• Title/Summary/Keyword: gyrA

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THE EVOLUTION OF A SPIRAL GALAXY: THE GALAXY

  • Lee, See-Woo;Park, Byeong-Gon;Kang, Yong-Hee;Ann, Hong-Bae
    • Journal of The Korean Astronomical Society
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    • v.24 no.1
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    • pp.25-53
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    • 1991
  • The evolution of the Galaxy is examined by the halo-disk model, using the time-dependent bimodal IMF and contraints such as cumulative metallicity distribution, differential metallicity distribution and PDMF of main sequence stars. The time scale of the Galactic halo formation is about 3Gyr during which the most of halo stars and metal abundance are formed and ${\sim}95%$ of the initial halo mass falls to the disk. The G-dwarf problem could be explained by the time-dependent bimodal IMF which is suppressed for low mass stars at the early phase (t < 1Gyr) of the disk evolution. However, the importance of this problem is much weakened by the Pagel's differential metallicity distribution which leads to less initial metal enrichment and many long-lived metal-poor stars with Z < $1/3Z_{\odot}$ The observational distribution of abundance ratios of C, N, O elements with respect to [Fe/H] could be reproduced by the halo-disk model, including the contribution of iron product by SNIs of intermediate mass stars. The initial enrichment of elements in the disk could be explained by the halo-disk model, resulting in the slight decrease and then the increase in the slopes of the [N/Fe]- and [C/Fe]-distributions with increasing [Fe/H] in the range of [Fe/H] < -1.

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Comparative Analysis of Levofloxacin Resistant Genes in Clinically Isolated Streptococcus pneumoniae (임상에서 분리한 Streptococcus pneumoniae에서 Levofloxacin 내성유전자의 비교 연구)

  • Choi, Jae Min;Park, Seon Hui;Yoon, Ji A;Han, Yang Keum;Lee, In Soo
    • Journal of dental hygiene science
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    • v.12 no.2
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    • pp.109-113
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    • 2012
  • One hundred seventy four Streptococcus pneumoniae clinical isolates were categorized depending on the types of specimens, the age and the gender, respectively. All isolates were analyzed the characteristics of the multi-drug resistance including levofloxacin antibiotics. In the results of analysis depending on the type of samples, it had been confirmed that sputum was the main source of pneumonia infection because 156 of 174 strains (89.7%) were isolated in sputum samples. The opportunity for isolating the S. pneumoniae that had tolerance to levofloxacin was increased in over 51 age patients group compared with other age and male group. Eight strains of isolates were evaluated higher resistant to levofloxacin, and those also showed multi-drug resistant including penicillin, tetracycline, erythromycin, clindamycin and trimethoprim-sulfamethoxazole. In the results of sequence analysis of quinolone resistance determining region in SP32 (MIC $64{\mu}g/mL$) and SP96 (MIC $8{\mu}g/mL$) which were levofloxacin resistant strains, an amino acid substitutions were found Ser-81$\rightarrow$Phe in both GyrA of SP32 and SP96, and Ser-11$\rightarrow$Gly in only SP96. A Ser-79$\rightarrow$Phe substitution of ParC was found in both.

WASHINGTON CCD PHOTOMETRY OF THE OPEN CLUSTER NGC 1245

  • WEE SUN-OK;LEE MYUNG GYOON
    • Journal of The Korean Astronomical Society
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    • v.29 no.spc1
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    • pp.145-146
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    • 1996
  • We have estimated a metal abundance of [Fe/H]= -0.04 $\pm$ 0.05 dex, a reddening of E(B- V)= 0.28 mag, an age of 1.1 $\pm$ 0.1 Gyr, and a distance of 2.5 $\pm$ 0.2 kpc for NGC 1245 using the Washington filter system.

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WASHINGTON CCD PHOTOMETRY OF THE OLD OPEN CLUSTER TOMBAUGH 2

  • WEE SUN-OK;LEE MYUNG GYOON;GEISLER DOUG
    • Journal of The Korean Astronomical Society
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    • v.29 no.spc1
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    • pp.147-148
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    • 1996
  • We have estimated a metal abundance of [Fe/H]= -0.48 $\pm$ 0.14 dex, a reddening of E(B- V)= 0.30 mag, an age of 2.0 $\pm$ 0.4 Gyr, and a distance of 7.9 $\pm$ 0.8 kpc for Tombaugh 2 using the Washington filter system.

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Comparative Superiority of in vitro Activity of DW-224a Supported by the Downward MIC Distribution in Ciprofloxacin-resistant Staphylococcus aureus (시프로플록사신 내성 황색 포도상 구균에서 MIC의 하향 분포로 입증된 DW-224a의 in vitro 항균 활성의 비교 우수성)

  • Yoon, Eun-Jeong;Lee, Chun-Yeong;Lee, Jong-Seo;Choe, Eung-Chil;Shim, Mi-Ja
    • Journal of Pharmaceutical Investigation
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    • v.39 no.6
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    • pp.431-435
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    • 2009
  • The comparative superior in vitro activity of DW-224a was supported by the downward MIC distribution due to the weakened influence of alterations within target enzymes in ciprofloxacin-resistant Staphylococcus aureus. The MI$C_{50}$ for DW-224a was 4 $\mu$g/mL, similar to that of gemifloxacin, 8-fold less than that of sparfloxacin and 16-over-fold less than that of ciprofloxacin. We constructed combinations of amino acid changes, located at codon 80, 83 or 84 within GrlA and 84, 85 or 88 within GyrA, which were associated with MIC increase. The amino acid changes were less influential to the MIC of DW-224a compared to those of other fluoroquinolones, and it was verified from the requirement of a total of two GrlA- and two GyrA-alterations to reach the MIC of DW-224a over 32 $\mu$g/mL.

Selection of Stable Reference Genes for Real-Time Quantitative PCR Analysis in Edwardsiella tarda

  • Sun, Zhongyang;Deng, Jia;Wu, Haizhen;Wang, Qiyao;Zhang, Yuanxing
    • Journal of Microbiology and Biotechnology
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    • v.27 no.1
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    • pp.112-121
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    • 2017
  • Edwardsiella tarda is a gram-negative pathogenic bacterium in aquaculture that can cause hemorrhagic septicemia in fish. Many secreted proteins have already been identified as virulent factors of E. tarda. Moreover, since virulent phenotypes are based on the expression regulation of virulent genes, understanding the expression profile of virulent genes is important. A quantitative RT-PCR is one of the preferred methods for determining different gene expressions. However, this requires the selection of a stable reference gene in E. tarda, which has not yet been systematically studied. Accordingly, this study evaluated nine candidate reference genes (recA, uup, rpoB, rho, topA, gyrA, groEL, rpoD, and 16S rRNA) using the Excel-based programs BestKeeper, GeNorm, and NormFinder under different culture conditions. The results showed that 16S rRNA was more stable than the other genes at different culture growth phases. However, at the same culture time, topA was identified as the reference gene under the conditions of different strains, different culture media, and infection, whereas gyrA was identified under the condition of different temperatures. Thus, in experiments, the expression of gapA and fbaA in E. tarda was analyzed by RT-qPCR using 16S rRNA, recA, and uup as the reference genes. The results showed that 16S rRNA was the most suitable reference gene in this analysis, and that using unsuitable reference genes resulted in inaccurate results.

Species Profiles and Antimicrobial Resistance of Non-aureus Staphylococci Isolated from Healthy Broilers, Farm Environments, and Farm Workers

  • Ji Heon Park;Gi Yong Lee;Ji Hyun Lim;Geun-Bae Kim;Kun Taek Park;Soo-Jin Yang
    • Food Science of Animal Resources
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    • v.43 no.5
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    • pp.792-804
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    • 2023
  • Non-aureus staphylococci (NAS), particularly antimicrobial-resistant NAS, have a substantial impact on human and animal health. In the current study, we investigated (1) the species profiles of NAS isolates collected from healthy broilers, farm environments, and farm workers in Korea, (2) the occurrence of antimicrobial-resistant NAS isolates, especially methicillin resistance, and (3) the genetic factors involved in the methicillin and fluoroquinolone resistance. In total, 216 NAS isolates of 16 different species were collected from healthy broilers (n=178), broiler farm environments (n=18), and farm workers (n=20) of 20 different broiler farms. The two most dominant broiler-associated NAS species were Staphylococcus agnetis (23.6%) and Staphylococcus xylosus (22.9%). Six NAS isolates were mecA-positive carrying staphylococcal cassette chromosome mec (SCCmec) II (n=1), SCCmec IV (n=1), SCCmec V (n=2), or nontypeable SCCmec element (n=2). While two mecA-positive Staphylococcus epidermidis isolates from farm workers had SCCmec II and IV, a mecA-positive S. epidermidis isolate from broiler and a Staphylococcus haemolyticus isolate farm environment carried SCCmec V. The occurrence of multidrug resistance was observed in 48.1% (104/216 isolates) of NAS isolates with high resistance rates to β-lactams (>40%) and fusidic acid (59.7%). Fluoroquinolone resistance was confirmed in 59 NAS isolates (27.3%), and diverse mutations in the quinolone resistance determining regions of gyrA, gyrB, parC, and parE were identified. These findings suggest that NAS in broiler farms may have a potential role in the acquisition, amplification, and transmission of antimicrobial resistance.

THE EVOLUTION OF THE SOLAR NEIGHBORHOOD I: CORRELATIONS OF AGE WITH METALLICITY AND KINEMATIC PARAMETERS

  • Lee, See-Woo
    • Journal of The Korean Astronomical Society
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    • v.15 no.1
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    • pp.19-36
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    • 1982
  • For ${\sim}240$ nearby stars their age and mass were determined and kinematic parameters determined for 362 stars, applying Woolley's three-dimensional potential. Metallicity and kinematic parameters of these stars were correlated with their age, suggesting the slow collapse ($t{\gtrsim}a$ few billion years) of the Galaxy and the initial rapid enrichment in metal abundance (${\Delta}Z{\approx}1/3Z_1$(present) for ${\sim}4{\times}10^8$ yrs). The late slow enrichment rate is given by $d(Z/Z_{\odot})/dt=5.9{\sim}7.0{\pm}3.4$ per Gyr.

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Survey of Oxolinic Acid-Resistant Erwinia amylovora in Korean Apple and Pear Orchards, and the Fitness Impact of Constructed Mutants

  • Ham, Hyeonheui;Oh, Ga-Ram;Park, Dong Suk;Lee, Yong Hoon
    • The Plant Pathology Journal
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    • v.38 no.5
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    • pp.482-489
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    • 2022
  • Fire blight caused by Erwinia amylovora (Ea) is a devastating disease in apple and pear trees. Oxolinic acid (OA), a quinolone family antibiotic that inhibits DNA gyrase, has been employed to control fire blight in South Korea since 2015. The continuous use of this bactericide has resulted in the emergence of OA-resistant strains in bacterial pathogens in other countries. To investigate the occurrence of OA-resistant Ea strains in South Korea, we collected a total of 516 Ea isolates from diseased apple and pear trees in 2020-2021 and assessed their sensitivities to OA. We found that all isolates were susceptible to OA. To explore the possibility of emerging OA-resistant Ea by continuous application of OA, we exposed Ea stains to a range of OA concentrations and constructed OA-resistant mutant strains. Resistance was associated with mutations in the GyrA at codons 81 and 83, which result in glycine to cysteine and serine to arginine amino acid substitutions, respectively. The in vitro growth of the mutants in nutrient media and their virulence in immature apple fruits were lower than those of wild-type. Our results suggest that OA-resistance decreases the fitness of Ea. Future work should clarify the mechanisms by which OA-resistance decreases virulence of this plant pathogen. Continuous monitoring of OA-resistance in Ea is required to maintain the efficacy of this potent bactericide.

Increased Resistance to Quinolones in Streptococcus parauberis and Development of a Rapid Assay for Detecting Mutations in Topoisomerase Genes (Streptococcus parauberis의 퀴놀론 내성 증가와 Topoisomerase 유전자에서의 돌연변이 신속 분석)

  • Kim, So Yeon;Kim, Young Chul;Jeong, Seo Kyung;Jun, Lyu Jin;Jin, Ji Woong;Jeong, Hyun Do
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.3
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    • pp.247-254
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    • 2014
  • To investigate the acquisition of quinolone resistance, we examined mutations in the quinolone resistance-determining region (QRDR) of type II topoisomerase genes in ciprofloxacin (CIP)-resistant clinical isolates and in vitro mutants of Streptococcus parauberis. The CIP-resistant clinical isolates had one base change responsible for a Ser-79${\rightarrow}$Thr in the QRDR of parC. However, the CIP-resistant in vitro mutants had an altered QRDR of parC (Ser-79${\rightarrow}$Ile) that differed from that of the isolates. None of the CIP-resistant S. parauberis clinical isolates or in vitro mutants exhibited amino acid changes in gyrA or gyrB. However, even though involvement in the increased resistance was not clear, an Arg-449${\rightarrow}$Ser mutation outside of the QRDR of parE was detected in CIP-resistant mutant 2P1. These results suggest that the topoisomerase IV gene, parC (and possibly parE, as well), is the primary ciprofloxacin target in S. parauberis. Additionally we established a high-resolution melting (HRM) assay capable of detecting the dominant mutation in four type II topoisomerase genes conferring ciprofloxacin resistance. These rapid and reliable assays may provide a convenient method of surveillance for genetic mutations conferring antibiotic resistance.