• Title/Summary/Keyword: genetic bottleneck

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An Efficient Evolutionary Algorithm for Optimal Arrangement of RFID Reader Antenna (RFID 리더기 안테나의 최적 배치를 위한 효율적인 진화 연산 알고리즘)

  • Soon, Nam-Soon;Yeo, Myung-Ho;Yoo, Jae-Soo
    • The Journal of the Korea Contents Association
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    • v.9 no.10
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    • pp.40-50
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    • 2009
  • Incorrect deployment of RFID readers occurs reader-to-reader interferences in many applications using RFID technologies. Reader-to-reader interference occurs when a reader transmits a signal that interferes with the operation of another reader, thus preventing the second reader from communicating with tags in its interrogation zone. Interference detected by one reader and caused by another reader is referred to as a reader collision. In RFID systems, the reader collision problem is considered to be the bottleneck for the system throughput and reading efficiency. In this paper, we propose a novel RFID reader anti-collision algorithm based on evolutionary algorithm(EA). First, we analyze characteristics of RFID antennas and build database. Also, we propose EA encoding algorithm, fitness algorithm and genetic operators to deploy antennas efficiently. To show superiority of our proposed algorithm, we simulated our proposed algorithm. In the result, our proposed algorithm obtains 95.45% coverage rate and 10.29% interference rate after about 100 generations.

Mitochondria in reproduction

  • Min-Hee Kang;Yu Jin Kim;Jae Ho Lee
    • Clinical and Experimental Reproductive Medicine
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    • v.50 no.1
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    • pp.1-11
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    • 2023
  • In reproduction, mitochondria produce bioenergy, help to synthesize biomolecules, and support the ovaries, oogenesis, and preimplantation embryos, thereby facilitating healthy live births. However, the regulatory mechanism of mitochondria in oocytes and embryos during oogenesis and embryo development has not been clearly elucidated. The functional activity of mitochondria is crucial for determining the quality of oocytes and embryos; therefore, the underlying mechanism must be better understood. In this review, we summarize the specific role of mitochondria in reproduction in oocytes and embryos. We also briefly discuss the recovery of mitochondrial function in gametes and zygotes. First, we introduce the general characteristics of mitochondria in cells, including their roles in adenosine triphosphate and reactive oxygen species production, calcium homeostasis, and programmed cell death. Second, we present the unique characteristics of mitochondria in female reproduction, covering the bottleneck theory, mitochondrial shape, and mitochondrial metabolic pathways during oogenesis and preimplantation embryo development. Mitochondrial dysfunction is associated with ovarian aging, a diminished ovarian reserve, a poor ovarian response, and several reproduction problems in gametes and zygotes, such as aneuploidy and genetic disorders. Finally, we briefly describe which factors are involved in mitochondrial dysfunction and how mitochondrial function can be recovered in reproduction. We hope to provide a new viewpoint regarding factors that can overcome mitochondrial dysfunction in the field of reproductive medicine.

Mitochondrial DNA Swquence Variation of the Firefly, Pyrocoelia rufa(Coleoptera: Lampyridae), in Korea (늦반딧불이 Pyrocoelis rufa(딱정벌레목: 반딧불이과)의 미토콘드리아 DNA 염기서열 변이)

  • 이상철;김익수;배진식;진병래;김삼은;김종길;윤형주;양성렬;임수호
    • Korean journal of applied entomology
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    • v.39 no.3
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    • pp.181-191
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    • 2000
  • We have sequenced a portion of mitochondrial CO! gene (403 bp) of the firefly, Pyrocoelia rufa, to investigate genetic diversity within population, geographic variation, and phylogenetic relationships among haplotypes. A total of seven mtDNA haplotypes ranging in sequence divergence from 0.2% to 1.2% were obtained from 26 fireflies collected at four localities in Korea: Namhae, Pusan, Muju, and Yongin. The samples collected at the urban area, Pusan, were all fixed with one haplotype, differently those collected at the forest and/or agricultural areas. This appears to suggest that habitat fragmentation and population bottleneck caused by urbanization might have been severe in Pusan. On the other hand, from Muju known as the largest habitat and sanctuary for the firefly, four haplotypes with the maximum sequence divergence of 1.0% were obtained, and this estimate was the highest among the areas studied. The fireflies collected at the isolated islet, Namhae, revealed relatively low haplotype diversity(H=0.25), but one haplotype (PR7) was phylogenetically differentiated from others. This phenomenon was explained in terms of biogeographic history of the island and gene flow in the recent past. Grouping of Muju- Y ongin and Pusan-Namhae, respectively, in the hierarchical genetic analysis suggests the presence of historically occurred, biogeographic barrier against gene flow between them.

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Design and Implementation of a RFID Reader Antenna Optimal Arrangement System (RFID 리더기 안테나 최적 배치 시스템의 설계 및 구현)

  • Soon, Nam-Soon;Yeo, Myung-Ho;Yoo, Jae-Soo
    • The Journal of the Korea Contents Association
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    • v.9 no.10
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    • pp.67-74
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    • 2009
  • Incorrect deployment of RFID readers occurs reader-to-reader interferences in many applications using RFID technologies. Reader-to-reader interference occurs when a reader transmits a signal that interferes with the operation of another reader, thus preventing the second reader from communicating with tags in its interrogation zone. Interference detected by one reader and caused by another reader is referred to as a reader collision. In RFID systems, the reader collision problem is considered to be the bottleneck for the system throughput and reading efficiency. In this paper, we propose a novel RFID reader anti-collision algorithm based on evolutionary algorithm(EA). First, we analyze characteristics of RFID antennas and build database. Also, we propose EA encoding algorithm, fitness algorithm and genetic operators to deploy antennas efficiently. To show superiority of our proposed algorithm, we simulated our proposed algorithm. In the result, our proposed algorithm obtains 95.45% coverage rate and 10.29% interference rate after about 100 generations.

An Efficient Evolutionary Algorithm for Optimal Arrangement of RFID Reader Antenna (RFID 리더기 안테나의 최적 배치를 위한 효율적인 진화연산 알고리즘)

  • Soon, Nam-Soon;Yeo, Myung-Ho;Yoo, Jae-Soo
    • Proceedings of the Korea Contents Association Conference
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    • 2009.05a
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    • pp.715-719
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    • 2009
  • Incorrect deployment of RFID readers occurs reader-to-reader interferences in many applications using RFID technologies. Reader-to-reader interference occurs when a reader transmits a signal that interferes with the operation of another reader, thus preventing the second reader from communicating with tags in its interrogation zone. Interference detected by one reader and caused by another reader is referred to as a reader collision. In RFID systems, the reader collision problem is considered to be the bottleneck for the system throughput and reading efficiency. In this paper, we propose a novel RFID reader anti-collision algorithm based on evolutionary algorithm(EA). First, we analyze characteristics of RFID antennas and build database. Also, we propose EA encoding algorithm, fitness algorithm and genetic operators to deploy antennas efficiently. To show superiority of our proposed algorithm, we simulated our proposed algorithm. In the result, our proposed algorithm obtains 95.45% coverage rate and 10.29% interference rate after about 100 generations.

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Quay Crane Dual-cycle Plan considering Yard Tractor waiting time (야드 트랙터 대기시간을 고려한 크레인 듀얼 사이클 계획)

  • Chung, Chang-Yun;Shin, Jae-Young
    • Proceedings of the Korean Institute of Navigation and Port Research Conference
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    • 2009.10a
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    • pp.220-221
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    • 2009
  • One of the important performance measure for productivity at container terminals is the working productivity in the quay. working scheduling of quay cranes (QCs) gives a significant impact on the quay working productivity. The recent managers of the terminals pay high interests in equipment investment and operation methods with a new concept in order to enhance the quay working productivity. The double cycle or dual cycle, which is a method to increase the quay productivity with no application of new equipment, but with the change of operations, has been received strong attention in academic research. The majority of studies until this time has been realized the quay work as the bottleneck and focused on those works. However, if the QCs do notver, it the Cs d-trotver,(CT) if t the Cs, there would be the pos ibilf tes that the effectiveness of them is decreasedveaused by the longer, if t the Cs. Thus, this paper, suggests the solutions on the con th scheduling for the dual cycle operation considering the YT.

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Rediscovery of haploid breeding in the genomics era (유전체 시대에 반수체 육종의 재발견)

  • Lee, Seulki;Kim, Jung Sun;Kang, Sang-Ho;Sohn, Seong-Han;Won, So Youn
    • Journal of Plant Biotechnology
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    • v.43 no.1
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    • pp.12-20
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    • 2016
  • Advances in DNA sequencing technologies have contributed to revolutionary understanding of many fundamental biological processes. With unprecedented cost-effective and high-throughput sequencing, a single laboratory can afford to de novo sequence the whole genome for species of interest. In addition, population genetic studies have been remarkably accelerated by numerous molecular markers identified from unbiased genome-wide sequences of population samples. As sequencing technologies have evolved very rapidly, acquiring appropriate individual plants or populations is a major bottleneck in plant research considering the complex nature of plant genome, such as heterozygosity, repetitiveness, and polyploidy. This challenge could be overcome by the old but effective method known as haploid induction. Haploid plants containing half of their sporophytic chromosomes can be rapidly generated mainly by culturing gametophytic cells such as ovules or pollens. Subsequent chromosome doubling in haploid plants can generate stable doubled haploid (DH) with perfect homozygosity. Here, classical methodology to generate and identify haploid plants or DH are summarized. In addition, haploid induction by epigenetic regulation of centromeric histone is explained. Furthermore, the utilization of haploid plant in the genomics era is discussed in the aspect of genome sequencing project and population genetic studies.

Physiological and Ecological Characteristics of Lipid-Producing Botryococcus Isolated from the Korean Freshwaters (한국산 고지질 미세조류 Botryococcus의 분포 및 생장 특성)

  • Shin, Sang-Yoon;Jo, Beom-Ho;Lee, Hyung-Gwan;Oh, Hee-Mock
    • Korean Journal of Environmental Biology
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    • v.31 no.4
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    • pp.288-294
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    • 2013
  • Recently, sustainable production of biofuel using algal biomass is being pursued because of its enormous potential. First and foremost, securing superior strains to develop an efficient production system for algal biodiesel through screening or genetic improvement of microalgae is necessary. The genus of Botryococcus is regarded as one of the superior microalgae for biodiesel production due to its ability to accumulate high amounts of lipids and hydrocarbons. However, its low growth rate is a bottleneck for large-scale production and commercialization. The purpose of this study is to obtain indigenous Botryococcus strains which possess high lipid content and biomass productivity. The Botryococcus sp. was isolated from the Seobu Reservoir in Jeju Island and identified as Botryococcus sudeticus J2 by comparative analysis of 18s rRNA gene and ITS regions. The biomass productivity and lipid content of B. sudeticus J2 were 0.116 g $L^{-1}day^{-1}$ and 40.1% of dry wt., respectively. This was higher than the value of B. braunii UTEX 572, which is widely regarded as a superior strain among Botryococcus species. The relatively high growth rate of B. sudeticus J2 was achieved under a light intensity of 240 ${\mu}mol$ photons $m^{-2}s^{-1}$ with ambient air spargingwhen compared to 120 ${\mu}mol$ photons $m^{-2}s^{-1}$ with 2% $CO_2$ supply. In summary, it is likely that the isolated B. sudeticus J2 can be used for the mass cultivation and biodiesel production.