• Title/Summary/Keyword: fla

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Near-Isogenic Lines for Genes Conferring Hypersensitive Resistance to Bacterial Spot in Chili Pepper

  • Kim, Byung-Soo;Kim, Young-Chun;Shin, Kwang-Sik;Kim, Jeong-Hoon
    • The Plant Pathology Journal
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    • v.23 no.3
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    • pp.155-160
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    • 2007
  • In order to develop chili pepper bacterial spot resistant cultivars and near-isogenic lines (NILs) to prompt the molecular mapping of the resistance gene, we have run backcross breeding program since 1994. Two resistance genes against Xanthomonas axonopodis pv. vesicatoria Bs2 from Fla. XVR 3-25 and Bs3 from our breeding line 25-11-3-2, were introduced into a land race, Chilseongcho (abbreviated to Chilseong hereafter) with good fruit guality. We report here the testing of $BC_4F_3\;to\;BC_4F_5$. We found that $BC_4F_5$ lines of the crosses were homozygous with respect to the respective genes of introduction. The lines, in which Bs2 gene was introduced, were hypersensitively resistant to both race 1 and race 3 of X. axonopodis pv. vesicatoria, whereas, those in which Bs3 was introduced were resistant to race 1.

Super Multi-View 3-D Display System using Vibrating Scanner Array(ViSA)

  • Jeon, Ho-In;Jung, Nak-Hee;Choi, Jin-San;Kang, Yo-Seek;Choi, Se-Ha;Shin, Sang-Hun;Son, Jung-Yung
    • Journal of the Optical Society of Korea
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    • v.4 no.1
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    • pp.37-42
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    • 2000
  • In this paper, we propose a super multi-view (SMV) 3-D display system using a vibrating scanner array (ViSA). The parallel beam scanning using a vibrating scanner array is performed by moving back and forth an array of curvature-compensated mirrors attached to two vibrating membranes. The parallel laser beam scanner array can replace the polygon mirror scanner which has been used in the SMV 3-D display system based on the focused light array(FLA) concept. The proposed system has great advantages in the sense that it requires neither huge imaging optics normechanical scanning parts. Some mathematical analyses and fundamental limitations of the proposed system are presented. The proposed vibrating scanner array, after some modifications and refinements, will replace polygon mirror-based scanners in the near future.

Characterization of antimicrobial resistance and application of RFLP for epidemiological monitoring of thermophilic Campylobacter spp. isolated from dogs and humans in Korea

  • Cho, Hyun-Ho;Kim, Sang-Hyun;Min, Wongi;Ku, Bok-Kyung;Kim, Jong-Hyun;Kim, Yong-Hwan
    • Korean Journal of Veterinary Research
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    • v.54 no.2
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    • pp.91-99
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    • 2014
  • An antimicrobial susceptibility test was conducted to compare the resistance rates among Campylobacter spp. isolates from dogs (n = 50) raised under diverse conditions and humans (n = 50). More than 60% of Campylobacter (C.) jejuni from dogs and humans showed resistance to nalidixic acid, enrofloxacin and ciprofloxacin. C. jejuni isolates from humans showed higher resistance to tetracycline (83.3%) and ampicillin (91.3%) than those from dogs. None of the C. jejuni or Campylobacter coli isolates from humans or dogs were resistant to erythromycin. Overall, 85% of Campylobacter spp. isolates showed a multidrug resistant phenotype. Nucleotide sequencing analysis of the gryA gene showed that 100% of $NA^R/CIP^R$ C. jejuni isolates from dogs and humans had the Thr-$86^{th}$-Ile mutation, which is associated with fluoroquinolone resistance. flaA PCR restriction fragment length polymorphism (RFLP) typing to differentiate the isolates below the species level revealed 12 different clusters out of 73 strains. The human isolates belonged to eight different RFLP clusters, while five clusters contained dog and human isolates.

A Study on Fuzzy Logic Method for the Assessment of Tunnel Concrete Lining (터널 콘크리트 라이닝의 상태평가를 위한 퍼지추론기법 연구)

  • 이성원;조만섭;이광호;이석원;배규진;안영기
    • Tunnel and Underground Space
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    • v.9 no.4
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    • pp.337-349
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    • 1999
  • There are many difficulties to the engineers in the assessment of tunnel safety. Consequently, objective assessment of concrete lining is hard even by the experts of tunnel assessment. Of several difficulties in the assessment of tunnel safety, in this study, tunnel concrete lining was focussed iud evaluated quantitatively and objectively using the Fuzzy theory which it generally considered to be appropriate for the assessment, control and judgment. T-FLAS based on fuzzy theory was developed in this study for the quantitative and objective assessment of the concrete lining in tunnels. Based on the application of T-FLAS on the evaluated field data, it was shown that the assessment system using fuzzy theory(T-FLAS) can be the effective and objective method for the assessment of concrete lining.

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Numerical Analysis of the Mechanical and Hydraulic behavior of Concrete Plug in Underground Storage Cavern (지하저장공동에서의 콘크리트 플러그의 역학적 및 수리적 거동에 관한 수치해석적 연구)

  • 박병기;이희근;전석원;박의섭
    • Tunnel and Underground Space
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    • v.10 no.3
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    • pp.344-354
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    • 2000
  • The concrete plug in an underground cavern prevents the stored product (oil, gas, etc) from leaking and the excessive inflow of underground water, so it plays an important role in construction and operation of the storage cavern. Additionally, it should maintain its stability under every possible loading condition. Once the plug is constructed, the cavern is isolated from the external access. Therefore, mechanical and hydraulic consideration should be made in construction to fulfill its function. Therefore, in this study, numerical analyses were conducted to study the optimal shape and thickness of the plug with respect to the various conditions of installation depth, the shape of the plug, in-situ stress ratio (K), the condition of rock-plug interface, and the effect of Excavation Damaged Zone (EDZ). This paper also presents the effect of slot depth on the hydraulic behavior of the plug. These analyses were carried out by using the 2-dimensional finite difference code, rm FLAC, and the 3D code, rm FLAC$\^$3D/.

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Free-Living Amoeba Vermamoeba vermiformis Induces Allergic Airway Inflammation

  • Lee, Da-In;Park, Sung Hee;Kang, Shin-Ae;Kim, Do Hyun;Kim, Sun Hyun;Song, So Yeon;Lee, Sang Eun;Yu, Hak Sun
    • Parasites, Hosts and Diseases
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    • v.60 no.4
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    • pp.229-239
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    • 2022
  • The high percentage of Vermamoeba was found in tap water in Korea. This study investigated whether Vermamoeba induced allergic airway inflammation in mice. We selected 2 free-living amoebas (FLAs) isolated from tap water, which included Korean FLA 5 (KFA5; Vermamoeba vermiformis) and 21 (an homolog of Acanthamoeba lugdunensis KA/E2). We axenically cultured KFA5 and KFA21. We applied approximately 1×106 to mice's nasal passages 6 times and investigated their pathogenicity. The airway resistance value was significantly increased after KFA5 and KFA21 treatments. The eosinophil recruitment and goblet cell hyperplasia were concomitantly observed in bronchial alveolar lavage (BAL) fluid and lung tissue in mice infected with KFA5 and KFA21. These infections also activated the Th2-related interleukin 25, thymic stromal lymphopoietin, and thymus and activation-regulated chemokines gene expression in mouse lung epithelial cells. The CD4+ interleukin 4+ cell population was increased in the lung, and the secretion of Th2-, Th17-, and Th1-associated cytokines were upregulated during KFA5 and KFA21 infection in the spleen, lung-draining lymph nodes, and BAL fluid. The pathogenicity (allergenicity) of KFA5 and KFA21 might not have drastically changed during the long-term in vitro culture. Our results suggested that Vermamoeba could elicit allergic airway inflammation and may be an airway allergen.

Polycyclic Aromatic Hydrocarbons in Industrial Organic Sludge from Wastewater Treatment Facilities in Korea (폐수처리시설에서 발생된 유기성 슬러지에 함유된 다환방향족탄화수소의 농도 특성)

  • Nam, Seong-Nam;Lee, Mi-Young;Yeon, Jinmo;Jeon, Taewan;Shin, Sun Kyoung
    • Journal of Korean Society of Environmental Engineers
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    • v.34 no.8
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    • pp.574-582
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    • 2012
  • This study presents the concentrations of the polycyclic aromatic hydrocarbons (PAHs) listed as priority pollutants by United States Environmental Protection Agency (US EPA), in 98 sludges from 54 industrial wastewater treatment facilities of South Korea. The mean concentrations of ${\Sigma}_{16}PAHs$ were ranged from 32.5 ${\mu}g/kg-dw$ to 1189.3 ${\mu}g/kg-dw$ by industries, and the highest content was found in the petrochemical industry, followed by chemical, clothing manufacturing and dying, pulp and papermaking, secondary wastewater treatment, and food/beverage producing industries. Comparisons to the EU and Danish standards of ${\Sigma}_{16}PAHs$ in sewage sludge for land application showed only two samples (one from petrochemical, and the other from chemical industry) exceeded the limits. ANOVA test with PAH concentrations as variables revealed no statistically significant influences by industrial types and sampling time (i.e., seasonal variations). Pearson correlations between individual PAHs showed strong relationships (r>0.7) among 4-ring PAHs. Concentrations of acenaphthylene, anthracene, fluoranthene, benzo(a)anthracene, benzo(f)fluoranthene, benzo(k)fluoranthene, benzo(a)pyrene presented strong correlations to ${\Sigma}_{16}PAHs$. Principal component analysis discriminated entire samples into three groups by two principal components (PC1 and PC2) with 70% of data variations, in which industrial types were not of importance, but a dominance of certain PAHs. Samples in group-I, which is high PC1 and low PC2, were characterized by a dominance of 2-ring PAHs, and in group-II, PC1 and PC2 showed a linear relation, was dominant 4-ring PAHs. Group-III with low PC1 and high PC2 includes 17 samples showing a noticeably high contribution of 3-ring PAHs to ${\Sigma}_{16}PAHs$. This study provides concentrations of PAHs in industrial sludges collected from a wide variety of sources (six industrial types) and two seasons of sampling events, and the comparison of ${\Sigma}_{16}PAHs$ with other studies are also discussed.

Monitoring of Soil Bacterial Community and Some Inoculated Bacteria After Prescribed Fire in Microcosm

  • Song Hong-Gyu;Kim Ok-Sun;Yoo Jae-Jun;Jeon Sun-Ok;Hong Sun-Hee;Lee Dong-Hun;Ahn Tae-Seok
    • Journal of Microbiology
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    • v.42 no.4
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    • pp.285-291
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    • 2004
  • The soil bacterial community and some inoculated bacteria were monitored to assess the microbial responses to prescribed fire in their microcosm. An acridine orange direct count of the bacteria in the unburned control soil were maintained at a relatively stable level $(2.0\~2.7\times10^9\;cells/g^{-1}{\cdot}soil)$ during the 180 day study period. The number of bacteria in the surface soil was decreased by fire, but was restored after 3 months. Inoculation of some bacteria increased the number of inoculated bacteria sev­eral times and these elevated levels lasted several months. The ratios of eubacteria detected by a flu­orescent in situ hybridization (FISH) method to direct bacterial count were in the range of $60\~80\%$ during the study period, with the exception of some lower values at the beginning, but there were no definite differences between the burned and unburned soils or the inoculated and uninoculated soils. In the unburned control soil, the ratios of $\alpha-,\beta-\;and\;\gamma-subgroups$ of the proteobacteria, Cytophaga-Fla­vobacterium and other eubacteria groups to that of the entire eubacteria were 13.7, 31.7, 17.1, 16.8 and $20.8\%,$ respectively, at time 0. The overall change on the patterns of the ratios of the 5 subgroups of eubacteria in the uninoculated burned and inoculated soils were similar to those of the unburned con­trol soil, with the exception of some minor variations during the initial period. The proportions of each group of eubacteria became similar in the different microcosms after 6 months, which may indicate the recovery of the original soil microbial community structure after fire or the inoculation of some bac­teria. The populations of Azotobacter vinelandii, Bacillus megaterium and Pseudomonas fluorescens, which had been inoculated to enhance the microbial activities, and monitored by FISH method, showed similar changes in the microcosms, and maintained high levels for several months.

Distribution Characteristics of Polycyclic Aromatic Hydrocarbons in the Sediments of Kwangyang Bay in Korea (광양만 연안 퇴적토 중의 다환방향족탄화수소류의 분포특성)

  • Chung, Hung-Ho;Jeong, Ho-Seung;Choi, Sang-Won
    • Applied Chemistry for Engineering
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    • v.17 no.2
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    • pp.210-216
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    • 2006
  • The concentrations of 16 priority PAHs (US EPA standard) were analyzed in the surface sediments obtained from 23 sampling sites near Kwangyang Bay in Korea. There was a local variability in the total PAHs ranged from 0.01 to 171.39 mg/kg, with a mean value of $8.13{\pm}24.8mg/kg$. The major pollution sources of PAHs near Kwanyang Bay were Taeindo, Sueo stream and Wallae stream, whose concentrations were 114.81, 38.37 mg/kg and 19.05 mg/kg, respectively. It showed that PAHs concentrations were increased with the decrease of particle size and with the increase of organic carbon contents in three fractioned sediments. From the analysis of PAHs source using LMW/HMW, Phe/Ant, and Fla/Pyr, pyrolysis by-products were mostly showed in Kwangyang Bay and some place showed the mixure of pyrolysis by-products, and crude oil by-products. Besides, the toxic effects assessment on benthic ecosystem for three major pollution sources showed that the PAHs concentration of Taindo which was mainly accumulated with carcinogenic PAHs exceeds ERM value and the PAHs of Sueo and Wallae streams are the degree of ERL value.

Helicobacter pylori Strain 51 (Korean Isolate): Ordered Overlapping BAC Library, Combined Physical and Genetic Map, and Comparative Analysis with H. pylori Strain 26695 and Strain J99

  • KANG HYUNG-LYUN;LEE WOO-KON;SONG JAE-YOUNG;CHOI SANG-HAENG;PARK SEONG-GYU;RYU BOK-DEOK;LEE EUN-JOO;KIM JI-SUN;PARK JEONG-UCK;BAIK SEUNG-CHUL;CHOI MYOUNG-BUM;YOUN HEE-SHANG;KO GYUNG-HYUCK
    • Journal of Microbiology and Biotechnology
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    • v.15 no.4
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    • pp.844-854
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    • 2005
  • We constructed a defined physical and genetic map of H. pylori strain 51, previously isolated from a Korean patient with a duodenal ulcer, by combining a restriction analysis by pulse-field gel electrophoresis with the construction of a BAC library. A Notl-digest of H. pylori strain 51 genome yielded seven fragments, from which the genomic size was estimated to be 1,698$\pm$24 kb. The BAC library was constructed from 50 to 200 kb fragments of HindIII-digested genomic DNA. From 700 BAC clones, an ordered overlapping maxi-set of 82 BAC clones was assembled that covered the entire genome. The positions of 15 genes were localized in the strain 51 genome with 4-22 kb of resolution and were compared with their orthologues in strain 26695 and strain J99. The arrangement of the 15 genes was identical in strain 51 and strain J99, except for flaA and hpaA. The plasticity zone of strain 51, like that of strain J99, was located in the single region, and was shorter than those of strain 26695 and strain J99. The strain 51 plasticity zone consisted of ORFs common only to strain 51 and J99 or to strain 51 and 26695, as well as strain 51-specific ORFs. Three genetic translocations and/or inversions were found between orthologue ORFs in strain 51 and strain J99. These results show that the chromosomal organization of strain 51 differs from Western strains such as strain 26695 and strain J99.