• Title/Summary/Keyword: hybrid identification

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Identification of Heterosis QTLs for Yield and Yield-Related Traits in Indica-Japonica Recombinant Inbred Lines of Rice (Oryza sativa L.)

  • Kim, Chang-Kug;Chu, Sang-Ho;Park, Han Yong;Seo, Jeonghwan;Kim, Backki;Lee, Gileung;Koh, Hee-Jong;Chin, Joong Hyoun
    • Plant Breeding and Biotechnology
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    • v.5 no.4
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    • pp.371-389
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    • 2017
  • Supplying sufficient rice to growing populations is a global challenge. Hybrid indica rice varieties exploiting heterosis have increased yields, but inter-subspecific crosses between indica and japonica varieties are hampered by sterility. Examination and genetic understanding of yield heterosis in indica/japonica crosses addressing yield barriers are basic requirements. In this study, QTLs for heterosis of yield traits were identified in indica-japonica recombinant inbred lines (RILs) using a total of 178 RILs originating from Dasanbyeo (indica) ${\times}$ TR22183 (japonica) (DT-RILs) and their backcrossed populations. Nine of sixty-six major quantitative trait loci (QTLs) identified in DT-RILs exhibited heterosis. Heterosis QTLs clustered with other traits on chromosomes 1, 4, and 8, and clusters were conserved between different RILs. The clusters contained several known yield enhancement genes/QTLs. Specific heterotic allele combinations contributed to four major heterosis QTLs, particularly for panicle and spikelet number traits. Heterosis for yield and yield-related traits was explained by the harmonized effects of overdominance, dominance, and epistatic interactions in inter-subspecific breeding populations.

The identification of novel regions for reproduction trait in Landrace and Large White pigs using a single step genome-wide association study

  • Suwannasing, Rattikan;Duangjinda, Monchai;Boonkum, Wuttigrai;Taharnklaew, Rutjawate;Tuangsithtanon, Komson
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.12
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    • pp.1852-1862
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    • 2018
  • Objective: The purpose of this study was to investigate a single step genome-wide association study (ssGWAS) for identifying genomic regions affecting reproductive traits in Landrace and Large White pigs. Methods: The traits included the number of pigs weaned per sow per year (PWSY), the number of litters per sow per year (LSY), pigs weaned per litters (PWL), born alive per litters (BAL), non-productive day (NPD) and wean to conception interval per litters (W2CL). A total of 321 animals (140 Landrace and 181 Large White pigs) were genotyped with the Illumina Porcine SNP 60k BeadChip, containing 61,177 single nucleotide polymorphisms (SNPs), while multiple traits single-step genomic BLUP method was used to calculate variances of 5 SNP windows for 11,048 Landrace and 13,985 Large White data records. Results: The outcome of ssGWAS on the reproductive traits identified twenty-five and twenty-two SNPs associated with reproductive traits in Landrace and Large White, respectively. Three known genes were identified to be candidate genes in Landrace pigs including retinol binding protein 7, and ubiquitination factor E4B genes for PWL, BAL, W2CL, and PWSY and one gene, solute carrier organic anion transporter family member 6A1, for LSY and NPD. Meanwhile, five genes were identified to be candidate genes in Large White, two of which, aldehyde dehydrogenase 1 family member A3 and leucine rich repeat kinase 1, associated with all of six reproduction traits and three genes; retrotransposon Gag like 4, transient receptor potential cation channel subfamily C member 5, and LHFPL tetraspan subfamily member 1 for five traits except W2CL. Conclusion: The genomic regions identified in this study provided a start-up point for marker assisted selection and estimating genomic breeding values for improving reproductive traits in commercial pig populations.

The Process of Racialization in the Hybrid Age-focusing on Chang Rae Lee's Aloft (혼종화 시대의 인종화 프로세스-이창래의 『비상』을 중심으로)

  • Lee, Seonju
    • English & American cultural studies
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    • v.14 no.1
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    • pp.141-167
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    • 2014
  • The macro structural perspective of how race was formed nationally, politically, and socially has greatly contributed in revealing the ills of racialism until now, likewise, the dichotomous form of Asian-American literature corresponding to such perspective has made great contribution in awakening people's awareness of race. While acknowledging the contribution of such macro perspectives, we must take note that today's racialism is becoming materialized in different aspects. The tendency of present racial formation is that the recognition of race is spread out lightly but widely in everyday lives and is revealed through the perception of our body. While publicly stating that society is color-blind and inequality significantly resolved, racialism emerges in the personal and everyday aspects. Not erased but diluted and spread out more widely, and the more diluted, harder to erase, racialism has penetrated into the perception of our lives. Racialism works not as a conspicuous discrimination but as a common sense that is 'naturally' absorbed into our perception and perspective. Chang Rae Lee's Aloft shows the process of such racial formation in our age of hybridization. This study tries to clarify why present racial formation must be analyzed in the macro perceptual perspective and show how the racial perception in the narrative of the white dominant narrator, Jerry, becomes the field where he lives and how it is spread through his perception. Through the theories of Judith Butler and Linda M. Alcoff, this study analyzes how people are got to self-identification with the racialization through reiteration and what the relationship is between racial formation and the subject's performativity in Aloft. The study concludes that revealing such current processes of racial formation perceptively is not thinking it 'natural' and inevitable but the process of bringing about a change in it.

Implementation of Hybrid Smartcard Using Multi Encryption Method (다중 암호화 기법을 활용한 하이브리드 스마트카드 구현)

  • 이성은;장홍종;박인재;한선영
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.13 no.2
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    • pp.81-89
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    • 2003
  • With the rapid development of information and communication technology, online dissemination increases rapidly. So, It becomes more important to protect information. Recently the authentication system using public key infrastructure (PKI) is being utilized as an information protection infrastructure for electronic business transactions. And the smartcard system makes the most use of such an infrastructure. But because the certification based on the current PKI provides oかy basic user certification information, the use has to be limited in various application services that need the identification and authorization information as well as face-to-face information of the user. In order to protect a system from various kinds backings and related treats, we have proposed angular and private key multiplexing for prevention of smartcard forgery and alteration based on a photopolymer cryptosystem. When smartcard becomes prone to forgery and alteration, we should be able to verify it. Also, our parer proposes a new authentication system using multi authentication based on PKI. The smartcard has an excellent advantage in security and moving.

A multi-layer approach to DN 50 electric valve fault diagnosis using shallow-deep intelligent models

  • Liu, Yong-kuo;Zhou, Wen;Ayodeji, Abiodun;Zhou, Xin-qiu;Peng, Min-jun;Chao, Nan
    • Nuclear Engineering and Technology
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    • v.53 no.1
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    • pp.148-163
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    • 2021
  • Timely fault identification is important for safe and reliable operation of the electric valve system. Many research works have utilized different data-driven approach for fault diagnosis in complex systems. However, they do not consider specific characteristics of critical control components such as electric valves. This work presents an integrated shallow-deep fault diagnostic model, developed based on signals extracted from DN50 electric valve. First, the local optimal issue of particle swarm optimization algorithm is solved by optimizing the weight search capability, the particle speed, and position update strategy. Then, to develop a shallow diagnostic model, the modified particle swarm algorithm is combined with support vector machine to form a hybrid improved particle swarm-support vector machine (IPs-SVM). To decouple the influence of the background noise, the wavelet packet transform method is used to reconstruct the vibration signal. Thereafter, the IPs-SVM is used to classify phase imbalance and damaged valve faults, and the performance was evaluated against other models developed using the conventional SVM and particle swarm optimized SVM. Secondly, three different deep belief network (DBN) models are developed, using different acoustic signal structures: raw signal, wavelet transformed signal and time-series (sequential) signal. The models are developed to estimate internal leakage sizes in the electric valve. The predictive performance of the DBN and the evaluation results of the proposed IPs-SVM are also presented in this paper.

SHM data anomaly classification using machine learning strategies: A comparative study

  • Chou, Jau-Yu;Fu, Yuguang;Huang, Shieh-Kung;Chang, Chia-Ming
    • Smart Structures and Systems
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    • v.29 no.1
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    • pp.77-91
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    • 2022
  • Various monitoring systems have been implemented in civil infrastructure to ensure structural safety and integrity. In long-term monitoring, these systems generate a large amount of data, where anomalies are not unusual and can pose unique challenges for structural health monitoring applications, such as system identification and damage detection. Therefore, developing efficient techniques is quite essential to recognize the anomalies in monitoring data. In this study, several machine learning techniques are explored and implemented to detect and classify various types of data anomalies. A field dataset, which consists of one month long acceleration data obtained from a long-span cable-stayed bridge in China, is employed to examine the machine learning techniques for automated data anomaly detection. These techniques include the statistic-based pattern recognition network, spectrogram-based convolutional neural network, image-based time history convolutional neural network, image-based time-frequency hybrid convolution neural network (GoogLeNet), and proposed ensemble neural network model. The ensemble model deliberately combines different machine learning models to enhance anomaly classification performance. The results show that all these techniques can successfully detect and classify six types of data anomalies (i.e., missing, minor, outlier, square, trend, drift). Moreover, both image-based time history convolutional neural network and GoogLeNet are further investigated for the capability of autonomous online anomaly classification and found to effectively classify anomalies with decent performance. As seen in comparison with accuracy, the proposed ensemble neural network model outperforms the other three machine learning techniques. This study also evaluates the proposed ensemble neural network model to a blind test dataset. As found in the results, this ensemble model is effective for data anomaly detection and applicable for the signal characteristics changing over time.

Multi-Obfuscation Approach for Preserving Privacy in Smart Transportation

  • Sami S. Albouq;Adnan Ani Sen;Nabile Almoshfi;Mohammad Bin Sedeq;Nour Bahbouth
    • International Journal of Computer Science & Network Security
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    • v.23 no.4
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    • pp.139-145
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    • 2023
  • These days, protecting location privacy has become essential and really challenging, especially protecting it from smart applications and services that rely on Location-Based Services (LBS). As the technology and the services that are based on it are developed, the capability and the experience of the attackers are increased. Therefore, the traditional protection ways cannot be enough and are unable to fully ensure and preserve privacy. Previously, a hybrid approach to privacy has been introduced. It used an obfuscation technique, called Double-Obfuscation Approach (DOA), to improve the privacy level. However, this approach has some weaknesses. The most important ones are the fog nodes that have been overloaded due to the number of communications. It is also unable to prevent the Tracking and Identification attacks in the Mix-Zone technique. For these reasons, this paper introduces a developed and enhanced approach, called Multi-Obfuscation Approach (MOA that mainly depends on the communication between neighboring fog nodes to overcome the drawbacks of the previous approach. As a result, this will increase the resistance to new kinds of attacks and enhance processing. Meanwhile, this approach will increase the level of the users' privacy and their locations protection. To do so, a big enough memory is needed on the users' sides, which already is available these days on their devices. The simulation and the comparison prove that the new approach (MOA) exceeds the DOA in many Standards for privacy protection approaches.

Evaluation on the Lost Prestressing Force of an External Tendon Using the Combination of FEM and HGA: II. Experimental Verification and Field Applications (FEM과 HGA의 조합을 이용한 외부 긴장재의 손실 긴장력 평가: II. 실험적 검증 및 현장적용)

  • Jang, Hang-Teak;Noh, Myung-Hyun;Park, Kyu-Sik;Park, Taehyo
    • Journal of the Korea institute for structural maintenance and inspection
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    • v.13 no.5 s.57
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    • pp.121-132
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    • 2009
  • This paper introduces an experimental verification and a field application of the proposed technique using the combination of FEM and HGA about the loss prestressing force of an exteranl tendon by above same authors. The vibration tests have been conducted by using a laboratory models and the externally prestressed tendon at the field and the natural frequencies are extracted from the vibration tests. The proposed technique based on the extracted natural frequencies is applied. It is seen that the errors in the tension and lost prestressing force by proposed technique are about 4% from a laboratory model test. For the model verification at field, exact modeling has beem made with Rayleigh damping. It is seen that the error in the tension by proposed technique is less than 1% and the estimated lost prestressing force converges less than the exact value.

Studies on the Species Crossabilities in the Genus Pinus and Principal Characteristics of F1 Hybrids (일대잡종송(一代雜種松)의 교배친화력(交配親和力)과 특성(特性)에 관(關)한 연구(硏究))

  • Ahn, Kun Yong
    • Journal of Korean Society of Forest Science
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    • v.16 no.1
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    • pp.1-32
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    • 1972
  • By means of the interspecific hybridization in the Sub-genus Diploxylon of the Genus Pinus, $F_1$ hybrids of Pinus rigida${\times}$elliottii, Pinus rigida${\times}$radiata, P. rigida${\times}$serotina and P. densiflora${\times}$thunbergii had been produced. And on the basis of the crossabilities of these hybrids the taxonomic affinities of these pines were examined. And the needle characteristics of these hybrid and the occurence of phenolic substances in these $F_1$ hybrid were also investigated to see the potential usefulness of these characteristics for the diagnosis of the taxonomic affinity. And, the growth performances of the $F_1$ hybrids have also been compared with those of parental species. In order to contribute to the establishment of the hybrid seed orchard the introgression phenomena between P. densiflora and P. thunbergii in the eastern coastal area have also been investigated along with the investigation of the heterozygosity of plus trees of P. densiflora growing in the clone bank in Suwon. And the results were summarized as follows. 1. On the basis of crossabilities as well as on the taxonomic affinities according to the systems of Shaw, Pilger and Duffield, it has been proven that the parental species of those hybrids are of close affinities and range of the fertile hybrid seed production rate was as high as 28-58% in the best hybrid combination (Table 13). 2. Among those hybrids, the ${\times}$ Pinus, rigiserotina hybrid seemed to be most promising in the growth performance exhibiting 109-155% more volume growth compared to the seed parent with the statistic significance of 1% level (Tables 16 and 17). 3. Notwithstanding the fact that the all of the pollen parents are cold tender, all hybrids exhibit cold hardiness as much as their seed parent and it seems to suggest that the characteristics of cold hardiness were transmitted from the seed parent. 4. Though a striking difference in needle length was observed between the parental species of each hybrid, it was difficult to distinguish each hybrid from their seed parent by the needle length except ${\times}$P. rigiserotina which is characterized by long needle which is 65% more longer than the needle of the seed parent (Table 21). 5. With regard to the anatomical characteristics of needle, the hypoderm is apparently thicker in most of the $F_1$ hybrid pines and the characteristics of resin canals are dominated by medial in most $F_1$ hybrid. And, the fibrovascular bundles were apart as were in their seed parent. Therefore it was found to be possible to distinguish the hybrids pines from their parents by the needle characteristics. And, it is to be noticed that the ${\times}$P. densithunbergii was more close to the pollen parent having RDI value of 0.73 (Fig.l, Table 22). 6. It has been demonstrated that ${\times}$P. rigielliottii, ${\times}$P. rigiradiata and ${\times}$P. rigitaeda have a phenolic substance (No.7) of light yellow at Rf-0.46, same as their seed parent, but no trace of phenolic substance was observed in their pollen parent. This fact will serve as an important criteria for early identification of hybridity in progeny testing. However, the fact that both of ${\times}$P. rigiserotina and ${\times}$P. densithunbergii exhibit the same reactions of phenolic substances as well their parental species seems to indicate the close affinities between the parental species of the respective hybrid (Fig.2, Table 23). 7. The separation and the reaction of phenolic substance developed on TLC were found to be same in the same species showing no variations between the individuals, and no variations due to tree part of sampling, tree age or pollen sources. And the reaction was also observed regardless of the not varied by the kind of developing solvent whether it is Aceton-Chloroform (3:7 v/v) or Benzene-Methanol-Acetic acid (90:16:8 v/v). 8. The introgression phenomena of natural Pinus densifiora stand in both east and west coastal area indicates that the major part of the red pines investigated are all heterozygous and the heterozygosity of pines are higher in the west coast than in the east coast(Tables 24 and 25). 9. Based on the RDI, among the plus trees of Pinus densiflora selected in Korea and Japan as well, no pure P. densiflora has been found. Since all of the sample trees of Pinus densiflora were found to be as heterozygous bearing part of the characteristics of P. thunbergii, those red pines were considered to be natural heterotic hybrid pines(Figs. 3 and 4. Tables 26 and 27).

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Effect of Planting Date and Hybrid on Forage Yield and Quality of Corn for Silage. II. Fiber component and digestibility of ear, stover and whole plant (파종시기 및 품종이 사일리지용 옥수수의 수량과 사료가치에 미치는 영향 II. 경엽, 암이삭 및 전식물체의 섬유소 및 소화율)

  • Kim, J.D.;Kim, D.A.;Lee, J.K.;Kim, J.G.;Kang, W.S.
    • Journal of The Korean Society of Grassland and Forage Science
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    • v.19 no.3
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    • pp.221-232
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    • 1999
  • Dry matter yield and ear percent are commonly considered the most important factors for evaluating silage corn(Zea mays L.) hybrids for silage production. But quality of stover as well as forage production in important in identification of hybrids. The objective of this study was to evaluate nutritional value of stover, ear and whole plant from eight corn hybrids for silage at two dates of planting. In content of fiber components(ADF, NDF, ADL, hemicellulose and cellulose) from stover, ear and whole plant samples, optimum planting corn was lower than late planting one(P<0.01). Differences(P<0.01) in the content of fiber components in stover and whole plant were observed among the corn hybrids. Differences between different planting dates in TDN and $NE_1$ were detected in the stover and whole plant samples(P<0.05). Differences among the corn hybrids in TDN and $NE_1$ were also observed in stover, ear and whole plant samples. TDN and $NE_1$ of 'G4624', 'P3352' and 'P3394' for whole plant were higher than those of the other corn hybrids. ln vitro dry matter digestibility(IVDMD) at optimum planting date was higher than that of late(P<0.05), and there also were significant differences among the corn hybrids. Correlation coefficients for whole plant IVDMD with NDF, ADF, hemicellulose, and cellulose were $-0.82^{**}$, $-0.71^{**}$, $-0.63^{**}$, and $-0.69^{**}$, respectively. Results of this study indicate that optimum planting of corn resulted in increased quality of silage corn. Differences among corn hybrid, particularly, in nutritive value of stover and whole plant were also observed. Therefore, the nutritional value of stover and whole plant may be important in assessing the corn hybrids for silage.

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