• Title/Summary/Keyword: j-deletion

Search Result 61, Processing Time 0.032 seconds

Korean Red Ginseng increases defective pol gene in peripheral blood mononuclear cells of HIV-1-infected patients; inhibition of its detection during ginseng-based combination therapy

  • Cho, Young Keol;Kim, Jung-Eun;Woo, Jun-Hee
    • Journal of Ginseng Research
    • /
    • v.43 no.4
    • /
    • pp.684-691
    • /
    • 2019
  • Background: We have reported that defective nef and gag genes are induced in HIV-1-infected patients treated with Korean Red Ginseng (KRG). Methods: To investigate whether KRG treatment and highly active antiretroviral therapy (HAART) affect genetic defects in the pol gene, we amplified and sequenced a partial pol gene (p-pol) containing the integrase portion (1.2 kb) by nested PCR with sequential peripheral blood mononuclear cells over 20 years and compared it with those patients at baseline, in control patients, those taking ginseng-based combination therapy (GCT; KRG plus combinational antiretroviral therapy) and HAART alone. We also compared our findings to look for the full-length pol gene (pol) (3.0-kb) Results: Twenty-patients infected with subtype B were treated with KRG for $116{\pm}58months$ in the absence of HAART. Internal deletion in the pol gene (${\Delta}pol$) was significantly higher in the KRG group (11.9%) than in the control group and at baseline; its detection was significantly inhibited during GCT as much as during HAART. In addition, the ${\Delta}pol$ in p-pol significantly depended on the duration of KRG treatment. In pol, the proportion of ${\Delta}pol$ was significantly higher in the KRG group (38.7%) than in the control group, and it was significantly inhibited during GCT and HAART. In contrast, the proportion of stop codon appeared not to be affected by KRG treatment. The PCR success rate was significantly decreased with longer GCT. Conclusion: The proportion of ${\Delta}pol$ depends on template size as well as KRG treatment. HAART decreases the detection of ${\Delta}pol$.

Manufacturing Integral Safety Vents in Prismatic Lithium-ion Batteries (직사각형 리튬 이온 전지의 일체형 안전장치 제조 공정에 관한 연구)

  • Kim, J. H.;Lee, K. H.;Lim, Y. J.;Kim, B. M.
    • Transactions of Materials Processing
    • /
    • v.24 no.4
    • /
    • pp.293-298
    • /
    • 2015
  • A safety vent is crucial to protect its user from unpredictable explosions caused by increasing internal pressure of the lithium-ion batteries. In order to prevent the explosion of the battery, a safety vent rupture is required when the internal pressure reaches a critical value. In conventional manufacturing, the cap plate and the safety vent are fabricated separately and subsequently welded to each other. In the current study, a manufacturing process including a backward extrusion and coining process is suggested to produce an integral safety vent which also has the benefit of increasing production efficiency. FE simulations were conducted to predict the rupture pressure and to design the safety vent using a ductile fracture criterion and the element deletion method. The critical value, C, in the ductile fracture criterion was obtained from uniaxial tensile tests with an annealed sheet of 1050-H14 aluminum alloy. Rupture tests were preformed to measure the rupture pressure of the safety vent. The results met the required rupture pressure within 8.5±0.5 kgf/cm2. The simulation results were compared with experimental results, which showed that the predicted rupture pressures are in good agreement with experimentally measured ones with a maximum error of only 3.9%.

Development of Outage Data Management System to Calculate the Probability for KEPCO Transmission Systems (한전계통의 송전망 고장확률 산정을 위한 상정고장 DB 관리시스텀(ezCas) 개발)

  • Cha S. T.;Jeon D. H.;Kim T. K.;Jeon M. R.;Choo J. B.;Kim J. O.;Lee S .H
    • Proceedings of the KIEE Conference
    • /
    • summer
    • /
    • pp.88-90
    • /
    • 2004
  • Data are a critical utility asset. Collecting correct data on site leads to accurate information. Data, when gathered with foresight & properly formatted, are useful to both existing database and easily transferable to newer, more comprehensive historical outage data. However, when investigating data items options, the task, can be an arduous one, often requiring the efforts of entire committees. This paper firstly discusses the KEPCO's past 10 years of historical outage data which include meterological data, and also by several elements of the National Weather Service, failure rate, outage duration, and probability classification, etc. Then, these collected data are automatically stored in an Outage Data Management System (ODMS), which allows for easy access and display. ODMS has a straight-forward and easy-to-use interface. It lets you to navigate through modules very easily and allows insertion, deletion or editing of data. In particular, this will further provide the KEPCO that not only helps with probabilistic security assessment but also provides a platform for future development of Probability Estimation Program (PEP).

  • PDF

An Analysis of Pronunciation Errors in Word-initial Onglides in English and a Suggestion of Teaching Method (어두에 나타나는 상향 이중모음의 오류분석 및 지도방안 연구)

  • Choi, Ju-Young;Park, Han-Sang
    • Proceedings of the KSPS conference
    • /
    • 2007.05a
    • /
    • pp.183-186
    • /
    • 2007
  • This study analyzes Korean high school students' pronunciation errors in word-initial onglides in English. For this study, 24 Korean high school students read 34 English words including glide-vowel sequences in word-initial positions and vowel-initial words in a frame sentence. The results showed 2 different error types: glide deletion and vowel distortion. After the analysis of the first recording, the subjects were taught how to pronounce glide-vowel sequences properly in a 60-minute class. Comparison of the analyses of the first and second recordings showed that the subjects improved on the pronunciation of glide-vowel sequences. After the training, the pronunciation errors of diphthongs unique to English, [$j_I$], decreased substantially. However, most subjects still had difficulties in pronouncing [$w{\mho}$], [wu], and [wo]. There was no significant correlation between English course grade and error reduction.

  • PDF

Mapping of the equine herpesvirus type 1 immediate-early protein interaction domain within the general transcription factor human TFIIB

  • Jang, Hyung-Kwan;Cho, Jeong-Gon;Song, Hee-Jong
    • Korean Journal of Veterinary Service
    • /
    • v.25 no.4
    • /
    • pp.333-346
    • /
    • 2002
  • We previously reported that the equine herpesvirus type 1(EHV-1) immediate-early protein(IE protein) physically interacts with the general transcription factor human TFIIB(Jang et al, J Virol 75:10219-10230, 2001). The interaction between the IE protein and TFIIB is necessary for the IE protein to efficiently transactivate the early TK and late IR5 EHV-1 promoters. A panel of deletion and truncation mutants of the TFIIB gene was constructed and employed in protein-binding assays to map the IE protein-binding domain within TFIIB. Evidence is presented that the first direct repeat of TFIIB interacts specifically with the EHV-1 IE protein.

Roles of the meta- and the ortho-Cleavage Pathways for the Efficient Utilization of Aromatic Hydrocarbons by Sphingomonas yanoikuyae Bl

  • 송정민;김영민;Gerben J. Zylstra;김응빈
    • Korean Journal of Microbiology
    • /
    • v.38 no.4
    • /
    • pp.245-245
    • /
    • 2002
  • Catabolic pathways for the degradation of various aromatics by Sphingomonas yanoikuyae Bl are intertwined, joining at the level of substituted benzoates, which are further degraded vita ring cleavage reactions. The mutant strain EK497, which was constructed by deleting a large DNA region containing most of the genes for biphenyl, naphthalene, m-xylene, and m-toluate degradation, was unable to grow on all of the aromatics tested except for benzoate as the sole source of carbon and energy.S. yanoikuyae EK497 was found to possess only catechol ortho-ring cleavage activity due to deletion of the genes for the meta-cleavage pathway. Wild-type S. yanoikuyae Bl grown on benzoate has both catechol orthoand meta-cleavage activity. However, m-xylene and m-toluate, which are metabolized through methylbenzoate, and biphenyl, which is metabolized through benzoate, induce only the meta-cleavage pathway, suggesting the presence of a substrate-dependent induction mechanism.

Deletion of the Lmna Gene Induces Growth Delay and Serum Biochemical Changes in C57BL/6 Mice

  • Ruan, J.;Liu, X.G.;Zheng, H.L.;Li, J.B.;Xiong, X.D.;Zhang, C.L.;Luo, C.Y.;Zhou, Z.J.;Shi, Q.;Weng, Y.G.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.27 no.1
    • /
    • pp.123-130
    • /
    • 2014
  • The A-type lamin deficient mouse line ($Lmna^{-/-}$) has become one of the most frequently used models for providing insights into many different aspects of A-type lamin function. To elucidate the function of Lmna in the growth and metabolism of mice, tissue growth and blood biochemistry were monitored in Lmna-deficient mice, heterozygous ($Lmna^{+/-}$) and wide-type ($Lmna^{+/+}$) backcrossed to C57BL/6 background. At 4 weeks after birth, the weight of various organs of the $Lmna^{-/-}$, $Lmna^{+/-}$ and $Lmna^{+/+}$ mice was measured. A panel of biochemical analyses consisting of 15 serological tests was examined. The results showed that Lmna deficient mice had significantly decreased body weight and increased the ratio of organ to body weight in most of tissues. Compared with $Lmna^{+/+}$ and $Lmna^{+/-}$ mice, $Lmna^{-/-}$ mice exhibited lower levels of ALP (alkaline phosphatase), Chol (cholesterol), CR (creatinine), GLU (glucose), HDL (high-density lipoprotein cholesterol) and higher levels of ALT (alanine aminotransferase) (p<0.05). $Lmna^{-/-}$ mice displayed higher AST (aspartate aminotransferase) values and lower LDL (lowdensity lipoprotein cholesterol), CK-MB (creatine kinase-MB) levels than $Lmna^{+/+}$ mice (p<0.05). There were no significant differences among the three groups of mice with respect to BUN (blood urea nitrogen), CK (creatine kinase), Cyc C (cystatin C), TP (total protein), TG (triacylglycerols) and UA (uric acid) levels (p>0.05). These changes of serological parameters may provide an experimental basis for the elucidation of Lmna gene functions.

Omics-Based Analysis of the luxS Mutation in a Clinical Isolate of Escherichia coli O157:H7 in Korea

  • Kim, Jong-Chul;Yoon, Jang-Won;Kim, Jong-Bae;Oh, Kyung-Hwan;Park, Mi-Sun;Lee, Bok-Kwon;Cho, Seung-Hak
    • Journal of Microbiology and Biotechnology
    • /
    • v.20 no.2
    • /
    • pp.415-424
    • /
    • 2010
  • The purpose of this study was to investigate the relationship between the global regulatory mechanism known as quorum sensing and expression of virulence factors in Escherichia coli O157:87. A nonpolar luxS deletion was introduced into the chromosome of strain CI03J, a human clinical isolate from South Korea, to create the ${\Delta}luxS$ mutant strain ML03J. Phenotypic characterization of wild-type and mutant strains demonstrated that ML03J had no obvious growth or metabolic defects on 0.2% glucose LB medium, produced a functionally defective flagellum, and could not utilize sorbose; the biological significance of sorbose utilization is unknown. Omics-based analysis revealed the involvement of LuxS in the transcriptional activation of several flagella/chemotaxisrelated genes (flhD; fliA, C, D, S, Z; and cheA, Y, Z), repression of glutamate-dependent acid resistance genes (gadAB), and expression of virulence factors including Shiga toxin, hemolysin, and SepD within the LEE pathogenicity island.

Functional assessment of attenuated mutants of Pepper mild mottle virus

  • Yoon, J.Y.;Tsuda, S.;Ryu, K.H.
    • Proceedings of the Korean Society of Plant Pathology Conference
    • /
    • 2003.10a
    • /
    • pp.144.1-144
    • /
    • 2003
  • Attenuated viruses can protect their hosts against challenge to their related viruses. Increasing evidence shows that mutations of the tobamoviral 126/183 kDa protein play a major role in the viral attenuation and contribute to the cross protection mechanism. In this study, four mutants of Pepper mild mottle virus (PMMoV) have been constructed by mutagenesis; two mutants, pTPpoly348 and pTPpoly762, were substituted in the middle of replicase gene, and the others, pTPL3D:: $\Delta$6207 and pTPL3D:: $\Delta$6219, were deletion mutants made by deleting some parts of pseudoknot structures of the 3' noncoding region (NCR) of the virus. Progeny viruses generated from the four mutants were infectious on N. benthamiana plants with symptomless or mild mosaic symptom. Replication efficiency and viral product accumulations of four mutants were assessed by Northern and Western blot analyses on BY-2 protoplast cells. Accumulation of CP for the pTPL3D:: $\Delta$6207 and pTPL3D:: $\Delta$6219 were lower than that of other mutants and wild type virus. These data suggest that the 3'-NCR mutations contribute to the viral gene expression in host tissues, while mutants of replicase gene rather govern the symptom expression.

  • PDF