References
- Bandillo N, Raghavan C, Muyco PA, Sevilla MAL, Lobina IT, Dilla-Ermita CJ, Tung C-W, McCouch S, Thomson M, Mauleon R (2013) Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice 6:11 https://doi.org/10.1186/1939-8433-6-11
- Blakeslee AF, Belling J, Farnham ME, Bergner AD (1922) A haploid mutant in the jimson weed, "Datura Stramonium". Science 55:646-647 https://doi.org/10.1126/science.55.1433.646
- Consortium PGS (2011) Genome sequence and analysis of the tuber crop potato. Nature 475:189-195 https://doi.org/10.1038/nature10158
- D'Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488:213-217 https://doi.org/10.1038/nature11241
- Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G (2014) The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science 345:1181-1184 https://doi.org/10.1126/science.1255274
- Diao W-P, Jia Y-Y, Song H, Zhang X-Q, Lou Q-F, Chen J-F (2009) Efficient embryo induction in cucumber ovary culture and homozygous identification of the regenerants using SSR markers. Scientia horticulturae 119:246-251 https://doi.org/10.1016/j.scienta.2008.08.016
- Dohm JC, Minoche AE, Holtgrawe D, Capella-Gutierrez S, Zakrzewski F, Tafer H, Rupp O, Sorensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldon T, Lehrach H, Weisshaar B, Himmelbauer H (2014) The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505:546-549 https://doi.org/10.1038/nature12817
- Ferrie AMR, Epp DJ, Keller WA (1995) Evaluation of Brassica rapa L. genotypes for microspore culture response and identification of a highly embryogenic line. Plant Cell Reports 14:580-584
- Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E (2012) The genome of melon (Cucumis melo L.). Proceedings of the National Academy of Sciences 109:11872-11877 https://doi.org/10.1073/pnas.1205415109
- Guha S, Maheshwari SC (1964) In vitro production of embryos from anthers of datura. Nature 204:497-497
- Guha S, Maheshwari SC (1966) Cell division and differentiation of embryos in the pollen grains of datura in vitro. Nature 212:97-98 https://doi.org/10.1038/212097a0
- Han D-S, Niimi Y, Nakano M (1997) Regeneration of haploid plants from anther cultures of the Asiatic hybrid lily 'Connecticut King'. Plant cell, tissue and organ culture 47:153-158 https://doi.org/10.1007/BF02318951
- Hofinger BJ, Huynh OA, Jankowicz-Cieslak J, Müller A, Otto I, Kumlehn J, Till BJ (2013) Validation of doubled haploid plants by enzymatic mismatch cleavage. Plant methods 9:43 https://doi.org/10.1186/1746-4811-9-43
- Huang BE, George AW, Forrest KL, Kilian A, Hayden MJ, Morell MK, Cavanagh CR (2012) A multiparent advanced generation inter-cross population for genetic analysis in wheat. Plant biotechnology journal 10:826-839 https://doi.org/10.1111/j.1467-7652.2012.00702.x
- Huang BE, Verbyla K, Verbyla A, Raghavan C, Singh V, Gaur P, Leung H, Varshney R, Cavanagh C (2015) MAGIC populations in crops: current status and future prospects. Theor Appl Genet 128:999-1017 https://doi.org/10.1007/s00122-015-2506-0
- Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P (2009) The genome of the cucumber, Cucumis sativus L. Nature genetics 41:1275-1281 https://doi.org/10.1038/ng.475
- Jaillon O, Aury J-M, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-467 https://doi.org/10.1038/nature06148
- Kasha K, Kao K (1970) High frequency haploid production in barley (Hordeum vulgare L.). Nature 225:874-876 https://doi.org/10.1038/225874a0
- Kim K-M, Nam W-I, Kwon Y-S, Sohn J-K (2004) Development of doubled-haploid population and construction of genetic map using SSR markers in rice. Korean J Plant Biotechnol 31:179-184 https://doi.org/10.5010/JPB.2004.31.3.179
- Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R (2009) A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet 5:e1000551 https://doi.org/10.1371/journal.pgen.1000551
- Kristiansen K, Andersen S (1993) Effects of donor plant temperature, photoperiod, and age on anther culture response of Capsicum annuum L. Euphytica 67:105-109 https://doi.org/10.1007/BF00022732
- Lu CS, Sharma HC, Ohm HW (1991) Wheat anther culture: effect of genotype and environmental conditions. Plant Cell, Tissue and Organ Culture 24:233-236 https://doi.org/10.1007/BF00033482
-
Mackay IJ, Bansept-Basler P, Barber T, Bentley AR, Cockram J, Gosman N, Greenland AJ, Horsnell R, Howells R, O'Sullivan DM (2014) An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation. G3:
$Genes{\mid}\;Genomes{\mid}\;Genetics$ 4:1603-1610 - Maheshwari S, Tan EH, West A, Franklin F, Comai L, Chan S (2015) Naturally occurring differences in CENH3 affect chromosome segregation in zygotic mitosis of hybrids. PLoS genetics 11:e1004970-e1004970 https://doi.org/10.1371/journal.pgen.1004970
- Malik MR, Wang F, Dirpaul JM, Zhou N, Hammerlindl J, Keller W, Abrams SR, Ferrie AMR, Krochko JE (2008) Isolation of an embryogenic line from non-embryogenic Brassica napus cv. Westar through microspore embryogenesis. Journal of Experimental Botany 59:2857-2873 https://doi.org/10.1093/jxb/ern149
- McKone MJ, Halpern SL (2003) The Evolution of Androgenesis. The American Naturalist 161:641-656 https://doi.org/10.1086/368291
- Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452:991-996 https://doi.org/10.1038/nature06856
- Mohammadi PP, Moieni A, Ebrahimi A, Javidfar F (2012) Doubled haploid plants following colchicine treatment of microsporederived embryos of oilseed rape (Brassica napus L.). Plant Cell, Tissue and Organ Culture 108:251-256 https://doi.org/10.1007/s11240-011-0036-2
- Murovec J, Bohanec B (2011) Haploids and doubled haploids in plant breeding, p. 87-106. In: I.Y. Abdurakhmonov (ed.). Plant Breeding. InTech, Croatia.
- Murovec J, Bohanec B (2013) Haploid induction in Mimulus aurantiacus Curtis obtained by pollination with gamma irradiated pollen. Scientia Horticulturae 162:218-225 https://doi.org/10.1016/j.scienta.2013.08.012
- Niizeki H, Oono K (1968) Induction of haploid rice plant from anther culture. Proceedings of the Japan Academy 44:554-557
- Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin Y-C, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A (2013) The Norway spruce genome sequence and conifer genome evolution. Nature 497:579-584 https://doi.org/10.1038/nature12211
- Park C-H, Lee M-S, Choi D-G, Cho J-H, Hyun S-W, Hwang C-J, So J-D, Choi B-J (1990) Effect of pollen stage and growth regulators on anther culture of Pulsatilla koreana Nakai. Korean J Plant Tissue Culture 17:239-248
- Pascual L, Desplat N, Huang BE, Desgroux A, Bruguier L, Bouchet JP, Le QH, Chauchard B, Verschave P, Causse M (2015) Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant biotechnology journal 13:565-577 https://doi.org/10.1111/pbi.12282
- Pathirana R, Frew T, Hedderley D, Timmerman-Vaughan G, Morgan E (2011) Haploid and doubled haploid plants from developing male and female gametes of Gentiana triflora. Plant cell reports 30:1055-1065 https://doi.org/10.1007/s00299-011-1012-3
- Qin X, Rotino GL (1995) Chloroplast number in guard cells as ploidy indicator of in vitro-grown androgenic pepper plantlets. Plant Cell, Tissue and Organ Culture 41:145-149 https://doi.org/10.1007/BF00051583
- Ravi M, Chan SW (2010) Haploid plants produced by centromeremediated genome elimination. Nature 464:615-618 https://doi.org/10.1038/nature08842
- Ryu J-H, Doo H-S, Kwon T-H (1992) Induction of haploid plants by anther culture in sesame. Korean J Plant Tissue Culture 19:171-177
- San Noeum L (1976) Haploides d'Hordeum vulgare L. par culture in vitro d'ovaries non fecondes. Ann Amelior Plant 26:751-754
- Sannemann W, Huang BE, Mathew B, Leon J (2015) Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept. Molecular Breeding 35:1-16 https://doi.org/10.1007/s11032-015-0202-z
- Seguí-Simarro J (2010) Androgenesis Revisited. Bot Rev 76:377-404 https://doi.org/10.1007/s12229-010-9056-6
- Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN (2012) Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proceedings of the National Academy of Sciences 109:4227-4232 https://doi.org/10.1073/pnas.1117277109
- Shrestha S, Kang W-H (2009) Effect of genotype of donor plants on the success of anther culture in sweet pepper (Capsicum annuum L.). Korean Journal of Plant Resources 22:506-512
- Smith R, Kamp M, Davies R (1981) Reduced plant size of haploid african violets. In Vitro 17:385-387 https://doi.org/10.1007/BF02626736
- Tang F, Tao Y, Zhao T, Wang G (2006) In vitro production of haploid and doubled haploid plants from pollinated ovaries of maize (Zea mays). Plant cell, tissue and organ culture 84:233-237 https://doi.org/10.1007/s11240-005-9017-7
- Thomas TD (2008) The role of activated charcoal in plant tissue culture. Biotechnology Advances 26:618-631 https://doi.org/10.1016/j.biotechadv.2008.08.003
- Upadhyay A, Chacko A, Gandhimathi A, Ghosh P, Harini K, Joseph A, Joshi A, Karpe S, Kaushik S, Kuravadi N, Lingu C, Mahita J, Malarini R, Malhotra S, Malini M, Mathew O, Mutt E, Naika M, Nitish S, Pasha S, Raghavender U, Rajamani A, Shilpa S, Shingate P, Singh H, Sukhwal A, Sunitha M, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R (2015) Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties. BMC Plant Biology 15:212 https://doi.org/10.1186/s12870-015-0562-x
-
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D (2010) The genome of the domesticated apple (Malus
$\times$ domestica Borkh.). Nature genetics 42:833-839 https://doi.org/10.1038/ng.654 - Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F (2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature genetics 45:487-494 https://doi.org/10.1038/ng.2586
- Wang H, Dong B, Jiang J, Fang W, Guan Z, Liao Y, Chen S, Chen F (2014) Characterization of in vitro haploid and doubled haploid Chrysanthemum morifolium plants via unfertilized ovule culture for phenotypical traits and DNA methylation pattern. Frontiers in plant science 5:738
- Wedzony M, Forster BP, Zur I, Golemiec E, Szechynska-Hebda M, Dubas E, Gotebiowska G, Wedzony M (2009) Progress in doubled haploid technology in higher plants, p 1-33. In: A. Touraev, B. Forster, SM Jain (eds). Advances In Haploid Production In Higher Plants. Springer, Netherlands.
- Xiao L, Yang G, Zhang L, Yang X, Zhao S, Ji Z, Zhou Q, Hu M, Wang Y, Chen M (2015) The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration. Proceedings of the National Academy of Sciences 112:5833-5837 https://doi.org/10.1073/pnas.1505811112
- Zeng X, Long H, Wang Z, Zhao S, Tang Y, Huang Z, Wang Y, Xu Q, Mao L, Deng G (2015) The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau. Proceedings of the National Academy of Sciences 112:1095-1100 https://doi.org/10.1073/pnas.1423628112
- Zhang H, Tan E, Suzuki Y, Hirose Y, Kinoshita S, Okano H, Kudoh J, Shimizu A, Saito K, Watabe S, Asakawa S (2014) Dramatic improvement in genome assembly achieved using doubled-haploid genomes. Scientific Reports 4:6780 https://doi.org/10.1038/srep06780
- Zhang X, Wu Q, Li X, Zheng S, Wang S, Guo L, Zhang L, Custers JB (2011) Haploid plant production in Zantedeschia aethiopica 'Hong Gan' using anther culture. Scientia horticulturae 129:335-342 https://doi.org/10.1016/j.scienta.2011.03.045