Shallow Population Genetic Structures of Thread-sail Filefish (Stephanolepis cirrhifer) Populations from Korean Coastal Waters |
Yoon, M.
(Institute of Marine Living Modified Organisms, Pukyong National University)
Park, W. (Institute of Marine Living Modified Organisms, Pukyong National University) Nam, Y.K. (Institute of Marine Living Modified Organisms, Pukyong National University) Kim, D.S. (Institute of Marine Living Modified Organisms, Pukyong National University) |
1 | Shui, B. N., Z. Q. Han, T. X. Gao, Z. Q. Miao and T. Yanagimoto. 2009. Mitochondrial DNA variation in the East China Sea and Yellow Sea populations of Japanese Spanish mackerel Scomberomorus niphonius. Fish. Sci. 75:593-600. DOI |
2 | Weersing, K. and R. J. Toonen. 2009. Population genetics, larval dispersal, and connectivity in marine systems. Mar. Ecol. Prog. Ser. 393:1-12. DOI |
3 | Wilson, A. C., R. L. Cann, S. M. Carr, M. George, U. B. Gyllensten, K. Helm-Btchowski, R. G. Higuchi, S. R. Palumbi, E. M. Prager, R. D. Sage and M. Stone-King. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26:375-400. DOI |
4 | Xiao, Y., Y. Zhang, T. Gao, T. Yanagimoto, M. Yabe and Y. Sakurai. 2009. Genetic diversity in the mtDNA control region and population structure in the small yellow croaker Larimichthys polyactis. Environ. Biol. Fishes 85:303-314. DOI |
5 | Yoon, M., J. Y. Jung, Y. K. Nam and D. S. Kim. 2011. Genetic diversity of thread-sail filefish (Stephanolepis cirrhifer) populations in Korean coastal waters inferred from mitochondrial DNA sequence analysis. Fish. Aqua. Sci. 14:16-21. |
6 | Zhang, J., Z. Cai and L. Huang. 2006. Population genetic structure of crimson snapper Lutjanus erythropterus in East Asia, revealed by analysis of the mitochondrial control region. ICES J. Mar. Sci. 63:693-704. DOI ScienceOn |
7 | Kitano, J., S. Mori and C. L. Peichel. 2007. Phenotypic divergence and reproductive isolation between sympatric forms of Japanese threespine sticklebacks. Biol. J. Linn. Soc. 91:671-685. DOI ScienceOn |
8 | Liu, J. X., T. X. Gao, K. Yokogawa and Y. P. Zhang. 2006. Differential population structuring and demographic history of two closely related fish species, Japanese sea bass (Lateolabrax japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific. Mol. Phylogenet. Evol. 39:799-811. DOI ScienceOn |
9 | Masuda, H., K. Amaoka, C. Araga, T. Uyeno and T. Yoshino. 1984. The fishes of the Japanese Archipelago. Tokai University Press, Tokyo, Japan. |
10 | McElroy, D., P. Moran, E. Bermingham and I. Kornfield. 1993. REAP: an integrated environment for the manipulation and phylogenetic analysis of restriction data. J. Hered. 83:157-158. |
11 | Miyajima, Y., R. Masuda, A. Kurihara, R. Kamata, Y. Yamashita and T. Takeuchi. 2011. Juveniles of thread-sail filefish, Stephanolepis cirrhifer, can survive and grow by feeding on moon jellyfish Aurelia aurita. Fish. Sci. 77:41-48. DOI ScienceOn |
12 | Moritz, C., T. W. Dowling and W. M. Brown. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematic. Ann. Rev. Ecol. Syst. 18:269-292. DOI |
13 | Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, USA. |
14 | Nelson, J. S. 1994. Fishes of the World. 3rd Edn. John Wiley & Sons Inc., New York, USA. |
15 | Ni, I. H. and K. Y. Kwok. 1999. Marine fish fauna in Hong Kong waters. Zool. Stud. 38:130-152. |
16 | Nishimura, S. 1974. Formation of the sea of Japan. Tsukiji Shokan, Tokyo, Japan. |
17 | Avise, J. C. 1994. Molecular markers, natural history and evolution. Chapman & Hall, New York, USA. |
18 | Kimura, M. 1996. Quaternary paleogeography of the Ryukyu. Arc. J. Geol. 105:259-285. |
19 | Kimura, M. 2000. Paleography of the Ryukyu Islands. Tropics 10:5-24. DOI |
20 | Allendorf, F. W. and N. Ryman. 1987. Population genetics and fishery management. In: Genetic Management of Hatchery Stocks (Ed. N. Ryman and F. Utter) University of Washington Press, Seattle, WA, USA. pp. 141-159. |
21 | Avise, J. C. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA, USA. |
22 | Bailey, K. M. 1997. Structural dynamics and ecology of flatfish populations. Neth. J. Sea Res. 37:269-280. DOI ScienceOn |
23 | Brown, J. R., A. T. Beckenbach and M. J. Smith. 1993. Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus). Mol. Biol. Evol. 10:326-341. |
24 | Excoffier, L., G. Laval and S. Schneider. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. 1:47-50. |
25 | FAO. 2004. Depleted marine resources: an approach to quantification based on the FAO capture database. FAO Fisheries Circular, No. 1011:18-19. Rome, Fisheries and Aquaculture Organization. Department, Fishery Information, Data and Statistics Unit. |
26 | Seeb, L. W. and P. Crane. 1999. Allozymes and mitochondrial DNA discriminate Asian and North American populations of chum salmon in mixed-stock fisheries along the south coast of the Alaska Peninsula. Trans. Am. Fish. Soc. 128:88-103. DOI |
27 | Rozas, J. and R. Rozas. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Appl. Biosci. 13:307-311. |
28 | Sato, S., J. Ando, H. Ando, S. Urawa, A. Urano and S. Abe. 2001. Genetic variation among Japanese populations of chum salmon inferred from the nucleotide sequences of the mitochondrial DNA control region. Zoolog. Sci. 18:99-106. DOI ScienceOn |
29 | Savolainen, O. and H. Kuittinen. 2000. Small population processes. In: Forest Conservation Genetics: Principles and Practice (Ed. A. Young, D. Boshier and T. Boyle) CABI Publishing, Wallingford, UK. pp. 91-100. |
30 | Senjyu, T. 1999. The Japan Sea intermediate water; its characteristics and circulation. J. Oceanogr. 55:111-122. DOI ScienceOn |
31 | Schneider, S. and L. Excoffier. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1079-1089. |
32 | Shao, K. T., C. P. Lin, L. T. Ho and P. L. Lin. 1990. Study on the fish communities from northern and southern waters of Taiwan by analyzing the impingement data. J. Fish. Soc. Taiwan 17:73-90. |
33 | Slatkin, M. and R. R. Hudson. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562. |
34 | Stepien, C. A. and J. E. Faber. 1998. Population genetic structure, phylogeography, and spawning philopatry in walleye (Stizostedion vitreum) from mtDNA control region sequences. Mol. Ecol. 7:1757-1769. DOI ScienceOn |
35 | Han, Z. Q., T. X. Gao, T. Yanagimoto and Y. Sakurai. 2008. Genetic population structure of Nibea albiflora in Yellow Sea and East China Sea. Fish. Sci. 74:544-552. DOI ScienceOn |
36 | Rogers, A. R. and H. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9:552-569. |
37 | Grant, W. S. and B. W. Bowen. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J. Hered. 89:415-426. DOI ScienceOn |
38 | Guarnieo, I., S. Franzellitti, N. Ungaro, S. Tommasini, C. Piccinetti and F. Tinti. 2002. Control region haplotype variation in the central Mediterranean common sole indicates geographical isolation and population structuring in Italian stock. J. Fish Biol. 60:1459-1474. DOI |
39 | Hurt, C. and H. Phillip. 2004. Conservation genetics in aquatic species: general approaches and case studies in fishes and spring snails of arid lands. Aquat. Sci. 66:402-413. DOI |
40 | Ichikawa, H. and R. C. Beardsley. 2002. The current system in the Yellow and East China Seas. J. Oceanog. 58:77-92. DOI ScienceOn |
41 | Kim, I. S., Y. Choi, C. L. Lee, Y. J. Lee, B. J. Kim and J. H. Kim. 2005. Illustrated book of Korean fishes. Kyo-Hak Pub Co., Seoul. (in Korean). |
42 | Kim, W. J., K. K. Kim, H. S. Han, B. H. Nam, Y. O. Kim, H. J. Kong, J. K. Noh and M. Yoon. 2010. Population structure of the olive flounder (Paralichthys olivaceus) in Korea inferred from microsatellite marker analysis. J. Fish Biol. 76:1958-1971. DOI ScienceOn |
43 | Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions that compare studies of nucleotide sequences. J. Mol. Evol. 16:111-120. DOI |
44 | Frankel, O. H. and M. E. Soule. 1981. Conservation and evolution. Cambridge University Press, New York, USA. |
45 | Felsenstein, J. 1993. PHYLIP (Phylogeny Interference Package) Version 3.5c. Department of Genetics, Washington State University, Seattle, USA. |