• Journal of the Institute of Convergence Signal Processing
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• v.9 no.2
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• pp.129-134
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• 2008

In this paper, we carry out the simulation for an optimal solution of one-dimensional nonlinear photonic crystal structure using Genetic algorithm, and show the proposed method to apply for photonic transistors. Unlike a conventional steepest descent method for an optimization, the proposed method based on Genetic Algorithm has advantages for finding out excellent solutions without any analytic forms, which can easily apply to other applications. Also, as several solutions around global minimum solution can be obtained, it is very good optimization tool to give us the patterns about the optimal structure of a photonic crystal transistor. To design an all-optical filter transistor, Neural network algorithm is firstly performed for an initial design and then Genetic Algorithm is finally used to get the optimal solution. From the simulation of one-dimensional photonic crystal transistor, 27dB of the switching On/Off ratio is obtained.

• Journal of Korean Society of Steel Construction
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• v.19 no.2
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• pp.171-179
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• 2007

The greenhouse discrete optimum design program was developed using discrete optimum algorithm based on the genetic algorithm. The basic search method for the optimum design is the genetic algorithm, which is known to be very efficient for discrete optimization. In this paper, the objective function was the weight of the greenhouse structures and the constraints were the limits state design method. The design variables were galvanized steel pipes for plastic housing KSD 3760. Objective criteria were presented for the design of economic greenhouse structure and evaluation of its stability. The standardizations of greenhouse structure were used, as well as the normalization of greenhouse-related materials. Design examples were given to show the applicability of the optimum design using the discrete optimum algorithm based on the genetic algorithm of this study.

• Animal Bioscience
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• v.35 no.12
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• pp.1839-1849
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• 2022

Objective: The study aims to uncover the genetic diversity and unique genetic structure of the Min pig conserved population, divide the nucleus conservation population, and construct the molecular pedigree. Methods: We used KPS Porcine Breeding Chip v1 50K for SNP detection of 94 samples (31♂, 63♀) in the Min pig conserved population from Lanxi breeding Farm. Results: The polymorphic marker ratio (PN), the observed heterozygosity (Ho), and the expected heterozygosity (He) were 0.663, 0.335, and 0.330, respectively. The pedigree-based inbreeding coefficients (F_PED) was significantly different from those estimated from runs of homozygosity (F_ROH) and single nucleotide polymorphism (F_SNP) based on genome. The Pearson correlation coefficient between F_ROH and F_SNP was significant (p<0.05). The effective population content (Ne) showed a continuously decreasing trend. The rate of decline was the slowest from 200 to 50 generations ago (r = 0.95), then accelerated slightly from 50 to 5 generations ago (1.40

• Plant Breeding and Biotechnology
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• v.7 no.3
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• pp.186-199
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• 2019

We selected 68 Chinese maize inbred lines to understand the genetic diversity, population structure, and marker-trait associations for eight agronomic traits and 50 simple sequence repeats (SSRs) markers. In this study, effective traits, such as days of anthesis (DA), days of silking (DS), ear height (EH), plant to ear height ratio (ER), plant height (PH), and leaf width (LW) were divided into PC1 and PC2 by PCA analysis for maize inbred lines. Genetic diversity analysis revealed a total of 506 alleles at 50 SSR loci. The mean number of alleles per locus was 10.12. The averages of genetic diversity (GD) and polymorphic information content (PIC) values were 0.771 and 0.743, respectively. Based on a membership probability threshold of 0.80, the population structure revealed that the total inbred lines were divided into three major groups with one admixed group. A marker-trait association using Q + K MLM showed that nine SSR markers (bnlg1017, umc2041, umc2400, bnlg105, umc1229, umc1250, umc1066, umc2092, and umc1426) were related with seven agronomic traits. Among these SSR markers, eight SSR markers were associated with only one agronomic trait (DA, DS, ER, LL, LW, PH, and ST), whereas one SSR marker (umc1229) was associated with two agronomic traits (DA and ST). These results will help in optimizing the choice of inbred lines for cross combinations, as well as in selecting markers for further maize breeding programs.

• Proceedings of the Korean Society of Crop Science Conference
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• 2022.10a
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• pp.212-212
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• 2022

Soluble starch synthase (SS) IV-2 is one of the starch synthase gene family members and responsible for starch chain elongation interacting with other rice eating and cooking quality controlling genes (e.g., AGPlar and PUL). SSIV-2 is mainly expressed in leaves, especially at grain-filling stage and its alleles can significantly affect rice quality. Here, we investigated the genetic diversity and population structure analyses of SSIV-2 gene by using 374 rice accessions. This rice set was grouped into 320 cultivated bred (subsequently classified into temperate japonica, indica, tropical japonica, aus, aromatic and admixture) and 54 wild rice. Haplotyping of cultivated rice accessions provided a total of 7 haplotypes, and only three haplotypes are functional indicating four substituted SNPs in two exons of chromosome 5: T/A and G/T in exon 4, and C/G and G/A in exon 13. Including the wild, a highest diverse group (0.0041), nucleotide diversity analysis showed temperate japonica (0.0001) had a lowest diversity value indicating the origin information of this gene evolution. Higher and positive Tajima5s D value of indica (1.9755) indicate a selective signature under balancing selection while temperate japonica (-0.9018) was in lowest Tajima's D value due to a recent selective sweep by positive selection. We found the most diverse genetic components of the wild in PCA but shared in some portion with other cultivated groups. Fixation index (F_ST-values) and phylogenetic analysis indicate a closer relationship of the wild with indica (F_ST=0.256) than to its association to both of temperate japonica (F_ST=0.589). Structure analysis shows a clear separation of cultivated subpopulations at every K value, but genetic components were admixed within the wild illustrating the same genetic background with japonica and indica in some proportion.

• Journal of Korean Society of Forest Science
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• v.103 no.1
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• pp.51-58
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• 2014

Genetic diversity and genetic structures were estimated in seven natural populations of Phellodendron amurense Rupr in South Korea using ISSR markers. The average of polymorphic loci per primer and the proportion of polymorphic loci per population were 4.5 and 78.8% respectively with total 27 polymorphic loci from 6 ISSR primers. The Shannon's diversity index(I) was 0.421 and the expected heterozygosity($H_e$) was 0.285, which was similar to the heterozygosity (hs =0.287) inferred by Bayesian method. In AMOVA, 7.6% of total genetic variation in the populations was resulted from the genetic difference among populations and the other 92.4% was resulted from the difference among individuals within populations. Genetic differentiation(${\theta}^{II}$) and inbreeding coefficient(f) for total population were estimated to be 0.066 and 0.479 by Bayesian method respectively. In Bayesian clustering analysis, seven populations were assigned into three groups. This result was similar to the results of genetic relationships by UPGMA and PCA. The first group included Hwachoen, Gapyeong, Bongpyeong and Yongpyeong population, and the second included two populations in Sancheong region. Muju population was discretely assigned into the third group in spite of the geographically short distance from the Sancheong region. There was no significant correlation between genetic relationship and geographic distribution among populations in Mantel's test. For conservation of the phellodendron trees, it would be effective to consider the findings resulted from this study with ecological traits and life histories of this species.

• Transactions of the Korean Society of Mechanical Engineers A
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• v.29 no.2 s.233
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• pp.262-269
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• 2005

Optimization of a satellite structure under severe space launching environments is performed considering various design constraints. Simulate annealing, one of combinatorial optimization techniques, is used to optimize the satellite. The optimization results by the simulated annealing are compared to those by the method of modified feasible direction and genetic algorithm. Ten bar truss structure is optimized for feasibility study of the simulated annealing. Finally, the satellite structure is optimized by the simulated annealing algorithm under space environment. Weights of the satellite upper platform and propulsion module are minimized with consideration of several static and dynamic constraints. MSC/NASTRAN is used to find the static and dynamic responses. Simulated annealing has been programmed and integrated with the finite element analysis program for optimization. It is shown that the simulated annealing algorithm can be extended to the optimization of space structures.

• Journal of electromagnetic engineering and science
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• v.3 no.1
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• pp.17-21
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• 2003

In this paper, we design an optimal planar array geometry for maximum side-lobe reduction. The concept of thinned array is applied to obtain an optimal two dimensional(2-D) planar array structure. First, a 2-D rectangular array with uniform spacing is used as an initial planar array structure. Next, we modify the initial planar array geometry with the aid of thinned array theory in order to reduce the maximum side-lobe level. This is implemented by a genetic algorithm under some constraint, minimizing the maximum side-lobe level of the 2-D planar array. It is shown that the optimized planar array structure can achieve low side-lobe level without optimizing the excitations of the array antennas.

• Proceedings of the Korean Society of Precision Engineering Conference
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• 2004.10a
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• pp.902-907
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• 2004

In this paper, a multi-step optimization using a G.A. (Genetic Algorithm) with variable penalty function is introduced to the structural design optimization of a 5-head route machine. Our design procedure consist of two design optimization stage. The first stage of the design optimization is static design optimization. The following stage is dynamic design optimization stage. In the static optimization stage, the static compliance and weight of the structure are minimized simultaneously under some dimensional constraints and deflection limits. On the other hand, the dynamic compliance and the weight of the machine structure are minimized simultaneously in the dynamic design optimization stage. As the results, dynamic compliance of the 5-head router machine was decreased by about 37％ and the weight of the structure was decreased by 4.48％ respectively compared with the simplified structure model.

• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2001.12a
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• pp.221-224
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• 2001

In this paper, we propose the initial optimized structure of the Radial Basis Function Network which is more simple in the part on the structure and converges more faster than Neural Network with the analysis method using Time-Frequency Localization and genetic algorithm. When we construct the hidden node with the Radial Basis Function whose localization is similar with an approximation target function in the plane of the Time and Frequency, we have initial structure of RBFN, After that, we evaluate the parameters of RBF in the network and the parameters needed for the network is more a few. Finally, we make a good decision of the initial structure having an ability of approximation.