• 농업과학연구
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• 제47권3호
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• pp.693-705
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• 2020

Grapes (Vitis spp. L.) are the third most produced fruit in the world. Crown gall disease caused by Agrobacterium vitis forms galls in the stems of the grapevines and reduces the vitality of the fruit trees, resulting in reduced yields. This pathogen has occurred in vineyards worldwide and caused serious economic losses. It is a soil-borne disease, so Agrobacterium vitis can survive for several years in vineyards and is difficult to control. Additionally, since there is no effective chemical control method, the most effective control method is the breeding of resistant varieties. To make the resistant variety, marker-assisted selection (MAS) enables fast breeding with low cost. In this study, we applied a genome-wide association study (GWAS), by combining phenotyping and genotyping-by-sequencing (GBS), for the development of a single nucleotide polymorphism (SNP) marker set related to crown gall disease using 350 grapevine varieties. As a result of the GBS based genotyping analysis, about 58,635 SNPs were obtained. In addition, the phenotypic analysis showed 35.2% resistance, 73% moderate susceptibility and 16.4% highly susceptibility. Moreover, after confirmation, two genes (VvARF4 and VvATL6-like) were shown to be related to crown gall disease based on the results of GWAS analysis, using the phenotypic data, and GBS. High-resolution melting analysis (HRMA) was performed using the Luna^® Universal Probe with real-time PCR to distinguish the melting peaks of the resistant and susceptible varieties. Our data show that these SNP markers are expected to be helpful in evaluating resistance against grapevine crown gall disease and in breeding.

• 한국식물병리학회:학술대회논문집
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• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
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• pp.120.2-120
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• 2003

Agrobacterium vitis is a causal agent of crown-gall disease on grapevine. In Korea, grapevine variety (GeoBong) have severely been infected by the bacteria since stems of the variety were buried in soil for overwintering. Infection ratio over 70-80％ was observed on 7 years old GeoBong grapevine in Ansung and Cheonan. PCR specific primers for A. vitis strains were designed using nucleotide sequences of vir A gene in Ti-Plasmid, pheA gene in chromosomal DNA and a URP-PCR polymorphic band. Three hundred bacterial strains were isolated from the different 80 galls formed on GeoBong grapevine in Cheonan and Ansung of Korea and were screened to identify A. vitis using the three specific PCR primers for Agrobacterium vitis. Twenty-four bacterial strains that are detected by the primers were further confirmed by pathogenicity and biochemical methods. To investigate the genomic diversity of the bacterial strains, twenty primers of 20 mer referred to universal rice primers (URP) were applied for PCR fingerprinting, Of them, URP2R and URP2F primers could effectively be used to detect polymorphism within the bacterial strains.

• 식물병연구
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• 제12권3호
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• pp.189-196
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• 2006

2003년 대전광역시 유성구에서 벤자민고무나무의 줄기에 뿌리혹병이 발생하였다. 혹은 15cm정도의 크기로 표면이 거칠고 갈변된 타원형이었다. 혹 조직으로부터 Agrobacterium과 유사한 세균을 분리하였으며 벤자민고무나무의 유묘에 접종하여 혹을 형성한 5개 균주 중에서 2가지 계통에 대하여 분류학적 특성을 조사하였다. 0.5% $CaCO_3$가 첨가된 PDA 배지에서 생장된 병원성 세균들은 둥글고 볼록하면서 광택이 나는 크림색 계통이었다. 모든 균주는 다수의 편모를 가진 간상의 세균으로 그람음성이었으며 호기적으로 생장하면서 D1M agar에서도 생장하였다. 병원성 세균들은 대조균주와 상이한 특성을 가지고 있었으나 주요 생리 생화학적특성, 탄소원 이용양상, 지방산조성 분석 결과에 근거하여 A. larrymoorei와 A. tumefacien로 동정되었다. A. larrymoorei와 A. tumefaciens는 포도를 제외한 타 기주식물에서도 병원성이 있었다. 국내에서 A. larrymoorei와 A. tumefaciens에 의한 벤자민고무나무의 뿌리혹병은 본 연구에서 처음 보고된다.

• Journal of Plant Biotechnology
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• 제43권1호
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• pp.37-48
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• 2016

The transcriptional profiles of 'Tamnara' grapevine (Vitis labruscana L.) to Rhizobium vitis were determined using 12,000 gene oligonucleotide microarray chips constructed with 6,776 unigenes based on the EST sequencing. Among them, 95 clones were up-regulated more than three times and 90 were down-regulated more than 5-times in the R. vitis-inoculated grapevines relative to the control vines. Treatment of salicylic acid showed that 337 clones were upregulated and 52 clones were down regulated in grapevines. Microarray analysis, reverse transcription-polymer chain reaction, and slot blot hybridization analysis revealed that 5, 14, and 64 clones were up-regulated and 10, 12, and 61 clones were down-regulated in wounded, salicylic acid-treated, and R. vitis-inoculated 'Tamnara' grapevine leaves, respectively. The expression patterns of ${\beta}$-1,3-glucanase, proline-rich protein, and lipoxygenase genes of 'Tamnara' moderately resistant to R. vitis were similar to those of resistant 'Concord' and 'Delaware' grapevines. However, chalcone synthase genes in 'Tamnara' grapevines showed similar expression patterns to susceptible grapevines 'Neomuscat' and 'Rizamat'. Further expression studies with various clones for each gene should be conducted to elucidate their roles in resistant responses against pathogens or other stimuli in grapevines. These results could provide better resources for understanding the mechanism of defense responses against crown gall disease and clues for identifying new genes that may play a role in defense against R. vitis in grapevines.

• 원예과학기술지
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• 제34권4호
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• pp.537-548
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• 2016

항암, 항산화, 항균 활성을 나타내는 9종의 약용식물을 이용하여 포도나무 줄기혹병의 억제효과를 조사하였다. 공시한 식물 중에서 개똥쑥(15mm), 맨드라미의 꽃(27mm)과 잎(13mm), 여주의 미성숙 열매(22mm), 상사화 꽃(7mm), 질경이의 꽃(14mm)과 종자(16mm), 초석잠의 뿌리(13mm), 복숭아 나무의 수지(10mm) 추출물 등이 줄기혹병균(Rhizobium vitis)에 대해 항균활성을 나타내었다. 항균활성의 분획물의 최소억제농도를 확인한 결과 개똥쑥, 맨드라미 잎, 여주 미성숙과 분획물은 각각 50,000배, 질경이 꽃 분획물은 10,000배 희석액이 최소억제농도(MIC)로 확인되었다. 개똥쑥, 맨드라미 꽃과 잎, 여주의 미성숙 열매 추출물의 항균활성물질을 column chromatography와 thin layer chromatography(TLC)를 통하여 분획하였다. 핵산/에틸아세테이트와 메탄올/클로로포름(20:80, v/v)으로 전개한 TLC 분석에서 개똥쑥 추출물에서는 Rf 0.36, 0.69, 0.75, 0.84, 0.94, 맨드라미 꽃 추출물은 Rf 0.96, 0.99, 맨드라미 잎 추출물은 Rf 0.92, 0.97, 여주의 미성숙열매 추출물은 Rf 0.85에서 항균 활성의 분획을 획득하였다. 개똥쑥, 맨드라미 잎, 여주 미성숙 열매 추출물을 물에 희석(500, 1,000, 2,000배)하고 온실에서 R.vitis를 접종한 '거봉' 식물체에 7일 간격으로 관수한 결과, 개똥쑥 희석액은 100%, 맨드라미 잎 추출물(500배 희석액)은 67%, 여주 미성숙 열매 추출물(500배 희석액)은 83.3%의 억제효과를 나타내었다. 이러한 연구 결과는 약용식물 추출물이 포도나무 줄기혹병을 방제할 수 있는 친환경 제제로서의 적용가능성을 제시한 것이라 할 수 있다.