• Proceedings of the Korea Contents Association Conference
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• 2003.05a
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• pp.356-360
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• 2003

There have been many considerations to develop new content services that integrate a variety of contents databases being already constructed and then produce new content services which are more valuable than existing services in many applications such as Internet portal, EC, and CRM. By doing the above thing, the burden of searching databases to access interesting databases and service applications can be reduced and the database availability of users is also enhanced through a single view integrating multiple contents database. This paper presents implementation details of the query processing system that is a core component of the database integration system, which can construct a virtual database that integrates databases being managed by multiple heterogeneous database systems using XML data model and support a quay facility on the integrated database.

• Journal of Korea Society of Industrial Information Systems
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• v.6 no.3
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• pp.51-64
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• 2001

Schema integration is one of the most difficult issues in the heterogeneous and distributed geographic database systems (GDSs). As the use of spatial information in various application areas becomes increasingly popular, the integration of geographic information has become a crucial task for decision makers. Most existing schema integration techniques described in the database literature, however, do not address the problems of managing heterogeneities among complex objects that contain visual data and/or spatial and temporal information. The difficulties arise not only from the semantic conflicts, but also from the different representations of spatial models. Consequently, it is much more complex to achieve interoperability in the area of geographic databases. This research attempts to provide a solution to such problems. The research reported in this paper describes a schema integration methodology and a prototype toolkit developed to assist in schema integration activities for GDSs.

• Journal of Korea Spatial Information System Society
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• v.2 no.2 s.4
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• pp.49-58
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• 2000

With the growing realization that the GIS data management becomes important more than ever, a great deal of the spatial data is being digitalized through various GIS projects, such as NGIS project. However, the integrated search and analysis for GIS data are highly constrained by the databases being heterogeneous and distributed among organizations. This paper is to introduce the system developed to solve the problem of interoperability in the heterogeneous and distributed databases environment. The system architecture is presented which is composed of spatial data servers, nodes, and a gateway. Also, the paper provides the implementation details of the client application to access and analyze the distributed and heterogeneous spatial data with the standardized interface. Finally, based on the technical architecture, the korea spatial data infrastructure is explained.

• Journal of KIISE:Software and Applications
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• v.31 no.11
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• pp.1505-1518
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• 2004

We propose an extremely light DDXMI approach for semi-automated integration of both structurally and semantically heterogeneous distributed XML documents. In the proposed prototype, a DDXMI(Distributed Documents XML Metadata Interface) is defined and a user interface generator is developed. The prototype takes sources' DTDs as inputs and generates a friendly graphical user interface for the application users. The user can easily describe the semantic mapping between the integrated virtual database DTD and sources' DTDs through assigning index numbers and specifying associated function names so that the DDXMI based on the mappings is automatically generated. Quilt is selected as the XML query language which processes user queries according to the DDXMI. It is assumed that the application users know what they want from the different sources, that is, they have their own integrated database schema in their mind, and know the semantics of the involved XML databases. A small-size global DTD and a mid-size global DTB are generated to verify the rluery generation and retrieval results with 3 XML document databases, that is, Master/ph.D thesis, research reports, and journal databases. The system has been developed with JavaCC and Java Servelet.

• Journal of KIISE:Databases
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• v.35 no.2
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• pp.132-142
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• 2008

In biological domain, there exist a variety of protein analysis databases which have their own meaning toward the same target of protein. If we integrate these scattered heterogeneous data efficiently, we can obtain useful information which otherwise cannot be found from each original source. Reflecting the characteristics of biological data, each data source has its own syntax and semantics. If we describe these data through RDF(S) models, one of the Semantic Web standards, we can achieve not only syntactic but also semantic integration. In this paper, we propose a new concept of integration layer based on the RDF unified schema. As a conceptual model, we construct a unified schema focusing on the protein information; as a representational model, we propose a technique for the wrappers to aggregate necessary information from the relevant sources and dynamically generate RDF instances. Two example queries show that our integration layer succeeds in processing the integrated requests from users and displaying the appropriate results.

• Molecular & Cellular Toxicology
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• v.3 no.3
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• pp.208-213
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• 2007

With the help of a development and popularization of microarray technology that enable to us to simultaneously investigate the expression pattern of thousands of genes, the toxicogenomics experimenters can interpret the genome-scale interaction between genes exposed in toxicant or toxicant-related environment. The ultimate and primary goal of toxicogenomics identifies functional context among the group of genes that are differentially or similarly coexpressed under the specific toxic substance. On the other side, public reference databases with transcriptom, proteom, and biological pathway information are needed for the analysis of these complex omics data. However, due to the heterogeneous and independent nature of these databases, it is hard to individually analyze a large omics annotations and their pathway information. Fortunately, several web sites of the public database provide information linked to other. Nevertheless it involves not only approriate information but also unnecessary information to users. Therefore, the systematically integrated database that is suitable to a demand of experimenters is needed. For these reasons, we propose SOP (Search of Omics Pathway) database system which is constructed as the integrated biological database converting heterogeneous feature of public databases into combined feature. In addition, SOP offers user-friendly web interfaces which enable users to submit gene queries for biological interpretation of gene lists derived from omics experiments. Outputs of SOP web interface are supported as the omics annotation table and the visualized pathway maps of KEGG PATHWAY database. We believe that SOP will appear as a helpful tool to perform biological interpretation of genes or proteins traced to omics experiments, lead to new discoveries from their pathway analysis, and design new hypothesis for a next toxicogenomics experiments.

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2000.11a
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• pp.53-55
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• 2000

Xenie is the JAVA application software that integrates and represents 'gene to function'information of human gene. Xenie extracts data from several heterogeneous molecular biology databases and provides integrated information in human readable and machine usable way. We defined 7 semantic frame classes (Gene, Transcript, Polypeptide, Protein_complex, Isotype, Functional_object, and Cell) as a common schema for storing and integrating gene to function information and relationship. Each of 7 semantic frame classes has data fields that are supposed to store biological data like gene symbol, disease information, cofactors, and inhibitors, etc. By using these semantic classes, Xenie can show how many transcripts and polypeptide has been known and what the function of gene products is in General. In detail, Xenie provides functional information of given human gene in the fields of semantic objects that are storing integrated data from several databases (Brenda, GDB, Genecards, HGMD, HUGO, LocusLink, OMIM, PIR, and SWISS-PROT). Although Xenie provide fully readable form of XML document for human researchers, the main goal of Xenie system is providing integrated data for other bioinformatic application softwares. Technically, Xenie provides two kinds of output format. One is JAVA persistent object, the other is XML document, both of them have been known as the most favorite solution for data exchange. Additionally, UML designs of Xenie and DTD for 7 semantic frame classes are available for easy data binding to other bioinformatic application systems. Hopefully, Xenie's output can provide more detailed and integrated information in several bioinformatic systems like Gene chip, 2D gel, biopathway related systems. Furthermore, through data integration, Xenie can also make a way for other bioiformatic systems to ask 'function based query'that was originally impossible to be answered because of separatly stored data in heterogeneous databases.

• International Journal of Internet, Broadcasting and Communication
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• v.9 no.2
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• pp.11-19
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• 2017

The growing use of XML markup language has made amount of heterogeneous. XML documents are widely available in the Web. As the number of applications that utilize heterogeneous XML documents grow, the importance of XML document extraction increases greatly. In this paper, we propose a XML schema conversion technique that converts reusable XML schema from XML documents. We convert the schema graph and we use the reusability pattern list. The converted XML schema is evaluated in terms of cohesion, coupling, and reusability. The converted XML schema could be used to construct databases for various fields where XML is used as an intermediation of data exchange.

• The Journal of Society for e-Business Studies
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• v.3 no.1
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• pp.23-41
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• 1998

In a centralized database system, all system components reside at a single platform. In recent years there has been a rapid trend toward the integration of information systems over multiple sites that are interconnected via a communication network, and users' needs are changed to integration of multiple information sites. Multi database System is one of solutions for integrating distributed heterogeneous databases. However the problems in multi database system are restriction in distributed environment support, limitation in integrating heterogeneous media type data, static integration, and data-only of integration. In order to solve these problems, we propose a hybrid database integration model, HyDIM. HyDIM is used for the integrating legacy multimedia data, adopting CORBA, MDS, and mediator. We demonstrate a prototype system far PDM application domain.

• The Transactions of the Korea Information Processing Society
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• v.6 no.10
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• pp.2670-2679
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• 1999

XML documents which are used for exchanging structured documents between heterogeneous distributed system are increasing recently. It needs an object-oriented visualization tool for XML documents. So, we propose rules and an algorithm to represent structure of XML documents using UML Class Diagram. It helps to generate XML documents which are included links by understanding easily constructs of them and reduce gap of schema for them between heterogeneous databases. We propose formal models and modeling functions of XML links which provide an efficient environment for processing object-oriented documents.