• Title/Summary/Keyword: infections

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Whole genome sequence of Staphylococcus aureus strain RMI-014804 isolated from pulmonary patient sputum via next-generation sequencing technology

  • Ayesha, Wisal;Asad Ullah;Waheed Anwar;Carlos M. Morel;Syed Shah Hassan
    • Genomics & Informatics
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    • 제21권3호
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    • pp.34.1-34.10
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    • 2023
  • Nosocomial infections, commonly referred to as healthcare-associated infections, are illnesses that patients get while hospitalized and are typically either not yet manifest or may develop. One of the most prevalent nosocomial diseases in hospitalized patients is pneumonia, among the leading causes of mortality and morbidity. Viral, bacterial, and fungal pathogens cause pneumonia. More severe introductions commonly included Staphylococcus aureus, which is at the top of bacterial infections, per World Health Organization reports. The staphylococci, S. aureus, strain RMI-014804, mesophile, on-sporulating, and non-motile bacterium, was isolated from the sputum of a pulmonary patient in Pakistan. Many characteristics of S. aureus strain RMI-014804 have been revealed in this paper, with complete genome sequence and annotation. Our findings indicate that the genome is a single circular 2.82 Mbp long genome with 1,962 protein-coding genes, 15 rRNA, 49 tRNA, 62 pseudogenes, and a GC content of 28.76%. As a result of this genome sequencing analysis, researchers will fully understand the genetic and molecular basis of the virulence of the S. aureus bacteria, which could help prevent the spread of nosocomial infections like pneumonia. Genome analysis of this strain was necessary to identify the specific genes and molecular mechanisms that contribute to its pathogenicity, antibiotic resistance, and genetic diversity, allowing for a more in-depth investigation of its pathogenesis to develop new treatments and preventive measures against infections caused by this bacterium.

Detection of Cytolethal Distending Toxin and Other Virulence Characteristics of Enteropathogenic Escherichia coli Isolates from Diarrheal Patients in Republic of Korea

  • Kim, Jong-Hyun;Kim, Jong-Chul;Choo, Yun-Ae;Jang, Hyun-Chul;Choi, Yeon-Hwa;Chung, Jae-Keun;Cho, Seung-Hak;Park, Mi-Seon;Lee, Bok-Kwon
    • Journal of Microbiology and Biotechnology
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    • 제19권5호
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    • pp.525-529
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    • 2009
  • Cytolethal distending toxins (CDTs) represent an emerging family of newly described bacterial products that are produced by a number of pathogens. The genes encoding these toxins have been identified as a cluster of three adjacent genes, cdtA, cdtB, and cdtC, plus 5 cdt genetic variants, designated as cdt-I, cdt-II, cdt-III, cdt-IV, and cdt-V, have been identified to date. In this study, a general multiplex PCR system designed to detect Escherichia coli cdts was applied to investigate the presence of cdt genes among isolates. As a result, among 366 E. coli strains, 2.7% were found to carry the cdtB gene. In addition, the use of type-specific primers revealed the presence of cdt-I, cdtIV, and cdt-V types of the cdt gene, yet no cdt-II or cdt-III strains. The presence of other virulence genes (stxl, stx2, eae, bfp, espA, espB, and espD) was also investigated using a PCR assay. Among the 10 cdtB gene-positive strains, 8 were identified as COT-producing typical enteropathogenic E. coli (EPEC) strains ($eae^+$, $bfp^+$), whereas 2 were identified as CDT-producing atypical EPEC strains ($eae^+$, $bfp^-$). When comparing the cytotoxic activity of the CDT-producing typical and atypical EPEC strains, the CDT-producing atypical EPEC strains appeared to be less toxic than the CDT-producing typical EPEC strains.

강화 지역주민의 과거 10년간 홍역이환율 및 예방접종율의 변화 -출생년도별 코호트 분석- (Measles Infections and Measles Vaccinations Rates for the Past 10 Years in Kang Wha -A Cohort Observation-)

  • 이용호
    • Journal of Preventive Medicine and Public Health
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    • 제14권1호
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    • pp.43-51
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    • 1981
  • The objective of the study is to measure the changes in measles infection and measles vaccination rates for the past 10 years in a rural area, Kang Wha. The study population were the entire children who were born between 1971 and 1950 in three townships (Sunwon, Naegae, Buleun) in Kangwha County. Two interview surveys were carried out during the 10 years of period, one in 1977 and the other in 1981. The data were collected by Family Health Workers through interview with structured questionnaires. The diagnosis of measles was mainly based on histories, symptoms and sighs of the disease. If a mother had reported measles history of her child, a public physician reviewed and decided the final diagnosis of the reported case. A retrospective cohort observation was done in order to see the trends of measles infections and measles vaccinations. The major findings were as follows; 1. The 5 year prevalence rate of measles vaccinations was 51.3% between 1971 and 1975 and 71.9% between 1976 and 1980 respectively. The difference between two periods was statistically significant (P<0.05). The secular trend of measles vaccinations showed increasing tendency from 1971 to 1978 and since then kept maintained. 2. In the birth cohort analysis of measles vaccinations, the vaccination rates, in general, were higher in the later cohort groups than that of earlier cohort groups. 9. The 5-year experience rates for measles infections were 24.3% between 1971 and 1975 and 17.2% between 1976 and 1980 respectively. This difference was statistically significant(P<0.05). The secular trend of experience rates for measles infections showed decreasing tendency from 1971 to 1980 except an outbreak in 1976. 4. The birth cohort analysis of experience rates for measles infections showed that the rate was higher in the later cohort groups than that of the earlier cohort groups. This decreasing tendency was prominent between $1973{\sim}1974$ and $1976{\sim}1977$. 5. The distribution of age specific incidence rates for measles infections showed unimodal curve with the peak at the age of 12 to 18 months. This findings were same in both two surveys. 6. Seasonal variations of the measles infections showed two peaks, one major peak in March through May and the another minor peak in September through December. 7. The 5-year reduction rate for measles infections among those vaccinated was 90.4% between 1971 and 1975 and 88% between 1976 and 1980.

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치과 진료실 감염예방 실천도의 관련요인 분석 (치과위생사를 중심으로) (Analysis on Relevant Factors in Practice of Prevention for Infections in Dental Clinics - (Focusing on Dental Hygienists))

  • 남영신
    • 치위생과학회지
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    • 제8권3호
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    • pp.189-198
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    • 2008
  • 치과위생사가 치과 진료실에서 감염예방 실천도의 관련 요인을 파악하여 치과위생사의 감염예방 실천도 제고를 위한 기초 자료로 제공하고자 본 연구를 수행하였다. 연구 대상은 2005년 10월과 11월에 인천경기도회와 서울시회 보수교육에 참여한 치과위생사 168명으로 하였으며, 감염예방에 관한 설문조사를 자기기입방식으로 시행하였다. 그 결과는 다음과 같다. 1. 일반적 특성과 실천도 분석 결과, 연령(F=3.237, p=0.024)과 근무 경력(F=3.333, p=0.021)에서 유의한 실천도 점수의 차이가 있었다. 2. 일반적 특성과 교육경험 여부는 근무처(X=19.823, p=0.001)에 따라, 지식도는 연령(F=4.895, p=0.003)에 따라 통계적으로 유의한 차이를 보였다. 3. 감염예방 교육경험이 있는 경우가 경험이 없는 경우에 비해 감염예방 실천도 점수가 높았다(t=3.315, p=0.001). 4. 지식도와 실천도의 상관관계 분석 결과는 통계적으로 유의하였다(p < 0.05). 5. 감염예방 교육경험에 따른 지식도 분석 결과, 교육경험이 있는 경우가 지식도 점수가 높게 나타났지만 통계적으로 유의한 차이는 없었다(t=1.336, p=0.183). 6. 조직관련요인과 실천도는 통계적으로 유의한 상관관계를 보였다(p < 0.01). 7. 감염예방 실천도의 관련요인 분석 결과에서는 조직관련요인이 높을수록 지식도가 높을수록 교육경험이 많을수록 근무경력이 많을수록 감염예방 실천도가 높게 나타났다.($R^2=0.32$). 위의 분석 결과 치과위생사의 감염예방 실천도 제고를 위해서는 학교의 교육과정에 감염 예방에 대한 내용을 다루어 치위생과 학생들의 감염예방 지식도를 높이고, 학교 졸업 후에도 근무병원 자체교육과 보수교육 등을 통한 지속적인 교육과 홍보를 할 수 있는 프로그램을 개발해야하며, 가장 중요한 것은 치과위생사들이 스스로에게 안전한 근무 환경을 조성하도록 조직의 적극적인 노력과 관심이 필요할 것으로 판단된다.

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건강보험청구자료를 이용한 외래 급성 호흡기계 질환 방문과 항생제 처방률 변화 분석 (The Trend of Acute Respiratory Tract Infections and Antibiotic Prescription Rates in Outpatient Settings using Health Insurance Data)

  • 김지애;박주희;김보연;김동숙
    • 한국임상약학회지
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    • 제27권3호
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    • pp.186-194
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    • 2017
  • Objectives: A significant concern has been raised about the emerging resistance that is largely caused by the excessive or inappropriate use of antibacterial agents for viral respiratory infections. This study investigated the trend of respiratory tract infections (RTIs) and the use of antibiotics. Methods: Utilizing the national level health insurance claims data from 2005 to 2008, we examined encounter days, antibiotic use, and the prescription rate for respiratory tract infections including upper respiratory tract infections (URTIs), lower respiratory tract infections (LRTIs), and otitis media in outpatient settings. The antibiotic use was measured as defined daily dose per 1,000 patients per day (DDD/1,000 patients/day). Results: The visit for URTI increased from 141,693,465 in 2005 to 120,717,966 in 2008 and the visit for LRTI decreased from 61,778,718 to 66,930,122. For RTIs, prescription rates of antibiotics decreased from 65.2% to 58.5% for URTIs and 76.9% to 68.3% for LRTIs from 2005 to 2008. The antibiotic use decreased to 20.85 DDD/1,000 patients/day after a significant increase of 22.01 DDD/1,000 patients/day in 2006. Among antibiotics, J01CR had the highest use- 7.93 DDD/1,000 patients/day followed by J01DC of 3.71 DDD/1,000 patients/day and J01FA of 3.2 DDD/1,000 patients/day. One notable trend is that J01FA presented a continuous increase in antibiotic use from 2.3 in 2005 to 3.26 DDD/1,000 patients/day in 2008. Conclusion: The use of antibiotics had poor compliance to guidelines for RTIs. Despite decrease in the use of antibiotics, prescription rates for URTIs were still about 50% indicating that the delayed prescribing antibiotics (or wait-and-see) were not observed.

경북지방(慶北地方)에 수입(輸入)된 Canada 산(産) 유우(乳牛)의 Piroplasma 감염피해(感染被害)에 관(關)한 조사보고(調査報告)(II) 수개목장(數個牧場) 사육우(飼育牛)의 Piroplasma 감염상황(感染狀況)과 치료성적(治療成績)에 관하여 (Piroplasma Infections of Canadian Dairy Cattle Imported to GeongBuk, Korea: Piroplasma Infections in Several Farms)

  • 손제영;유동열;김교준
    • 대한수의학회지
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    • 제12권1호
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    • pp.59-66
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    • 1972
  • A survey of piroplasma infections, and trials of therapy of dairy cattle imported from Canada were conducted. The studies were carried out by hematological and clinical examinations, from May to September, 1970. The result obtained were summarized as follows: 1. A considerable damages due to Babesia and Theileria infections of dairy cattle were observed in several dairy farms where Pamaquine and Quinuroneum sulphate treatment was applied. 2. The infection was more commonly found in farms where Korean native cattle was raised previously. 3. The dairy cattle raised on pasture which is lightly infected with ticks were mostly infected with Theileria. The infected cattle were easily recovered after treatment with Pamaquine. 4. Leukocytosis and the left shift of neutrophils were observed in the cattle showing mixed infection with Babesia and Theileria.

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Novel respiratory infectious diseases in Korea

  • Kim, Hyun Jung
    • Journal of Yeungnam Medical Science
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    • 제37권4호
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    • pp.286-295
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    • 2020
  • Respiratory infections are very common and highly contagious. Respiratory infectious diseases affect not only the person infected but also the family members and the society. As medical sciences advance, several diseases have been conquered; however, the impact of novel infectious diseases on the society is enormous. As the clinical presentation of respiratory infections is similar regardless of the pathogen, the causative agent is not distinguishable by symptoms alone. Moreover, it is difficult to develop a cure because of the various viral mutations. Various respiratory infectious diseases ranging from influenza, which threaten the health of mankind globally, to the coronavirus disease 2019, which resulted in a pandemic, exist. Contrary to human expectations that development in health care and improvement in hygiene will conquer infectious diseases, humankind's health and social systems are threatened by novel infectious diseases. Owing to the development of transport and trading activity, the rate of spread of new infectious diseases is increasing. As respiratory infections can threaten the members of the global community at any time, investigations on preventing the transmission of these diseases as well as development of effective antivirals and vaccines are of utmost importance and require a worldwide effort.

Prevalence and Determinants of High-risk Human Papillomavirus Infection in Women with High Socioeconomic Status in Seoul, Republic of Korea

  • Kim, Ki-Dong;Kim, Jin-Ju;Kim, Sun-Mie;No, Jae-Hong;Kim, Yong-Beom
    • Asian Pacific Journal of Cancer Prevention
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    • 제13권1호
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    • pp.269-273
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    • 2012
  • We aimed to estimate the prevalence of high-risk human papillomavirus (HPV) infections in women of high socioeconomic status (SES) in Seoul, Republic of Korea and to identify risk factors. This study included 13,386 women visiting a prestigious healthcare center located in Seoul between 2003 and 2008. High-risk HPV infections were detected in 994 (7%) and the age-standardized prevalence was 8%. Abnormal Pap smear results ${\geq}$ atypical squamous cells of unknown significance (ASCUS) were observed in 280 of 12,080 women (2%). Based on univariate analysis, age, level of education and number of children were associated with high-risk HPV infections. Based on multivariate analysis, age and high-risk HPV infections had an inverse relationship. In women with high SES in Seoul, the prevalence of high-risk HPV infection was 7% and the age-standardized prevalence was 8%. Age was a strong determinant of high-risk HPV infection.

Extremely Increased Serum Carbohydrate Antigen 19-9 Levels Caused by New or Resistant Infections to Previous Antibiotics in Chronic Lung Diseases

  • Shin, Ji Young;Yoo, Su Jin;Park, Bo Mi;Jung, Sung Su;Kim, Ju Ock;Lee, Jeong Eun
    • Tuberculosis and Respiratory Diseases
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    • 제75권3호
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    • pp.125-127
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    • 2013
  • In this paper, we describe 72-year-old female patient without evidence of malignant disease presented with significantly elevated serum carbohydrate antigen (CA) 19-9 levels by respiratory infections. She was diagnosed with respiratory infections due to Mycobacterium avium complex and Pseudomonas aeruginosa. The serum CA 19-9 levels remarkably increased (1,453-5,300 U/mL; reference range, <37 U/mL) by respiratory infection and abruptly decreased (357-534 U/mL) whenever infection was controlled by specific treatments. This case suggests that serum CA 19-9 levels may be used as a diagnostic marker to indicate new or resistant infections to previous antibiotics in chronic lung diseases without significant changes in chest X-ray findings.

생후 43일 영아에서 발생한 A군 β용혈성 연구균에 의한 뇌수막염 1례 (Group A Streptococcal Meningitis Occurring in a Heathy 43-day-old Infant)

  • 조상민;박소영;이수영;최상림;정대철;정승연;강진한
    • Pediatric Infection and Vaccine
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    • 제12권2호
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    • pp.213-217
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    • 2005
  • 저자들은 건강하던 43일된 영아에서 신경학적 후유증으로 좌측 감각신경성 난청과 경련이 발생한 A군 ${\beta}$용혈성 연구균에 의한 뇌수막염 1례를 경험하였기에 문헌 고찰과 함께 보고하는 바이다.

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