• Molecules and Cells
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• v.26 no.4
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• pp.350-355
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• 2008

Chk2 is a well characterized protein kinase with key roles in the DNA damage response. Chk2 is activated by phosphorylation following DNA damage, and relays that signal to various substrate proteins to induce cell cycle arrest, DNA repair, and apoptosis. In order to identify novel components of the Chk2 signaling pathway in Drosophila, we screened 2,240 EP misexpression lines for dominant modifiers of an adult rough eye phenotype caused by Chk2 overexpression in postmitotic cells of the eye imaginal disc. The rough eye phenotype was suppressed by mutation of the ATM kinase, a well-described activator of Chk2. Twenty-five EP modifiers were identified (three enhancers and 22 suppressors), none of which correspond to previously known components of Chk2 signaling. Three EPs caused defects in G2 arrest after irradiation with incomplete penetrance when homozygous, and are likely directly involved in the response to DNA damage. Possible roles for these modifiers in the DNA damage response and Chk2 signaling are discussed.

• Journal of the Computational Structural Engineering Institute of Korea
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• v.19 no.3 s.73
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• pp.313-322
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• 2006

In the genetic algoricm (GA) based damage detection methods using vibration of structures, the selection of modal properties is important to improve the accuracy of damage detection. The objective of this study is to improve the accuracy of damage detection using natural frequency and modal strain energy, The following approaches are used to achieve the goal. First, modal strain energy is formulated and a new GA-based damage detection technique using natural frequency and modal strain energy is proposed. Next, to verify the efficiency of proposed technique, damage scenarios for free-free beam are designed and vibration modal tests of the target structure are conducted. Finally, the feasibility of the proposed technique is verified in comparison with other GA-based damage detection technique using natural frequency and mode shape.

• Journal of Ocean Engineering and Technology
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• v.23 no.1
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• pp.122-128
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• 2009

In this study, damage detection method using harmony search method and frequency response is proposed. In order to verify this method, the following approaches are implemented. Firstly, damage detection method using harmony search was developed. To detect damage, objective functions that minimize difference with natural frequency and modal strain energy from undamaged and damaged model are used. Secondly, efficiency of developed damage detection method was verified by damage detection of beam structure. And results of harmony search and micro genetic algorithm are compared and evaluated. Thirdly, numerical model was implemented for harbor caisson structure and damage scenario was determined. Lastly, damage detection was performed by proposed method and utility of proposed method is verified.

• Asian Pacific Journal of Cancer Prevention
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• v.13 no.10
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• pp.4993-4998
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• 2012

Vanillic acid, a vegetable phenolic compound, is a strong antioxidant. The aim of the present study was to determine its effects on mitomycin C-induced DNA damage in human blood lymphocyte cultures in vitro, both alone and in combination with mitomycin C (MMC). The cytokinesis block micronucleus test and alkaline comet assay were used to determine genotoxic damage and anti-genotoxic effects of vanillic acid at the DNA and chromosome levels. MMC induced genotoxicity at a dose of $0.25{\mu}g/ml$. Vanillic acid ($1{\mu}g/ml$) significantly reduced both the rates of DNA damaged cells and the frequency of micronucleated cells. A high dose of vanillic acid ($2{\mu}g/ml$) itself had genotoxic effects on DNA. In addition, both test systems showed similar results when tested with the negative control, consisting of dimethyl sulfoxide (DMSO) in combination with vanillic acid ($1{\mu}g/ml$)+MMC. In conclusion, vanillic acid could prevent oxidative damage to DNA and chromosomes when used at an appropriately low dose.

• Smart Structures and Systems
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• v.16 no.1
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• pp.1-26
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• 2015

Minimizing construction cost and reducing seismic damage are two conflicting objectives in the design of any new structure. In the present work, we try to develop a framework in order to solve the optimum performance-based design problem considering the construction cost and the seismic damage of steel moment-frame structures. The Park-Ang damage index is selected as the seismic damage measure because it is one of the most realistic measures of structural damage. The non-dominated sorting genetic algorithm (NSGA-II) is employed as the optimization algorithm to search the Pareto optimal solutions. To improve the time efficiency of the proposed framework, three simplifying strategies are adopted: first, simplified nonlinear modeling investigating minimum level of structural modeling sophistication; second, fitness approximation decreasing the number of fitness function evaluations; third, wavelet decomposition of earthquake record decreasing the number of acceleration points involved in time-history loading. The constraints of the optimization problem are considered in accordance with Federal Emergency Management Agency's (FEMA) recommended seismic design specifications. The results from numerical application of the proposed framework demonstrate the efficiency of the framework in solving the present multi-objective optimization problem.

• International Journal of Oral Biology
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• v.47 no.2
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• pp.17-24
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• 2022

Preserving intact genetic material and delivering it to the next generation are the most significant tasks of living organisms. The integrity of DNA sequences is under constant threat from endogenous and exogenous factors. The accumulation of damaged or incompletely-repaired DNA can cause serious problems in cells, including cell death or cancer development. Various DNA damage detection systems and repair mechanisms have evolved at the cellular level. Although the mechanisms of these responses have been extensively studied, the global RNA expression profiles associated with genomic instability are not well-known. To detect global gene expression changes under different DNA damage and hypoxic conditions, we performed RNA-seq after treating human cervical cancer cells with ionizing radiation (IR), hydroxyurea, mitomycin C (MMC), or 1% O₂ (hypoxia). Results showed that the expression of 184-1037 genes was altered by each stimulus. We found that the expression of 51 genes changed under IR, MMC, and hypoxia. These findings revealed damage-specific genes that varied differently according to each stimulus and common genes that are universally altered in genetic instability.

• Journal of the Korean Association of Oral and Maxillofacial Surgeons
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• v.34 no.5
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• pp.509-517
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• 2008

DNA damage accumulates in cells as a result of exposure to exogenous agents such as benzopyrene, cigarette smoke, ultraviolet light, X-ray, and endogenous chemicals including reactive oxygen species produced from normal metabolic byproducts. DNA damage can also occur during aberrant DNA processing reactions such as DNA replication, recombination, and repair. The major of DNA damage affects the primary structure of the double helix; that is, the bases are chemically modified. These modification can disrupt the molecules'regular helical structure by introducing non-native chemical bonds or bulky adducts that do not fit in the standard double helix. DNA repair genes and proteins scan the global genome to detect and remove DNA damage and damage to single nucleotides. Direct reversal of DNA damage, base excision repair, double strand break. DNA repair are known relevant DNA repair mechanisms. Four different mechanisms are distinguished within excision repair: direct reversal, base excision repair, nucleotide excision repair, and mismatch repair. Genetic variation in DNA repair genes can modulate DNA repair capacity and alter cancer risk. The instability of a cell to properly regulate its proliferation in the presence of DNA damage increase risk of gene mutation and carcinogenesis. This article aimed to review mechanism of excision repair and to understand the relationship between genetic variation of excision repair genes and head and neck cancer.

• Journal of Korean Society of Forest Science
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• v.96 no.3
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• pp.295-299
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• 2007

Resistance to chestnut gall wasp (Dryocosmus kuriphilus) of Korean prevailing chestnut cultivars, new cultivars released by Korea Forest Research Institute (KFRI), and local cultivars by growers was investigated to select optimal cultivars suitable for main chestnut producing areas. During three years investigated from 2004 to 2006, we could find no damage by chestnut gall wasp in any cultivars of test sites located in Gongju and Chungju of the central area. However, most cultivars of Gwangyang, Sancheong and Hapcheon sites located in the southern area showed a lot of damage by chestnut gall wasp. Hapcheon was most severe in comparison with regional damage by chestnut gall wasp. From comparison among cultivars, Kwangeun, Sandae, Eunsan and Idae released by KFRI showed no damage suggesting the highest resistant cultivars. On the contrary, over 20% in total damage by chestnut gall wasp was investigated in Tanzawa, Riheiguri, Kurakata-amaguri, Pyeonggi, Gwangdeok, Seil, Sinipyeong and Yumabyuni suggesting susceptible cultivars. In damage by chestnut gall wasp according to investigated position within tree, weak shoot was more severe than bearing shoot. Damage by chestnut gall wasp of major cultivars in Gwangyang, Sancheong and Hapcheon sites was remarkably decreased in 2006, and it seems to be caused by biological control by natural enemies such as Torymus sinensis.

• Journal of Korean Society of Steel Construction
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• v.17 no.2 s.75
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• pp.173-181
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• 2005

This study deals with a method to identify damages of free vibrating thin plate structures using the combined finite element method (FEM) and the advanced uniform micro-genetic algorithm.To solve the inverse problem using the combined method, this study uses several natural frequencies instead of mode shapes in a structure as the measured data. The technique described in this paper allows us not only to detect the damaged elements but also to find their numbers, locations, and the extent of damage.To demonstrate the feasibility of the proposed method, the algorithm is applied to a free vibrating steel thin plate structures with arbitrary damages. From the standpoint of computation efficiency, the proposed method in this study has advantages when compared with the existing simple genetic algorithms. The numerical examples demonstrate that the method using micro-genetic algorithms can possibly detect correctly the damages of thin plates from only several natural frequencies instead of their natural modes.

• Journal of Nutrition and Health
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• v.34 no.4
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• pp.401-408
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• 2001

The spontaneous frequency of genetic damage and the possible relationship of this damage to total radical-trapping antioxidant potential(TRAP) and antioxidant vitamins, including plasma levels of $\alpha$-carotene, $\beta$-carotene, cryptoxanthin, retinol, $\alpha$-tocopherol and ${\gamma}$-tocopherol in humans were investigated in 57 subjects using two indices of genetic damage, SCE & HFC frequency. The mean of SCE and HFC frequencies were weakly correlated with plasma TRAP(r=-0.305, p<0.1 for SCEs: r=-0.297, p<0.1 for HFCs, respectively), but those were strongly negatively correlated with plasma $\beta$-carotence(r=-0.385, p<0.01 for SCEs : r=-0.392, p<0.01 for HFCs) and cryptoxanthin(r=-0.312, p<0.05 for SCEs : r=0.335, p<0.05 for HFCs, respectively) levels in the subjects. However, those DNA damage markers including SCE and HFC did not correlate with either plasma $\alpha$-carotene, $\alpha$-tocopherol or retinol concentrations. The mean of SCE and HFC frequencies were positively correlated with plasma ${\gamma}$-tocopherol level(r=0.421, p<0.01 for SCEs : r=0.399, p<0.01 for HFCs, respectively). These findings indicate that increased cytogenetic DNA changes, as determined by SCE and HFC frequencies are possibly associated with generation of free radicals in lymphocytes and decreased plasma antioxidant vitamin($\beta$-carotene and cryptoxanthin) status in the subjects. (Korean J Nutrition 34(4) : 401~08, 2001)