• 제목/요약/키워드: high-throughput screening

검색결과 182건 처리시간 0.02초

적외선 분광스펙트럼 및 기체크로마토그라피 분석 데이터의 다변량 통계분석을 이용한 대두 종자 지방산 함량예측 (Simultaneous estimation of fatty acids contents from soybean seeds using fourier transform infrared spectroscopy and gas chromatography by multivariate analysis)

  • 안명숙;지은이;송승엽;안준우;정원중;민성란;김석원
    • Journal of Plant Biotechnology
    • /
    • 제42권1호
    • /
    • pp.60-70
    • /
    • 2015
  • 본 연구의 목적은 적외선 분광스펙트럼 데이터를 이용하여 대두 종자내의 지방산 함량을 동시에 예측할 수 있는지 여부를 조사하기 위한 것이다. 총 153종의 대두(Glycine max Merrill) 종자로부터 적외선 분광스펙트럼 및 지방산의 함량을 기체크로마토그라피 분석을 통하여 확인하였다. 적외선 분광스펙트럼 조사결과 대두는 단백질이나 아미노산의 amide bond region ($1,700{\sim}1,500cm^{-1}$), 핵산이나 인지질의 phosphodiester groups ($1,500{\sim}1,300cm^{-1}$) 그리고 탄수화물 등 다당류의 sugar region ($1,200{\sim}1,000cm^{-1}$)에서 계통별로 큰 차이가 이루어짐을 알 수 있었다. 총 29라인의 대두 계통별 시료로부터 지방산 함량을 조사한 결과 총 지방산의 함량은 건조 시료 0.1 g 당 $185.57{\mu}g$에서 $325.9{\mu}g$으로 계통간에 차이가 있었음을 알 수 있었으며 평균 함량은 $244.48{\mu}g$이었다. PLS regression 분석을 이용하여 총 5개 지방산(팔미틱산, 스테아릭산, 올레익산, 리노레익산 그리고 리노레닉산) 함량 예측 calibration models의 실측 검증 결과, 팔미틱산($R^2=0.8002$), 올레익산($R^2=0.8909$) 그리고 리노레익산($R^2=0.815$)은 회귀분석 상관계수가 0.8 이상으로 정확도 높음을 알 수 있었다. 그러나 스테아릭산($R^2=0.4598$)과 리노레닉산($R^2=0.6868$)의 경우 상관계수가 0.7 이하로 상대적으로 예측정확도가 낮음을 알 수 있었다. 본 연구에서 확립된 기술은 지방산의 조성 변환을 통하여 새로운 대두 품종 개발을 위한 계통선발 과정에서 매우 효율적인 수단으로 활용이 가능할 것으로 사료된다. 더 나아가 본 기술은 대두는 물론 대두 유래 농산물이나 식품의 품질 검증 수단으로 활용이 가능할 것으로 기대된다.

cDNA Microarray를 이용한 구강편평세포암종 세포주에서 $Taxol^{(R)}$과 Cyclosporin A로 유도된 유전자 발현양상 (GENE EXPRESSION PATTERNS INDUCED BY $TAXOL^{(R)}$ AND CYCLOSPORIN A IN ORAL SQUAMOUS CELL CARCINOMA CELL LINE USING CDNA MICROARRAY)

  • 김용관;이재훈;김철환
    • Maxillofacial Plastic and Reconstructive Surgery
    • /
    • 제28권3호
    • /
    • pp.202-212
    • /
    • 2006
  • It is well-known that paclitaxel($Taxol^{(R)}$), which is extracted from the pacific and English yew, has been used as a chemotherapeutic agent for ovarian carcinoma and advanced breast carcinoma and Cyclosporin A, which is highly lipophilic cyclic peptide and isolated from a fungus, has been also used as an useful immunosuppressive drug after transplantation and is associated with cellular apoptosis. Since 1953, in which James Watson, Rosalind Franklin and Francis Crick discovered the double helical structure of DNA, a few kinds of techniques for identifying gene expression have been developed. In postgenomic period, many of researchers have used the DNA microarray which is high throughput screening technique to screen large numbers of gene expression simultaneously. In this study, we searched and screened the gene expression in the oral squamous cell carcinoma cell lines treated with $Taxol^{(R)}$, cyclosporin or cyclosporin combined with $Taxol^{(R)}$ using cDNA microarray. The results were as following; 1. It was useful that the appropriate concentration of Cyclosporin A and $Taxol^{(R)}$ used in oral squamous cell carcinoma cell line was under 1${\mu}g/ml$ and 3${\mu}g/ml$. 2. In the experimental group in which $Taxol^{(R)}$ and $Taxol^{(R)}$ + Cyclosporin A were used, the cell growth was extremely decreased. 3. In the group in which Cyclosporin A was used, the MTT assay was rarely decreased which means the activity of succinyl dehydrogenase is remained in mitochondria but in the group in which the mixture of Cyclosporin A and $Taxol^{(R)}$ were used, the MTT assay was extremely decreased. 4. In the each group in which Cyclosporin A(3 ${\mu}g/ml$) and $Taxol^{(R)}$(1 ${\mu}g/ml$) were used, the cell arrest was appeared in $G_2/M$ phase and in the group in which $Taxol^{(R)}$(3 ${\mu}g/ml$) was used, the cell arrest was appeared in both S phase and $G_2/M$ phase. 5. In the oral squamous cell carcinoma cell line treated with $Taxol^{(R)}$, several genes including ANGPTL4, RALBP1 and TXNRD1, associated with apoptosis, SUI1, MAC30, RRAGA and CTGF, related with cell growth, HUS1 and DUSP5, related with cell cycle and proliferation, ATF4 and CEBPG, associated with transcription factor, BTG1 and VEGF, associated with angiogenesis, FDPS, FCER1G, GPA33 and EPHA4 associated with signal transduction and receptor activity and AKR1C2 and UGTA10 related with carcinogenesis were detected in increased levels. The genes that showed increaced expression in the oral squamous cell carcinoma cell line treated with Cyclosporin A were CYR61, SERPINB2, SSR3 and UPA3A which are known as genes associated with cell growth, carcinogenesis, receptor activity and transcription factor. The genes expressed in the HN22 cell line treated with cyclosporin combined with $taxol^{(R)}$ were ALCAM and GTSE1 associated with cancer invasiveness and cell cycle regulation.