• 한국환경보건학회지
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• 제42권3호
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• pp.189-195
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• 2016

Objectives: To ensure the microbiological safety of groundwater, it was confirmed whether waterborne pathogenic bacteria in groundwater samples tested positive for total coliforms in the Chungcheongnam-do Province region. Methods: Total colony counts, total coliforms and fecal coliforms were tested according to the process mandated by the drinking water quality testing standards of Korea. DNA was extracted from the samples, tested positive for total coliforms, and then subjected to real-time PCR to detect waterborne pathogenic bacteria. Results: A total of 115 samples were inadequate for drinking water. Thirty-one cases (27%) showed positive for fecal coliforms and nine cases (7.8%) showed total colony counts exceeding drinking water standards. Twenty-seven cases (23.5%) showed three items (total colony counts, total coliforms and fecal coliforms). Using the real-time PCR method, waterborne pathogens were detected in 57 cases (49.6%) in 115 samples. Seventy-eight cases of waterborne pathogenic bacteria were detected (including duplications): 27 cases of pathogenic E. coli (EPEC (19), ETEC (5), EHEC (1), EAEC (1) and EIEC (1)); 45 of Bacillus cereus; two of Yersinia spp.; two of Salmonella spp.; one of Staphylococcus aureus; one of Clostridium perfringens. Conclusion: The real-time PCR method can offer rapid and accurate detection of waterborne pathogenic bacteria. Therefore, this assay could be an alternative to conventional culture methods and can further ensure the microbiological safety of groundwater.

• Parasites, Hosts and Diseases
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• 제53권2호
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• pp.147-154
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• 2015

Various constituents in clinical specimens, particularly feces, can inhibit the PCR assay and lead to false-negative results. To ensure that negative results of a diagnostic PCR assay are true, it should be properly monitored by an inhibition control. In this study, a cloning vector harboring a modified target DNA sequence (${\approx}375bp$) was constructed to be used as a competitive internal amplification control (IAC) for a conventional PCR assay that detects ${\approx}550bp$ of the Cryptosporidium oocyst wall protein (COWP) gene sequence in human feces. Modification of the native PCR target was carried out using a new approach comprising inverse PCR and restriction digestion techniques. IAC was included in the assay, with the estimated optimum concentration of 1 fg per reaction, as duplex PCR. When applied on fecal samples spiked with variable oocysts counts, ${\approx}2$ oocysts were theoretically enough for detection. When applied on 25 Cryptosporidium-positive fecal samples of various infection intensities, both targets were clearly detected with minimal competition noticed in 2-3 samples. Importantly, both the analytical and the diagnostic sensitivities of the PCR assay were not altered with integration of IAC into the reactions. When tried on 180 randomly collected fecal samples, 159 were Cryptosporidium-negatives. Although the native target DNA was absent, the IAC amplicon was obviously detected on gel of all the Cryptosporidium-negative samples. These results imply that running of the diagnostic PCR, inspired with the previously developed DNA extraction protocol and the constructed IAC, represents a useful tool for Cryptosporidium detection in human feces.

• 대한임상검사과학회지
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• 제56권1호
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• pp.59-65
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• 2024

제주특별자치도에 서식하는 등줄쥐를 포획하여 대장을 포함한 내부장기에서 분변 검체를 채취한 후, 장내 미생물을 호기적 배양하여 등줄쥐 분변에서 배양된 장내 미생물 분포를 조사하였다. 등줄쥐 분변 36개의 검체를 호기성 배양된 세균 집락을 그람염색 한 결과 모든 검체에서 그람음성막대균이 우세하게 관찰되었다. 36 검체 중 그람음성막대균은 36 균주(100%), 그람양성알균은 21 균주(58.3%), 그람양성막대균은 15 균주(41.7%)로 나타났으며 그람음성알균은 관찰되지 않았다. 36개의 검체에서 배양된 그람음성막대균은 Vitek 2 system을 이용하여 동정한 결과 모두 Escherichia coli (E. coli) 균종으로 동정되었으며, 1개 검체는 E. coli 균종과 Enterobacter cloacae 균종이 동시에 동정되었다. 분리된 E. coli 36 균주 중 항균제에 내성을 보이는 균주는 발견되지 않았으며, 1 균주만 cefoxitin 항균제에 중등도 내성을 보이는 것으로 나타났다. 진드기, 설치류 매개 감염병의 원인이 되는 등줄쥐의 분변에서는 병원성 세균은 존재하지 않았다.

• 한국수산과학회지
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• 제6권3_4호
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• pp.87-91
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• 1973

현재 우리나라에서 시판되고 있는 수산 건제품에 대한 위생지표 세균의 오염도를 파악하고 나아가서 식품의 위생관리에 필요한 기초자료를 얻고자 1970년 9일부터 12월까지 부산시 남포동 건어물 시장과 충무동 어패류 처리조합에서 건제품 21종을 수집하여 위생지표 세균인 대장균군, 분변계대장균, 분변계연쇄상구균, 장구균 및 일반생균수를 시험하여 다음과 같은 결과를 얻었다. 1. 전 식품을 통하여 fecal strepococci나 enterococci는 coliform group이나 fecal coliform MPN보다 훨씬 높았다. 3, 일반적으로 enterococci MPN은 대부분 1,000이상이었으며 fecal coliform MPN은 18이하였다. 3. 대장균군의 중앙치는 78이었으며 분변계연쇄상구균은 3,300이었고 일반생균수의 중앙처는 $9.9\times10^4$이었다. 4. 일반적으로 사람의 손과 접촉이 많은 제품은 다른 제품에 비하여 세균 오염도가 높았다. 5. 해조류의 세균 오염도는 어패류나 연체류에 비하여 매우 낮았다. 6, 각 위생지표 세균과 일반 생균수 사이에는 일정한 상관관계는 없었다.

• 대한수의학회지
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• 제30권2호
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• pp.193-201
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• 1990

An attempt was made to isolate Salmonella(S) organisms from a total of 4,587 fecal samples of birds during the period from May 1987 to March 1988, and serotype and biotypes of the isolates were also investigated. One hundred and sixty-six Salmonella strains were isolated from 151(3.3%) of 4,587 fecal samples of birds, and their serotype was all identified as S typhimurium var copenhagen. The positive samples of S typhimurium var copenhagen were 149 samples(5.1%) in pigeons and 2 samples (0.8%) in aquatic birds. No Salmonella was obtained from ducks, pheasant, and other birds. The isolation frequencies of S typhimurium var copenhagen from pigeons varied from 1.1 to 12.8% at 5 parks, it was higher in September and November. Biotypes of 166 S typhimurium var copenhagen strains isolated from pigeons and aquatic birds were all biotype 10 according to Brandis' method, and were biotype 25hi (78.3%), 27 hi (14.5%), 25 fhi (3.6%), 25 bhi (1.8%), 27 bhi (0.6%), 27 hiz (0.6%), and 9 hi (0.6%) according to Duguid's scheme. Appearance of different biotypes indicated the occurrence of exotic infection sources on the parks.

• Journal of Microbiology and Biotechnology
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• 제29권12호
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• pp.1947-1956
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• 2019

The gut microbiome influences the health and well-being of dogs. However, little is known about the impact of breed on the fecal microbiome composition in dogs. Therefore, we aimed to investigate the differences in the fecal microbiome in three breeds of dog fed and housed under the same conditions, namely eight Maltese (8.0 ± 0.1 years), eight Miniature Schnauzer (8.0 ± 0.0 years), and nine Poodle dogs (8.0 ± 0.0 years). Fresh fecal samples were collected from the dogs and used to extract metagenomic DNA. The composition of the fecal microbiome was evaluated by 16S rRNA gene amplicon sequencing on the MiSeq platform. A total of 840,501 sequences were obtained from the 25 fecal samples and classified as Firmicutes (32.3-97.3% of the total sequences), Bacteroidetes (0.1-62.6%), Actinobacteria (0.2-14.7%), Fusobacteria (0.0-5.7%), and Proteobacteria (0.0-5.1%). The relative abundance of Firmicutes was significantly lower in the Maltese dog breed than that in the other two breeds, while that of Fusobacteria was significantly higher in the Maltese than in the Miniature Schnauzer breed. At the genus level, the relative abundance of Streptococcus, Fusobacterium, Turicibacter, Succinivibrio, and Anaerobiospirillum differed significantly among the three dog breeds. These genera had no correlation with age, diet, sex, body weight, vaccination history, or parasite protection history. Within a breed, some of these genera had a correlation with at least one blood chemistry value. This study indicates that the composition of the fecal microbiome in dogs is affected by breed.

• 상하수도학회지
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• 제20권6호
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• pp.885-892
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• 2006

In order to investigate whether or not Total Coliforms (T.C.) and Fecal Coliforms (F.C.) are compatible as indicator microorganisms of waterbome enteric viruses, a total of 192 surface water samples from 24 locations in Korea were tested for T.C., F.C., and human enteric viruses from July 2003 to January 2006. Altogether, the number of T.C. in each samples was ranged from $0{\sim}5.3{\times}10^4$ colony forming unit(CFU)/100mL, and the number of F.C. ranged from $0{\sim}5.0{\times}10^3CFU/100mL$ per sample. Thirty-three percent of the samples tested positive for human enteric viruses after the total culturable virus assay. The results of the statistical analysis showed that T.C. and F.C. had a significant correlation with turbidity and temperature, but the waterbome enteric viruses did not. When compared to the number of T.C. or F.C. per sample, the concentration of waterbome enteric viruses was not found to be correlated. In conclusion, it is suggested that T.C. and F.C. may not be sufficient microbial indicators of waterbome enteric viruses in the samples analyzed in this study. However, further research is needed to find other microbial indicators of waterbome enteric viruses and to develop more advanced and sensitive methods to detect waterborne enteric viruses.

• 한국임상수의학회지
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• 제25권6호
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• pp.447-451
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• 2008

This study was aimed to determine the prevalence of Helicobacter spp. in privately owned pet dog's oral cavity samples (saliva, dental plaque, vomitus) and fecal samples in Korea and to evaluate the potential route for transmission. Total 100 patients dogs attending one Veterinary Medical Teaching Hospital were examined by Helicobacter genus-specific PCR assay and these dogs were divided into two groups whether they had gastrointestinal signs (vomiting, nausea and diarrhea) or not. The total detection rate of Helicobacter spp. by PCR in saliva, dental plaque and fecal samples was 23%, 1% and 68% respectively. The difference of prevalence with regarding the gastrointestinal sings was not significant. In vomitus, two of seven samples had positive results. These results suggested that Helicobacter spp. are present in the oral cavity although they were present in very low number and are not like to be normal oral flora of the oral cavity and Helicobacter spp. in dogs could be transmitted through oral-oral, gastrooral and fecal-oral route.

• Asian-Australasian Journal of Animal Sciences
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• 제27권4호
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• pp.495-502
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• 2014

The effect of Bacillus subtilis natto on hindgut fermentation and microbiota of early lactation Holstein dairy cows was investigated in this study. Thirty-six Holstein dairy cows in early lactation were randomly allocated to three groups: no B. subtilis natto as the control group, B. subtilis natto with $0.5{\times}10^{11}cfu$ as DMF1 group and B. subtilis natto with $1.0{\times}10^{11}cfu$ as DMF2 group. After 14 days of adaptation period, the formal experiment was started and lasted for 63 days. Fecal samples were collected directly from the rectum of each animal on the morning at the end of eighth week and placed into sterile plastic bags. The pH, $NH_3$-N and VFA concentration were determined and fecal bacteria DNA was extracted and analyzed by DGGE. The results showed that the addition of B. subtilus natto at either treatment level resulted in a decrease in fecal $NH_3$-N concentration but had no effect on fecal pH and VFA. The DGGE profile revealed that B. subtilis natto affected the population of fecal bacteria. The diversity index of Shannon-Wiener in DFM1 decreased significantly compared to the control. Fecal Alistipes sp., Clostridium sp., Roseospira sp., beta proteobacterium were decreased and Bifidobacterium was increased after supplementing with B. subtilis natto. This study demonstrated that B. subtilis natto had a tendency to change fecal microbiota balance.

• Journal of Animal Science and Technology
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• 제64권5호
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• pp.897-910
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• 2022

Bovine fecal microbiota is important for host health and its composition can be affected by various factors, such as diet, age, species, breed, regions, and environments. The objective of this study was to evaluate the impact of diet and gender on fecal microbiota in Korean native Hanwoo cattle. The 16S rRNA gene amplicon sequencing of fecal microbiota was conducted from 44 Hanwoo cattle divided into four groups: (1) 11 heifers fed an oat hay plus total mixed ration (TMR) diet for breeding (HOTB), (2) 11 heifers fed an early fattening TMR diet (HEFT), (3) 11 steers fed the early fattening TMR diet (SEFT), and (4) 11 steers fed the late fattening TMR diet (SLFT). Firmicutes and Bacteroidota were the first and second most dominant phyla in all the samples, respectively. The Firmicutes/Bacteroidota (F/B) ratio associated with feed efficiency was significantly greater in the SLFT group than in the other groups. At the genus level, Romboutsia, Paeniclostridium, and Turicibacter were the most abundant in the SLFT while Akkermansia, Bacteroides, and Monoglobus were the most abundant in the HOTB group. Although the same early fattening TMR diet was fed to Hanwoo heifers and steers, Marvinbryantia and Coprococcus were the most abundant in the HEFT group while Alistipes and Ruminococcus were the most abundant in the SEFT group. Shannon and Simpson diversity indices were significantly lower in the SLFT group than in the other groups. Distribution of fecal microbiota and functional genetic profiles were significantly different among the four treatment groups. The present study demonstrates that different diets and genders can affect fecal microbiota and the F/B ratio may be associated with feed efficiency in Hanwoo cattle. Our results may help develop strategies to improve gut health and productivity through manipulation of fecal microbiota using the appropriate diet considering Hanwoo cattle gender.