    • 2012
  • Yield tables are a frequently used data base for regional timber resource forecasting. A normal yield table is based on two independent variables, age and site (species constant), and applies to fully stocked (or normal) stands while empirical yield tables are based on average rather than fully stocked stands. Normal and empirical yield tables essentially have many limitations. The limitations of normal and empirical yield tables led to the development of variable density yield tables. Mathematical models for estimating timber yields are usually developed by fitting a suitable equation to observed data. The model is then used to predict yields for conditions resembling those of the original data set. It may be accurate for the specific conditions, but of unproven accuracy or even entirely useless in other circumstances. Thus, these models tend to be specific rather than general and require validation before applying to other areas. Dalbergia sissoo forms a major portion of irrigated plantations in the hot desert of India and is an important timber tree species where stem wood is primarily used as timber. Variable density yield model is not available for this species which is very crucial in long-term planning for managing the plantations on a sustained basis. Thus, the objective of this study was to develop variable density yield model based on the data collected from 30 sample plots of D. sissoo laid out in IGNP area of Rajasthan State (India) and measured annually for 5 years. The best approximating model was selected based on the fit statistics among the models tested in the study. The model develop was evaluated based on quantitative and qualitative statistical criteria which showed that the model is statistically sound in prediction. The model can be safely applied on D. sissooo plantations in the study area or areas having similar conditions.

Biomass and Net Primary Productivity of Pinus densiflora Natural Ecosystem in Kangwondo, Korea (강원도산(江原道産) 소나무천연림생태계(天然林生態系)의 Biomass 및 Net Primary Production에 관(關)한 연구(硏究))

  • Lee, Soo Wook
    • Journal of Korean Society of Forest Science
    • /
    • v.71 no.1
    • /
    • pp.74-81
    • /
    • 1985
  • Dimension analysis was used to estimate biomass and net primary production(NPP) in a 36-year-old Japanese red pine (Pines densiflora S. et Z.) natural forest in Kangwondo. Best estimation was made by the equation model of $Wt=aD^bH^c$ where Wt is weight in kg, D is DBH in cm, and H is total tree height in m. Total aboveground biomass was estimated at 198.82 t/ha. Organic matter was distributed in the Japanese red pine stand as follows ; bolewood 68.8%, live branches 16.5%, bolebark 5.4%, foliage 4.6%, dead branches 3.7%, and cones 0.6%. Net primary production was estimated at 15.87 t/㏊/yr and was distributed: bolewood 44.5%, live branches 30.9%, foliage 14.1%, current twig 7.1%, and bolebark 3.3%. Leaf efficiency was estimated at 1.876. The power equation for biomass and IVPP yielded similar results as the results for Pines densiflora in Japan.

  • PDF

Evaluation on the Hydrologic Effects after Applying an Infiltration Trench and a Tree Box Filter as Low Impact Development (LID) Techniques (저영향 개발기법의 침투도랑과 나무여과상자 적용 후 수문학적 효과 평가)

  • Flores, Precious Eureka D.;Maniquiz-Redillas, Marla C.;Tobio, Jevelyn Ann S.;Kim, Lee-Hyung
    • Journal of Korean Society on Water Environment
    • /
    • v.31 no.1
    • /
    • pp.12-18
    • /
    • 2015
  • In this research, the hydrologic effects between a pre-existing urban landuse and low impact development (LID) applied conditions were compared and evaluated. The infiltration trench and tree box filter that were utilized in LID represent only 1% of the catchment area that they drain. Storm event monitoring were conducted from July 2010 to July 2014 on a total of 22 storm events in both LID sites. After LID, hydrological improvement was observed as the sites exhibited a delay (lag time) or reduction in the magnitude, frequency and duration of runoff and flow peaks as the rainfall progress. In addition, the maximum irreducible peak flow reduction for infiltration trench was found to be 61% and 33% for the tree box filter when rainfall was 40 mm and 30 mm, respectively. In designing LID, it is recommended to consider the storage capacity and catchment area, as well as the amount of rainfall and runoff on the site.