• 제목/요약/키워드: gene interaction

검색결과 761건 처리시간 0.022초

림프절 유래 fibroblastic reticular cell의 효율적 항원처리 관련성에 대한 연구 (Fibroblastic Reticular Cell Derived from Lymph Node Is Involved in the Assistance of Antigen Process)

  • 김민환;이종환
    • 생명과학회지
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    • 제26권9호
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    • pp.1027-1032
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    • 2016
  • 항원은 병원체로부터 유래한 질병인자다. 생명체는 항원에 대항하는 방어계인 면역계를 가지고 있다. 항원은 식세포작용, 항체, 보체 활성화, NK세포 혹은 MHC 분자를 통한 세포독성 T세포와 같은 방법을 통해서 처리된다. 림프절은 스트로마세포와 3차원 네트워크를 통해서 구성되어 있다. Fibroblastic reticular cells (FRC)는 림프절 T zone에서 T세포와 상호작용한다. FRC는 세포외 기질 생산과 homing 케모카인을 생산하여 감염에 대비한다. 하지만, FRC가 항원처리과정에 관련되어있다는 보고는 없다. 본 연구는 FRC의 항원처리 관련성에 대한 연구이다. 이를 위해 FRC는 대식세포, T세포, LPS, 그리고 TNFα와 같은 다양한 감염상황에 노출시켜 연구를 진행하였다. FRC가 대식세포 및 T세포와 공배양 했을 때 FRC가 형태적 변화와 FRC간 빈 공간 형성이 관찰 되었다. MMP 활성은 Y27632와 T세포에 의해 조절 되었다. 더욱이, 염증물질인 TNFα를 FRC에 처리 후 마이크로어레이를 통한 결과에서 부착분자와 MHC I antigen transporter의 발현을 조절하는 것으로 나타났다. FRC 단일층에 LPS와 대식 세포를 공배양 했을 때 NO 생성력이 크게 향상되었다. GFP antigen을 FRC와 대식세포 공배양군에 처리 했을 때 항원 흡수율이 증가되었다. 이러 결과는 FRC가 항원처리에 관여하고 있다는 것을 의미하며 이는 림프절이 항원처리과정에 연관되어 있다는 것을 제시한다.

위 선암종에서의 E-cadherin, $\beta$-catenin 및 c-Met 단백 발현에 대한 연구 (Study of the Expression of E-cadherin, $\beta$-catenin, and c-Met in Gastric Adenocarcinomas)

  • 조성진;김민경;신봉경;민연기;조민영;서성옥;원남희;채양석
    • Journal of Gastric Cancer
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    • 제1권2호
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    • pp.92-99
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    • 2001
  • Purpose: E-cadherin is an adhesion molecule essential for tight connection between cells, forming the cadherin/catenin complex. Truncated $\beta$-catenin disrupts the interaction between E-cadherin and $\alpha$-catenin, leading to the loss of intercellular adhesion. Met protein, the hepatocyte growth factor receptor, plays important roles in signal transduction. We investigated the relationships between the expressions of E-cadherin, $\beta$-catenin, and c-met protein and the clinicopathological and prognostic parameters in gastric adenocarcinomas. Materials and Methods: The patterns of E-cadherin, $\beta$-catenin, and c-met protein expression were studied using immunohistochemistry in formalin-fixed, paraffin-embedded archival tissues from 76 surgically resected gastric adenocarcinomas. Results: Increased expressions of E-cadherin, $\beta$-catenin, and c-met were more significantly correlated in early gastric cancers (EGC) than in advanced gastric cancers (AGC) (P=0.002, P=0.003 and P=0.026). The positive immunoreactivities of all three markers were markedly lower in signet ring-cell type and poorly differentiated type lesions than in intestinal-type lesions. Decreased expression of the $\beta$-catenin protein correlated well with increased tumor invasion depth (P=0.039), and increased lymph node metastasis correlated well with reduced expression of c-met (P=0.046). Conclusion: In gastric cancers, reduced expressions of the E-cadherin, $\beta$-catenin, and c-met proteins may play some role in poorer tumor differentiation, deeper tumor invasion, and increased lymph node metastasis. Also, the c-met gene is thought to play a specific role in the mechanism of the yet unknown catenin action.

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Cloning, Over-expression, and Characterization of YjgA, a Novel ppGpp-binding Protein

  • Gnanasekaran, Gopalsamy;Pan, SangO;Jung, Wontae;Jeong, Kwangjoon;Jeong, Jae-Ho;Rhee, Joon Haeng;Choy, Hyon E.;Jung, Che-Hun
    • Bulletin of the Korean Chemical Society
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    • 제34권8호
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    • pp.2419-2424
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    • 2013
  • Guanosine-5'-diphosphate 3'-diphosphate (ppGpp) serves as alarmone in bacterial stringent responses. In this study, an affinity column was constructed by immobilizing ppGpp to NHS-Sepharose for isolating ppGpp-binding proteins. A novel ppGpp-binding protein, YjgA, was isolated and characterized by MALDI-TOF MS (matrix-assisted laser desorption ionization-time-of-flight mass spectrometry) coupled with two-dimensional gel electrophoresis. YjgA and truncated forms of YjgA were cloned and over-expressed in BL21 (DE3). The binding affinity of YjgA to ppGpp was determined by equilibrium dialysis. The interaction of YjgA with ppGpp was very specific, considering that the dissociation constant of YjgA with ppGpp was measured as $5.2{\pm}2.0{\mu}M$, while the affinities to GTP and GDP were about 60 and 30 times weaker than ppGpp. Expression of yjgA gene in Escherichia coli K-12 MG1655 was examined by reverse transcription polymerase chain reaction (RT-PCR). RT-PCR results revealed that yjgA was expressed from early to late stationary phase. The yjgA deletion mutant exhibited decreased cell number at stationary phase compared to parent strain and the over-expression of YjgA increased the cell number. These results suggested that YjgA might stimulate cell division under stationary phase. In most prokaryotic genome, about half of the protein candidates are hypothetical, that are expected to be expressed but there is no experimental report on their functions. The approach utilized in this study may serve as an effective mean to probe the functions of hypothetical proteins.

Fermented ginseng extract, BST204, disturbs adipogenesis of mesenchymal stem cells through inhibition of S6 kinase 1 signaling

  • Yi, Sang Ah;Lee, Jieun;Park, Sun Kyu;Kim, Jeom Yong;Park, Jong Woo;Lee, Min Gyu;Nam, Ki Hong;Park, Jee Hun;Oh, Hwamok;Kim, Saetbyul;Han, Jihoon;Kim, Bo Kyung;Jo, Dong-Gyu;Han, Jeung-Whan
    • Journal of Ginseng Research
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    • 제44권1호
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    • pp.58-66
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    • 2020
  • Background: The biological and pharmacological effects of BST204, a fermented ginseng extract, have been reported in various disease conditions. However, its molecular action in metabolic disease remains poorly understood. In this study, we identified the antiadipogenic activity of BST204 resulting from its inhibition of the S6 kinase 1 (S6K1) signaling pathway. Methods: The inhibitory effects of BST204 on S6K1 signaling were investigated by immunoblot, nuclear fractionation, immunoprecipitation analyses. The antiadipogenic effect of BST204 was evaluated by measuring mRNA levels of adipogenic genes and by chromatin immunoprecipitation and quantitative real-time polymerase chain reaction analysis. Results: Treatment with BST204 inhibited activation and nuclear translocation of S6K1, further decreasing the interaction between S6K1 and histone H2B in 10T1/2 mesenchymal stem cells. Subsequently, phosphorylation of H2B at serine 36 (H2BS36p) by S6K1 was reduced by BST204, inducing an increase in the mRNA expression of Wnt6, Wnt10a, and Wnt10b, which disturbed adipogenic differentiation and promoted myogenic and early osteogenic gene expression. Consistently, BST204 treatment during adipogenic commitment suppressed the expression of adipogenic marker genes and lipid drop formation. Conclusion: Our results indicate that BST204 blocks adipogenesis of mesenchymal stem cells through the inhibition of S6K1-mediated histone phosphorylation. This study suggests the potential therapeutic strategy using BST204 to combat obesity and musculoskeletal diseases.

원형질체(原形質體) 융합(融合)에 의한 느타리버섯과 잔나비걸상버섯의 이목간(異目間) 교잡(交雜) (Interorder Hybridization between Pleurotus ostreatus and Elfvingia applanata by Protoplast Fusion)

  • 유영복
    • 한국균학회지
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    • 제22권1호
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    • pp.107-116
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    • 1994
  • 원형질체 융합으로 주름버섯목 느타리버섯과 민주름버섯목 잔나비걸상버섯과의 이목간 체세포잡종을 36균주 얻어 꺽쇠연결체 clamp connections있는 2균주와 꺽쇠연결체 없는 3균주의 자실체를 형성하였다. 꺽쇠연결체 없는 융합주는 한천배지나 액체배지에서는 자실체를 얻을 수 없었다. 그러나 톱밥배지에서 균사가 완전히 성장한 후 일정한 광과 온도를 유지한 결과 꺽쇠연결체가 있는 균사가 새로이 성장하였으며 거의 완전하게 다시 성장한 후 원기가 유도되고 자실체가 성숙하였다. 버섯자실체 특성은 느타리버섯과 유사하였으며, 갓 색택은 느타리와는 다소 다르게 나타났다. 3균주의 담자포자로 유전형질의 분리와 유전자재조합을 조사한 결과 꺽쇠연결체 있는 2균주는 비정상적인 분리 현상을 보였는데, 양친에 없는 ane, rib, ane rib 표지를 가진 것이 나타났다. 3종류의 random primer를 이용하여 핵산 연쇄 중합반응 polymerase chain reaction(PCR)에 의한 4개 체세포잡종의 염색체 DNA의 다형화현상을 조사한 결과 느타리친과 유사한 양상을 가졌으나 비양친의 밴드를 나타내었으며 primer #87, #125의 1.2kbp, 0.6kbp에서 각각 뚜렷하게 구분되었다. 4개 체세포잡종의 미토콘드리아 DNA의 제한효소 EcoR1과 HindIII의 절단결과 2균주는 느타리와 동일하였으며 2균주는 양친과 다른 양상을 나타내었다. 원형질체 융합주, 융합주 자실체로부터의 조직배양주, 융합주의 담자포자 발아주, 양친주를 포함하여 총16균주를 등전점 전기영동으로 동위효소 esterase를 분석한 결과 융합주 6균주중 5균주는 느타리와 유사하였으며 1균주는 양친과 전혀 다른 새로운 밴드양상으로 이들 모두 양친과 뚜렷이 구분되었다. 융합주와 자실체 조직배양주는 밴드양상이 거의 유사하였으나 $F^2$는 다소 차이가 나타났다.

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스마트워치 사용자감성에 기반한 생체신호측정용 스마트 텍스타일의 요구조건 탐색 (Exploring Requirements of the Smart Textiles for Bio-Signal Measurement Based on Smart Watch User Sensibility)

  • 장은지;김인환;이유진;조길수
    • 감성과학
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    • 제20권4호
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    • pp.89-100
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    • 2017
  • 초연결사회의 시대가 도래하여 시간과 공간의 제약없이 효율적으로 정보를 전달할 수 있는 스마트 디바이스의 사용이 보편화되었다. 스마트 디바이스는 사람과 사물 간의 상호작용을 통하여 정보를 전달할 수 있도록 점차 웨어러블 형태로 발전하고 있으며, 의복 형태의 스마트 디바이스인 스마트의류는 인체에 가장 밀착한 상태로 각종 생체신호 등의 측정이 가능하기 때문에 미래 일상생활에서 사용도가 높아질 것으로 주목받고 있다. 기존에 개발된 스마트의류는 의복에 전자장치를 부착한 형태로 개발되어 기기 이물감으로 인해 착용 시 사용자의 불편을 야기하여 지속적으로 생체신호를 측정하기에 한계가 있었다. 이에 따라 점차 전자장치가 텍스타일 내의 한 요소로 통합되어 있는 스마트 텍스타일을 기반으로 한 스마트의류의 개발이 요구된다. 본 연구에서는 현재 소비자에게 가장 근접한 웨어러블 디바이스인 스마트워치 사용자를 대상으로 하여 사용경험에 기반한 감성을 통해 웨어러블 디바이스에서 사용자가 필요로 하는 요구조건을 탐색하고자 하였다. 스마트워치 사용자의 경험에 기반한 감성에 대해 구체적인 답변을 얻고자 반구조화 된 심층인터뷰를 통해 질적 연구를 수행하였으며, 심층인터뷰 내용을 바탕으로 사용자감성을 기능적, 심미적, 사회적, 경험적 네 가지 측면으로 분류하였다. 측면별로 감성키워드를 설정하여 빈도 수 확인을 통해 스마트워치 사용자의 관심도를 알아보았다. 본 연구의 결과를 미래의 웨어러블 디바이스로 주목받고 있는 스마트의류 제작에 필요한 스마트 텍스타일 개발을 위한 기초자료로 활용하고자 한다.

Interspecies Transfer and Regulation of Pseudomonas stutzeri A1501 Nitrogen Fixation Island in Escherichia coli

  • Han, Yunlei;Lu, Na;Chen, Qinghua;Zhan, Yuhua;Liu, Wei Liu;Lu, Wei;Zhu, Baoli;Lin, Min;Yang, Zhirong;Yan, Yongliang
    • Journal of Microbiology and Biotechnology
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    • 제25권8호
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    • pp.1339-1348
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    • 2015
  • Until now, considerable effort has been made to engineer novel nitrogen-fixing organisms through the transfer of nif genes from various diazotrophs to non-nitrogen fixers; however, regulatory coupling of the heterologous nif genes with the regulatory system of the new host is still not well understood. In this work, a 49 kb nitrogen fixation island from P. stutzeri A1501 was transferred into E. coli using a novel and efficient transformation strategy, and a series of recombinant nitrogen-fixing E. coli strains were obtained. We found that the nitrogenase activity of the recombinant E. coli strain EN-01, similar to the parent strain P. stutzeri A1501, was dependent on external ammonia concentration, oxygen tension, and temperature. We further found that there existed a regulatory coupling between the E. coli general nitrogen regulatory system and the heterologous P. stutzeri nif island in the recombinant E. coli strain. We also provided evidence that the E. coli general nitrogen regulator GlnG protein was involved in the activation of the nif-specific regulator NifA via a direct interaction with the NifA promoter. To the best of our knowledge, this work plays a groundbreaking role in increasing understanding of the regulatory coupling of the heterologous nitrogen fixation system with the regulatory system of the recipient host. Furthermore, it will shed light on the structure and functional integrity of the nif island and will be useful for the construction of novel and more robust nitrogen-fixing organisms through biosynthetic engineering.

Lnk is an important modulator of insulin-like growth factor-1/Akt/peroxisome proliferator-activated receptor-gamma axis during adipogenesis of mesenchymal stem cells

  • Lee, Jun Hee;Lee, Sang Hun;Lee, Hyang Seon;Ji, Seung Taek;Jung, Seok Yun;Kim, Jae Ho;Bae, Sun Sik;Kwon, Sang-Mo
    • The Korean Journal of Physiology and Pharmacology
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    • 제20권5호
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    • pp.459-466
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    • 2016
  • Adipogenic differentiation of mesenchymal stem cells (MSCs) is critical for metabolic homeostasis and nutrient signaling during development. However, limited information is available on the pivotal modulators of adipogenic differentiation of MSCs. Adaptor protein Lnk (Src homology 2B3 [SH2B3]), which belongs to a family of SH2-containing proteins, modulates the bioactivities of different stem cells, including hematopoietic stem cells and endothelial progenitor cells. In this study, we investigated whether an interaction between insulin-like growth factor-1 receptor (IGF-1R) and Lnk regulated IGF-1-induced adipogenic differentiation of MSCs. We found that wild-type MSCs showed greater adipogenic differentiation potential than $Lnk^{-/-}$ MSCs. An ex vivo adipogenic differentiation assay showed that $Lnk^{-/-}$ MSCs had decreased adipogenic differentiation potential compared with wild-type MSCs. Interestingly, we found that Lnk formed a complex with IGF-1R and that IGF-1 induced the dissociation of this complex. In addition, we observed that IGF-1-induced increase in the phosphorylation of Akt and mammalian target of rapamycin was triggered by the dissociation of the IGF-1R-Lnk complex. Expression levels of a pivotal transcription factor peroxisome proliferator-activated receptor gamma ($PPAR-{\gamma}$) and its adipogenic target genes (LPL and FABP4) significantly decreased in $Lnk^{-/-}$ MSCs. These results suggested that Lnk adaptor protein regulated the adipogenesis of MSCs through the $IGF-1/Akt/PPAR-{\gamma}$ pathway.

콩시스트 선충 race14에 대한 저항성 유전자좌 구명 (Identification of Quantitative Trait Loci for Resistance to Soybean Cyst Nematode Race 14)

  • Choi, In-Soo;Kim, Yong-Chul
    • 생명과학회지
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    • 제13권4호
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    • pp.375-382
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    • 2003
  • 본 연구는 콩 cyst 선충 race 14에 대한 저항성 QTLs 구명을 목적으로 한 바 결과를 요약하면 다음과 같다. 1. 회귀분석 결과 30개의 marker들(29 RAPD, 1 RFLP)에서 cyst 선충 race 14의 저항성에 대한 유의성이 인정되었다. 2. MAPMAKER/QTL 분석 결과 2개의 QTL들이 구명되었는데, 이 QTL들은 2개의 linkage groups (LGC-7와 LGC-9)에 위치하였으며, 모두 우성유전 양상을 나타내었다. 3. 다중회귀분석 결과 2개의 marker들($B15^2$$H06^1$)로 구성된 조합에서 가장 높은 표현적 변이의 값(22.9%)을 나타내었다. 콩 cyst 선충 rare 14에 대한 표현적 변이를 충분히 설명하기 위해서는 지속적인 QTL 구명 연구가 요구된다.

Pathogen Associated Molecular Pattern (PAMP)-Triggered Immunity Is Compromised under C-Limited Growth

  • Park, Hyeong Cheol;Lee, Shinyoung;Park, Bokyung;Choi, Wonkyun;Kim, Chanmin;Lee, Sanghun;Chung, Woo Sik;Lee, Sang Yeol;Sabir, Jamal;Bressan, Ray A.;Bohnert, Hans J.;Mengiste, Tesfaye;Yun, Dae-Jin
    • Molecules and Cells
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    • 제38권1호
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    • pp.40-50
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    • 2015
  • In the interaction between plants and pathogens, carbon (C) resources provide energy and C skeletons to maintain, among many functions, the plant immune system. However, variations in C availability on pathogen associated molecular pattern (PAMP) triggered immunity (PTI) have not been systematically examined. Here, three types of starch mutants with enhanced susceptibility to Pseudomonas syringae pv. tomato DC3000 hrcC were examined for PTI. In a dark period-dependent manner, the mutants showed compromised induction of a PTI marker, and callose accumulation in response to the bacterial PAMP flagellin, flg22. In combination with weakened PTI responses in wild type by inhibition of the TCA cycle, the experiments determined the necessity of C-derived energy in establishing PTI. Global gene expression analyses identified flg22 responsive genes displaying C supply-dependent patterns. Nutrient recycling-related genes were regulated similarly by C-limitation and flg22, indicating re-arrangements of expression programs to redirect resources that establish or strengthen PTI. Ethylene and NAC transcription factors appear to play roles in these processes. Under C-limitation, PTI appears compromised based on suppression of genes required for continued biosynthetic capacity and defenses through flg22. Our results provide a foundation for the intuitive perception of the interplay between plant nutrition status and pathogen defense.